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Items: 1 to 50 of 324

1.

Evolutionary dynamics of membrane transporters and channels: enhancing function through fusion.

Willson BJ, Chapman LN, Thomas GH.

Curr Opin Genet Dev. 2019 Sep 25;58-59:76-86. doi: 10.1016/j.gde.2019.07.017. [Epub ahead of print] Review.

PMID:
31562976
2.

Water Networks Can Determine the Affinity of Ligand Binding to Proteins.

Darby JF, Hopkins AP, Shimizu S, Roberts SM, Brannigan JA, Turkenburg JP, Thomas GH, Hubbard RE, Fischer M.

J Am Chem Soc. 2019 Oct 9;141(40):15818-15826. doi: 10.1021/jacs.9b06275. Epub 2019 Sep 26.

PMID:
31518131
3.

Surface-Bound Antibiotic for the Detection of β-Lactamases.

Miller LM, Silver CD, Herman R, Duhme-Klair AK, Thomas GH, Krauss TF, Johnson SD.

ACS Appl Mater Interfaces. 2019 Sep 11;11(36):32599-32604. doi: 10.1021/acsami.9b05793. Epub 2019 Aug 26.

PMID:
31449379
4.

Systems Analyses Reveal the Resilience of Escherichia coli Physiology during Accumulation and Export of the Nonnative Organic Acid Citramalate.

Webb J, Springthorpe V, Rossoni L, Minde DP, Langer S, Walker H, Alstrom-Moore A, Larson T, Lilley K, Eastham G, Stephens G, Thomas GH, Kelly DJ, Green J.

mSystems. 2019 Jun 11;4(4). pii: e00187-19. doi: 10.1128/mSystems.00187-19.

5.

Evidence that Ergosterol Biosynthesis Modulates Activity of the Pdr1 Transcription Factor in Candida glabrata.

Vu BG, Thomas GH, Moye-Rowley WS.

MBio. 2019 Jun 11;10(3). pii: e00934-19. doi: 10.1128/mBio.00934-19.

6.

Author Correction: Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).

Queiroz RML, Smith T, Villanueva E, Marti-Solano M, Monti M, Pizzinga M, Mirea DM, Ramakrishna M, Harvey RF, Dezi V, Thomas GH, Willis AE, Lilley KS.

Nat Biotechnol. 2019 Jun;37(6):692. doi: 10.1038/s41587-019-0161-8.

PMID:
31123356
7.

Sexual selection predicts the rate and direction of colour divergence in a large avian radiation.

Cooney CR, Varley ZK, Nouri LO, Moody CJA, Jardine MD, Thomas GH.

Nat Commun. 2019 Apr 16;10(1):1773. doi: 10.1038/s41467-019-09859-7.

8.

Antibiotic export: transporters involved in the final step of natural product production.

Severi E, Thomas GH.

Microbiology. 2019 Aug;165(8):805-818. doi: 10.1099/mic.0.000794. Epub 2019 Apr 9.

PMID:
30964430
9.

AtrR Is an Essential Determinant of Azole Resistance in Aspergillus fumigatus.

Paul S, Stamnes M, Thomas GH, Liu H, Hagiwara D, Gomi K, Filler SG, Moye-Rowley WS.

MBio. 2019 Mar 12;10(2). pii: e02563-18. doi: 10.1128/mBio.02563-18.

10.

Enhanced functionalisation of major facilitator superfamily transporters via fusion of C-terminal protein domains is both extensive and varied in bacteria.

Willson BJ, Dalzell L, Chapman LNM, Thomas GH.

Microbiology. 2019 Apr;165(4):419-424. doi: 10.1099/mic.0.000771. Epub 2019 Jan 18.

PMID:
30657446
11.

Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).

Queiroz RML, Smith T, Villanueva E, Marti-Solano M, Monti M, Pizzinga M, Mirea DM, Ramakrishna M, Harvey RF, Dezi V, Thomas GH, Willis AE, Lilley KS.

Nat Biotechnol. 2019 Feb;37(2):169-178. doi: 10.1038/s41587-018-0001-2. Epub 2019 Jan 3. Erratum in: Nat Biotechnol. 2019 Jun;37(6):692.

12.

