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Reducing injection intensity is associated with decreased risk for invasive bacterial infection among high-frequency injection drug users.

Islam S, Piggott DA, Moriggia A, Astemborski J, Mehta SH, Thomas DL, Kirk GD.

Harm Reduct J. 2019 Jun 17;16(1):38. doi: 10.1186/s12954-019-0312-8.


Tractography-based parcellation does not provide strong evidence of anatomical organisation within the thalamus.

Clayden JD, Thomas DL, Kraskov A.

Neuroimage. 2019 Jun 8;199:418-426. doi: 10.1016/j.neuroimage.2019.06.019. [Epub ahead of print]


Reply to MacDonald et al.

Patel EU, Mehta SH, Boon D, Quinn TC, Thomas DL, Tobian AAR.

Clin Infect Dis. 2019 May 24. pii: ciz441. doi: 10.1093/cid/ciz441. [Epub ahead of print] No abstract available.


Global Elimination of Chronic Hepatitis.

Thomas DL.

N Engl J Med. 2019 May 23;380(21):2041-2050. doi: 10.1056/NEJMra1810477. Review. No abstract available.


Investigating the oxygenation of brain arteriovenous malformations using quantitative susceptibility mapping.

Biondetti E, Rojas-Villabona A, Sokolska M, Pizzini FB, Jäger HR, Thomas DL, Shmueli K.

Neuroimage. 2019 May 7. pii: S1053-8119(19)30397-0. doi: 10.1016/j.neuroimage.2019.05.014. [Epub ahead of print]


Overlapping epidemics of alcohol and illicit drug use among HCV-infected persons who inject drugs.

Irvin R, Chander G, Falade-Nwulia O, Astemborski J, Starbird L, Kirk GD, Sulkowski MS, Thomas DL, Mehta SH.

Addict Behav. 2019 Sep;96:56-61. doi: 10.1016/j.addbeh.2019.04.023. Epub 2019 Apr 23.


Reply to Soriano Gómez-Gallego and Corral.

Patel EU, Thio CL, Boon D, Thomas DL, Tobian AAR.

Clin Infect Dis. 2019 Apr 3. pii: ciz274. doi: 10.1093/cid/ciz274. [Epub ahead of print] No abstract available.


Deep and Frequent Phenotyping study protocol: an observational study in prodromal Alzheimer's disease.

Koychev I, Lawson J, Chessell T, Mackay C, Gunn R, Sahakian B, Rowe JB, Thomas AJ, Rochester L, Chan D, Tom B, Malhotra P, Ballard C, Chessell I, Ritchie CW, Raymont V, Leroi I, Lengyel I, Murray M, Thomas DL, Gallacher J, Lovestone S.

BMJ Open. 2019 Mar 23;9(3):e024498. doi: 10.1136/bmjopen-2018-024498.


Barriers and facilitators of hepatitis C treatment uptake among people who inject drugs enrolled in opioid treatment programs in Baltimore.

Falade-Nwulia O, Irvin R, Merkow A, Sulkowski M, Niculescu A, Olsen Y, Stoller K, Thomas DL, Latkin C, Mehta SH.

J Subst Abuse Treat. 2019 May;100:45-51. doi: 10.1016/j.jsat.2019.01.021. Epub 2019 Jan 30.


Cerebral perfusion changes in presymptomatic genetic frontotemporal dementia: a GENFI study.

Mutsaerts HJMM, Mirza SS, Petr J, Thomas DL, Cash DM, Bocchetta M, de Vita E, Metcalfe AWS, Shirzadi Z, Robertson AD, Tartaglia MC, Mitchell SB, Black SE, Freedman M, Tang-Wai D, Keren R, Rogaeva E, van Swieten J, Laforce R, Tagliavini F, Borroni B, Galimberti D, Rowe JB, Graff C, Frisoni GB, Finger E, Sorbi S, de Mendonça A, Rohrer JD, MacIntosh BJ, Masellis M; GENetic Frontotemporal dementia Initiative (GENFI) .

Brain. 2019 Apr 1;142(4):1108-1120. doi: 10.1093/brain/awz039. Erratum in: Brain. 2019 Jun 1;142(6):e28.