A Tale of Three Species: Adaptation of Sodalis glossinidius to Tsetse Biology, Wigglesworthia Metabolism, and Host Diet.

Hall RJ, Flanagan LA, Bottery MJ, Springthorpe V, Thorpe S, Darby AC, Wood AJ, Thomas GH.

MBio. 2019 Jan 2;10(1). pii: e02106-18. doi: 10.1128/mBio.02106-18.

13.

Correlates of rate heterogeneity in avian ecomorphological traits.

Chira AM, Cooney CR, Bright JA, Capp EJR, Hughes EC, Moody CJA, Nouri LO, Varley ZK, Thomas GH.

Ecol Lett. 2018 Oct;21(10):1505-1514. doi: 10.1111/ele.13131. Epub 2018 Aug 21.

14.

CBMNet: the 'Crossing Biological Membranes' network in industrial biotechnology and bioenergy.

Vanderhoven J, Green J, Thomas GH.

Biochem Soc Trans. 2018 Aug 20;46(4):871-875. doi: 10.1042/BST20170532. Epub 2018 Jul 19.

PMID:
30026367
15.

Structural basis of malodour precursor transport in the human axilla.

Minhas GS, Bawdon D, Herman R, Rudden M, Stone AP, James AG, Thomas GH, Newstead S.

Elife. 2018 Jul 3;7. pii: e34995. doi: 10.7554/eLife.34995.

16.

Massive over-representation of solute-binding proteins (SBPs) from the tripartite tricarboxylate transporter (TTT) family in the genome of the α-proteobacterium Rhodoplanes sp. Z2-YC6860.

Rosa LT, Springthorpe V, Bianconi ME, Thomas GH, Kelly DJ.

Microb Genom. 2018 May;4(5). doi: 10.1099/mgen.0.000176. Epub 2018 Apr 18.

17.

Tripartite ATP-Independent Periplasmic (TRAP) Transporters and Tripartite Tricarboxylate Transporters (TTT): From Uptake to Pathogenicity.

Rosa LT, Bianconi ME, Thomas GH, Kelly DJ.

Front Cell Infect Microbiol. 2018 Feb 12;8:33. doi: 10.3389/fcimb.2018.00033. eCollection 2018. Review.

18.

Part by Part: Synthetic Biology Parts Used in Solventogenic Clostridia.

Gyulev IS, Willson BJ, Hennessy RC, Krabben P, Jenkinson ER, Thomas GH.

ACS Synth Biol. 2018 Feb 16;7(2):311-327. doi: 10.1021/acssynbio.7b00327. Epub 2017 Dec 11. Review.

PMID:
29186949
19.

Corrigendum: Mega-evolutionary dynamics of the adaptive radiation of birds.

Cooney CR, Bright JA, Capp EJR, Chira AM, Hughes EC, Moody CJA, Nouri LO, Varley ZK, Thomas GH.

Nature. 2017 Dec 21;552(7685):430. doi: 10.1038/nature24665. Epub 2017 Nov 29.

PMID:
29186123
20.

On the pull: periplasmic trapping of sugars before transport.

Thomas GH.

Mol Microbiol. 2017 Jun;104(6):883-888. doi: 10.1111/mmi.13691. Epub 2017 May 12.

21.

Mega-evolutionary dynamics of the adaptive radiation of birds.

Cooney CR, Bright JA, Capp EJR, Chira AM, Hughes EC, Moody CJA, Nouri LO, Varley ZK, Thomas GH.

Nature. 2017 Feb 16;542(7641):344-347. doi: 10.1038/nature21074. Epub 2017 Feb 1. Erratum in: Nature. 2017 Nov 29;:.

22.

Trait Evolution in Adaptive Radiations: Modeling and Measuring Interspecific Competition on Phylogenies.

Clarke M, Thomas GH, Freckleton RP.

Am Nat. 2017 Feb;189(2):121-137. doi: 10.1086/689819. Epub 2016 Dec 7.

23.

PELDOR Spectroscopy Reveals Two Defined States of a Sialic Acid TRAP Transporter SBP in Solution.

Glaenzer J, Peter MF, Thomas GH, Hagelueken G.

Biophys J. 2017 Jan 10;112(1):109-120. doi: 10.1016/j.bpj.2016.12.010.

24.

The impact of rate heterogeneity on inference of phylogenetic models of trait evolution.

Chira AM, Thomas GH.

J Evol Biol. 2016 Dec;29(12):2502-2518. doi: 10.1111/jeb.12979. Epub 2016 Oct 4.

25.

Shedding light on the 'dark side' of phylogenetic comparative methods.

Cooper N, Thomas GH, FitzJohn RG.

Methods Ecol Evol. 2016 Jun;7(6):693-699. Epub 2016 Jun 13.

26.

A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies.

Cooper N, Thomas GH, Venditti C, Meade A, Freckleton RP.

Biol J Linn Soc Lond. 2016 May;118(1):64-77. Epub 2015 Dec 1.

27.

Sialic acid acquisition in bacteria-one substrate, many transporters.

Thomas GH.

Biochem Soc Trans. 2016 Jun 15;44(3):760-5. doi: 10.1042/BST20160056. Review.

PMID:
27284039
28.

Corrigendum: Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2016 Jun 2;6:27163. doi: 10.1038/srep27163. No abstract available.

29.

Dating placentalia: Morphological clocks fail to close the molecular fossil gap.

Puttick MN, Thomas GH, Benton MJ.

Evolution. 2016 Apr;70(4):873-86. doi: 10.1111/evo.12907. Epub 2016 Apr 6.

30.

Determinants of flammability in savanna grass species.

Simpson KJ, Ripley BS, Christin PA, Belcher CM, Lehmann CE, Thomas GH, Osborne CP.

J Ecol. 2016 Jan;104(1):138-148. Epub 2015 Nov 26.

31.

Fossils and living taxa agree on patterns of body mass evolution: a case study with Afrotheria.

Puttick MN, Thomas GH.

Proc Biol Sci. 2015 Dec 22;282(1821):20152023. doi: 10.1098/rspb.2015.2023.

32.

Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2015 Nov 13;5:16498. doi: 10.1038/srep16498. Erratum in: Sci Rep. 2016 Jun 02;6:27163.

33.

The substrate-binding protein in bacterial ABC transporters: dissecting roles in the evolution of substrate specificity.

Maqbool A, Horler RS, Muller A, Wilkinson AJ, Wilson KS, Thomas GH.

Biochem Soc Trans. 2015 Oct;43(5):1011-7. doi: 10.1042/BST20150135. Review.

PMID:
26517916
34.

Evolution: An avian explosion.

Thomas GH.

Nature. 2015 Oct 22;526(7574):516-7. doi: 10.1038/nature15638. Epub 2015 Oct 7. No abstract available.

PMID:
26444233
35.

Land-Sparing Agriculture Best Protects Avian Phylogenetic Diversity.

Edwards DP, Gilroy JJ, Thomas GH, Uribe CA, Haugaasen T.

Curr Biol. 2015 Sep 21;25(18):2384-91. doi: 10.1016/j.cub.2015.07.063. Epub 2015 Sep 3.

36.

Tripartite ATP-independent Periplasmic (TRAP) Transporters Use an Arginine-mediated Selectivity Filter for High Affinity Substrate Binding.

Fischer M, Hopkins AP, Severi E, Hawkhead J, Bawdon D, Watts AG, Hubbard RE, Thomas GH.

J Biol Chem. 2015 Nov 6;290(45):27113-23. doi: 10.1074/jbc.M115.656603. Epub 2015 Sep 5.

37.

Identification of axillary Staphylococcus sp. involved in the production of the malodorous thioalcohol 3-methyl-3-sufanylhexan-1-ol.

Bawdon D, Cox DS, Ashford D, James AG, Thomas GH.

FEMS Microbiol Lett. 2015 Aug;362(16). pii: fnv111. doi: 10.1093/femsle/fnv111. Epub 2015 Jul 9.

PMID:
26163522
38.

Spectrin tetramer formation is not required for viable development in Drosophila.

Khanna MR, Mattie FJ, Browder KC, Radyk MD, Crilly SE, Bakerink KJ, Harper SL, Speicher DW, Thomas GH.