Rising role of prescription drugs as a portal to injection drug use and associated mortality in Baltimore, Maryland.

Cepeda JA, Astemborski J, Kirk GD, Celentano DD, Thomas DL, Mehta SH.

PLoS One. 2019 Mar 4;14(3):e0213357. doi: 10.1371/journal.pone.0213357. eCollection 2019.


Inconsistent temporal patterns of genetic variation of HCV among high-risk subjects may impact inference of transmission networks.

Rose R, Rodriguez C, Dollar JJ, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O.

Infect Genet Evol. 2019 Jul;71:1-6. doi: 10.1016/j.meegid.2019.02.025. Epub 2019 Feb 22.


Effect of labelling plane angulation and position on labelling efficiency and cerebral blood flow quantification in pseudo-continuous arterial spin labelling.

Sokolska M, Bainbridge A, Rojas-Villabona A, Golay X, Thomas DL.

Magn Reson Imaging. 2019 Jun;59:61-67. doi: 10.1016/j.mri.2019.02.007. Epub 2019 Feb 22.


IDO1 inhibition potentiates vaccine-induced immunity against pancreatic adenocarcinoma.

Blair AB, Kleponis J, Thomas DL 2nd, Muth ST, Murphy AG, Kim V, Zheng L.

J Clin Invest. 2019 Apr 1;129(4):1742-1755. doi: 10.1172/JCI124077. Epub 2019 Mar 18.


Accelerating the elimination of viral hepatitis: a Lancet Gastroenterology & Hepatology Commission.

Cooke GS, Andrieux-Meyer I, Applegate TL, Atun R, Burry JR, Cheinquer H, Dusheiko G, Feld JJ, Gore C, Griswold MG, Hamid S, Hellard ME, Hou J, Howell J, Jia J, Kravchenko N, Lazarus JV, Lemoine M, Lesi OA, Maistat L, McMahon BJ, Razavi H, Roberts T, Simmons B, Sonderup MW, Spearman CW, Taylor BE, Thomas DL, Waked I, Ward JW, Wiktor SZ; Lancet Gastroenterology & Hepatology Commissioners.

Lancet Gastroenterol Hepatol. 2019 Feb;4(2):135-184. doi: 10.1016/S2468-1253(18)30270-X. Review. Erratum in: Lancet Gastroenterol Hepatol. 2019 May;4(5):e4.


Prevalence of Hepatitis B and Hepatitis D Virus Infections in the United States, 2011-2016.

Patel EU, Thio CL, Boon D, Thomas DL, Tobian AAR.

Clin Infect Dis. 2019 Jan 3. doi: 10.1093/cid/ciz001. [Epub ahead of print]


Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.

Vergara C, Thio CL, Johnson E, Kral AH, O'Brien TR, Goedert JJ, Mangia A, Piazzolla V, Mehta SH, Kirk GD, Kim AY, Lauer GM, Chung RT, Cox AL, Peters MG, Khakoo SI, Alric L, Cramp ME, Donfield SM, Edlin BR, Busch MP, Alexander G, Rosen HR, Murphy EL, Latanich R, Wojcik GL, Taub MA, Valencia A, Thomas DL, Duggal P.

Gastroenterology. 2019 Apr;156(5):1496-1507.e7. doi: 10.1053/j.gastro.2018.12.014. Epub 2018 Dec 26.


Implementation and Evaluation of Guillain-Barré Syndrome Surveillance in Puerto Rico during the 2016 Zika Virus Epidemic.

Major CG, Dirlikov E, Medina NA, Lugo-Robles R, Matos D, Muñoz-Jordán J, Colón-Sánchez C, García-Negrón M, Olivero-Segarra M, Malavé-González G, Thomas DL, Luciano CA, Waterman SH, Sejvar J, Sharp TM, Rivera-García B.

P R Health Sci J. 2018 Dec;37(Spec Issue):S85-S92.


Differences in hippocampal subfield volume are seen in phenotypic variants of early onset Alzheimer's disease.

Parker TD, Slattery CF, Yong KXX, Nicholas JM, Paterson RW, Foulkes AJM, Malone IB, Thomas DL, Cash DM, Crutch SJ, Fox NC, Schott JM.