J Biol Chem. 2015 Jan 9;290(2):706-15. doi: 10.1074/jbc.M114.615427. Epub 2014 Nov 7.

39.

Adaptation and convergent evolution within the Jamesonia-Eriosorus complex in high-elevation biodiverse Andean hotspots.

Sánchez-Baracaldo P, Thomas GH.

PLoS One. 2014 Oct 23;9(10):e110618. doi: 10.1371/journal.pone.0110618. eCollection 2014.

40.

Nesting behaviour influences species-specific gas exchange across avian eggshells.

Portugal SJ, Maurer G, Thomas GH, Hauber ME, Grim T, Cassey P.

J Exp Biol. 2014 Sep 15;217(Pt 18):3326-32. doi: 10.1242/jeb.103291.

41.

Probing linker design in citric acid-ciprofloxacin conjugates.

Milner SJ, Snelling AM, Kerr KG, Abd-El-Aziz A, Thomas GH, Hubbard RE, Routledge A, Duhme-Klair AK.

Bioorg Med Chem. 2014 Aug 15;22(16):4499-505. doi: 10.1016/j.bmc.2014.04.009. Epub 2014 Apr 15.

PMID:
24794750
42.

A different path: revealing the function of staphylococcal proteins in biofilm formation.

Atkin KE, MacDonald SJ, Brentnall AS, Potts JR, Thomas GH.

FEBS Lett. 2014 May 21;588(10):1869-72. doi: 10.1016/j.febslet.2014.04.002. Epub 2014 Apr 13.

43.

Global distribution and conservation of evolutionary distinctness in birds.

Jetz W, Thomas GH, Joy JB, Redding DW, Hartmann K, Mooers AO.

Curr Biol. 2014 May 5;24(9):919-30. doi: 10.1016/j.cub.2014.03.011. Epub 2014 Apr 10.

44.

Cytoplasmic capes are nuclear envelope intrusions that are enriched in endosomal proteins and depend upon βH-spectrin and Annexin B9.

Wu J, Bakerink KJ, Evangelista ME, Thomas GH.

PLoS One. 2014 Apr 4;9(4):e93680. doi: 10.1371/journal.pone.0093680. eCollection 2014.

45.

High rates of evolution preceded the origin of birds.

Puttick MN, Thomas GH, Benton MJ.

Evolution. 2014 May;68(5):1497-510. doi: 10.1111/evo.12363. Epub 2014 Feb 23.

46.

Probing bacterial uptake of glycosylated ciprofloxacin conjugates.

Milner SJ, Carrick CT, Kerr KG, Snelling AM, Thomas GH, Duhme-Klair AK, Routledge A.

Chembiochem. 2014 Feb 10;15(3):466-71. doi: 10.1002/cbic.201300512. Epub 2014 Jan 21.

PMID:
24449436
47.

Transport and catabolism of the sialic acids N-glycolylneuraminic acid and 3-keto-3-deoxy-D-glycero-D-galactonononic acid by Escherichia coli K-12.

Hopkins AP, Hawkhead JA, Thomas GH.

FEMS Microbiol Lett. 2013 Oct;347(1):14-22. doi: 10.1111/1574-6968.12213. Epub 2013 Aug 2.

48.

Staphyloferrin A as siderophore-component in fluoroquinolone-based Trojan horse antibiotics.

Milner SJ, Seve A, Snelling AM, Thomas GH, Kerr KG, Routledge A, Duhme-Klair AK.

Org Biomol Chem. 2013 Jun 7;11(21):3461-8. doi: 10.1039/c3ob40162f. Epub 2013 Apr 11.

PMID:
23575952
49.

The global diversity of birds in space and time.

Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO.

Nature. 2012 Nov 15;491(7424):444-8. doi: 10.1038/nature11631. Epub 2012 Oct 31.

PMID:
23123857
50.

MpaA is a murein-tripeptide-specific zinc carboxypeptidase that functions as part of a catabolic pathway for peptidoglycan-derived peptides in γ-proteobacteria.

Maqbool A, Hervé M, Mengin-Lecreulx D, Wilkinson AJ, Thomas GH.

Biochem J. 2012 Dec 15;448(3):329-41. doi: 10.1042/BJ20121164.

PMID:
22970852

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