Neuroimage Clin. 2019;21:101632. doi: 10.1016/j.nicl.2018.101632. Epub 2018 Dec 11.


Non-invasive MRI of brain clearance pathways using multiple echo time arterial spin labelling: an aquaporin-4 study.

Ohene Y, Harrison IF, Nahavandi P, Ismail O, Bird EV, Ottersen OP, Nagelhus EA, Thomas DL, Lythgoe MF, Wells JA.

Neuroimage. 2019 Mar;188:515-523. doi: 10.1016/j.neuroimage.2018.12.026. Epub 2018 Dec 15.


Robust kidney perfusion mapping in pediatric chronic kidney disease using single-shot 3D-GRASE ASL with optimized retrospective motion correction.

Nery F, De Vita E, Clark CA, Gordon I, Thomas DL.

Magn Reson Med. 2019 May;81(5):2972-2984. doi: 10.1002/mrm.27614. Epub 2018 Dec 7.


Erratum for McCarthy et al., "Identification of a Shared Cytochrome p4502E1 Epitope Found in Anesthetic Drug-Induced and Viral Hepatitis".

McCarthy EK, Vakos A, Cottagiri M, Mantilla JJ, Santhanam L, Thomas DL, Amzel LM, Rose NR, Njoku DB.

mSphere. 2018 Dec 5;3(6). pii: e00654-18. doi: 10.1128/mSphere.00654-18. No abstract available.


Clinical Subpopulations in a Sample of North American Children Diagnosed With Acute Flaccid Myelitis, 2012-2016.

Elrick MJ, Gordon-Lipkin E, Crawford TO, Van Haren K, Messacar K, Thornton N, Dee E, Voskertchian A, Nance JR, Muñoz LS, Gorman MP, Benson LA, Thomas DL, Pardo CA, Milstone AM, Duggal P.

JAMA Pediatr. 2018 Nov 30. doi: 10.1001/jamapediatrics.2018.4890. [Epub ahead of print]


Noninvasive quantification of oxygen saturation in the portal and hepatic veins in healthy mice and those with colorectal liver metastases using QSM MRI.

Finnerty E, Ramasawmy R, O'Callaghan J, Connell JJ, Lythgoe M, Shmueli K, Thomas DL, Walker-Samuel S.

Magn Reson Med. 2019 Apr;81(4):2666-2675. doi: 10.1002/mrm.27571. Epub 2018 Nov 19.


Targeting myeloid-inflamed tumor with anti-CSF-1R antibody expands CD137+ effector T-cells in the murine model of pancreatic cancer.

Saung MT, Muth S, Ding D, Thomas DL 2nd, Blair AB, Tsujikawa T, Coussens L, Jaffee EM, Zheng L.

J Immunother Cancer. 2018 Nov 13;6(1):118. doi: 10.1186/s40425-018-0435-6.


Advanced liver fibrosis and care continuum in emergency department patients with chronic hepatitis C.

Hsieh YH, Signer D, Patel AV, Viertel V, Saheed M, Irvin R, Sulkowski MS, Thomas DL, Rothman RE.

Am J Emerg Med. 2019 Feb;37(2):286-290. doi: 10.1016/j.ajem.2018.08.067. Epub 2018 Aug 29.


Creating demand for long-acting formulations for the treatment and prevention of HIV, tuberculosis, and viral hepatitis.

Flexner C, Thomas DL, Swindells S.

Curr Opin HIV AIDS. 2019 Jan;14(1):13-20. doi: 10.1097/COH.0000000000000510.


Comparison of hepatitis C virus testing recommendations in high-income countries.

Irvin R, Ward K, Agee T, Nelson NP, Vellozzi C, Thomas DL, Millman AJ.

World J Hepatol. 2018 Oct 27;10(10):743-751. doi: 10.4254/wjh.v10.i10.743.


Effect of Fluorinert on the Histological Properties of Formalin-Fixed Human Brain Tissue.

Iglesias JE, Crampsie S, Strand C, Tachrount M, Thomas DL, Holton JL.

J Neuropathol Exp Neurol. 2018 Dec 1;77(12):1085-1090. doi: 10.1093/jnen/nly098.


Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference.

Young AL, Marinescu RV, Oxtoby NP, Bocchetta M, Yong K, Firth NC, Cash DM, Thomas DL, Dick KM, Cardoso J, van Swieten J, Borroni B, Galimberti D, Masellis M, Tartaglia MC, Rowe JB, Graff C, Tagliavini F, Frisoni GB, Laforce R Jr, Finger E, de Mendonça A, Sorbi S, Warren JD, Crutch S, Fox NC, Ourselin S, Schott JM, Rohrer JD, Alexander DC; Genetic FTD Initiative (GENFI); Alzheimer’s Disease Neuroimaging Initiative (ADNI).

Nat Commun. 2018 Oct 15;9(1):4273. doi: 10.1038/s41467-018-05892-0.


Identification of a Shared Cytochrome p4502E1 Epitope Found in Anesthetic Drug-Induced and Viral Hepatitis.

McCarthy EK, Vakos A, Cottagiri M, Mantilla JJ, Santhanam L, Thomas DL, Amzel LM, Rose NR, Njoku DB.

mSphere. 2018 Oct 10;3(5). pii: e00453-18. doi: 10.1128/mSphere.00453-18. Erratum in: mSphere. 2018 Dec 5;3(6):. Mantila, Joel J [corrected to Mantilla, Joel J].


A straight to first diagnostic procedure pathway for suspected colorectal cancer.

Williams DM, Mehta G, Thomas DL, Atcha T, Willis M, Sallami Z.

Br J Hosp Med (Lond). 2018 Oct 2;79(10):594. doi: 10.12968/hmed.2018.79.10.594. No abstract available.


Limited Coverage of Hepatitis C Virus Testing in the United States, 2013-2017.

Patel EU, Mehta SH, Boon D, Quinn TC, Thomas DL, Tobian AAR.

Clin Infect Dis. 2019 Apr 8;68(8):1402-1405. doi: 10.1093/cid/ciy803.


Reduced acquisition time PET pharmacokinetic modelling using simultaneous ASL-MRI: proof of concept.

Scott CJ, Jiao J, Melbourne A, Burgos N, Cash DM, De Vita E, Markiewicz PJ, O'Connor A, Thomas DL, Weston PS, Schott JM, Hutton BF, Ourselin S.

J Cereb Blood Flow Metab. 2018 Sep 5:271678X18797343. doi: 10.1177/0271678X18797343. [Epub ahead of print]


CMPK2 and BCL-G are associated with type 1 interferon-induced HIV restriction in humans.

El-Diwany R, Soliman M, Sugawara S, Breitwieser F, Skaist A, Coggiano C, Sangal N, Chattergoon M, Bailey JR, Siliciano RF, Blankson JN, Ray SC, Wheelan SJ, Thomas DL, Balagopal A.

Sci Adv. 2018 Aug 1;4(8):eaat0843. doi: 10.1126/sciadv.aat0843. eCollection 2018 Aug.


In vivo characterization of white matter pathology in premanifest huntington's disease.

Zhang J, Gregory S, Scahill RI, Durr A, Thomas DL, Lehericy S, Rees G, Tabrizi SJ, Zhang H; TrackOn-HD investigators.

Ann Neurol. 2018 Oct;84(4):497-504. doi: 10.1002/ana.25309. Epub 2018 Sep 15.


Non-invasive imaging of CSF-mediated brain clearance pathways via assessment of perivascular fluid movement with diffusion tensor MRI.

Harrison IF, Siow B, Akilo AB, Evans PG, Ismail O, Ohene Y, Nahavandi P, Thomas DL, Lythgoe MF, Wells JA.

Elife. 2018 Jul 31;7. pii: e34028. doi: 10.7554/eLife.34028.


Retained capacity for perceptual learning of degraded speech in primary progressive aphasia and Alzheimer's disease.

Hardy CJD, Marshall CR, Bond RL, Russell LL, Dick K, Ariti C, Thomas DL, Ross SJ, Agustus JL, Crutch SJ, Rohrer JD, Bamiou DE, Warren JD.

Alzheimers Res Ther. 2018 Jul 25;10(1):70. doi: 10.1186/s13195-018-0399-2.


Mapping Deep Gray Matter Iron in Multiple Sclerosis by Using Quantitative Magnetic Susceptibility.

Barkhof F, Thomas DL.

Radiology. 2018 Nov;289(2):497-498. doi: 10.1148/radiol.2018181274. Epub 2018 Jul 17. No abstract available.


HIV-1 Infection and Type 1 Interferon: Navigating Through Uncertain Waters.

Sugawara S, Thomas DL, Balagopal A.

AIDS Res Hum Retroviruses. 2019 Jan;35(1):25-32. doi: 10.1089/AID.2018.0161. Epub 2018 Aug 15.


Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics.

Simner PJ, Miller HB, Breitwieser FP, Pinilla Monsalve G, Pardo CA, Salzberg SL, Sears CL, Thomas DL, Eberhart CG, Carroll KC.

J Clin Microbiol. 2018 Aug 27;56(9). pii: e00472-18. doi: 10.1128/JCM.00472-18. Print 2018 Sep.


Sample-to-Answer Droplet Magnetofluidic Platform for Point-of-Care Hepatitis C Viral Load Quantitation.

Shin DJ, Trick AY, Hsieh YH, Thomas DL, Wang TH.

Sci Rep. 2018 Jun 28;8(1):9793. doi: 10.1038/s41598-018-28124-3.


Emergency departments at the crossroads of intersecting epidemics (HIV, HCV, injection drug use and opioid overdose)-Estimating HCV incidence in an urban emergency department population.

Hsieh YH, Patel AV, Loevinsohn GS, Thomas DL, Rothman RE.

J Viral Hepat. 2018 Nov;25(11):1397-1400. doi: 10.1111/jvh.12948. Epub 2018 Jul 3. No abstract available.


Invited review: Current production trends, farm structures, and economics of the dairy sheep and goat sectors.

Pulina G, Milán MJ, Lavín MP, Theodoridis A, Morin E, Capote J, Thomas DL, Francesconi AHD, Caja G.

J Dairy Sci. 2018 Aug;101(8):6715-6729. doi: 10.3168/jds.2017-14015. Epub 2018 May 30. Review.


Clinical Features of Guillain-Barré Syndrome With vs Without Zika Virus Infection, Puerto Rico, 2016.

Dirlikov E, Major CG, Medina NA, Lugo-Robles R, Matos D, Muñoz-Jordan JL, Colon-Sanchez C, Garcia M, Olivero-Segarra M, Malave G, Rodríguez-Vega GM, Thomas DL, Waterman SH, Sejvar JJ, Luciano CA, Sharp TM, Rivera-García B.

JAMA Neurol. 2018 Sep 1;75(9):1089-1097. doi: 10.1001/jamaneurol.2018.1058.


Hepatitis C care continuum and associated barriers among people who inject drugs in Chennai, India.

Patel EU, Solomon SS, Mcfall AM, Srikrishnan AK, Pradeep A, Nandagopal P, Laeyendecker O, Tobian AAR, Thomas DL, Sulkowski MS, Kumar MS, Mehta SH.

Int J Drug Policy. 2018 Jul;57:51-60. doi: 10.1016/j.drugpo.2018.03.023. Epub 2018 Apr 19.


An Education and Field Experience Program to Increase Detection of Human Immunodeficiency Virus and Hepatitis C Virus.

Irvin R, McAdams-Mahmoud A, White JJ, Grant Z, Falade-Nwulia O, Sherman SG, Beyrer C, Sulkowski MS, Thomas DL, Mehta SH, Chaisson RE.

Prog Community Health Partnersh. 2018;12(1):101-109. doi: 10.1353/cpr.2018.0011.


Cortical microstructure in young onset Alzheimer's disease using neurite orientation dispersion and density imaging.

Parker TD, Slattery CF, Zhang J, Nicholas JM, Paterson RW, Foulkes AJM, Malone IB, Thomas DL, Modat M, Cash DM, Crutch SJ, Alexander DC, Ourselin S, Fox NC, Zhang H, Schott JM.

Hum Brain Mapp. 2018 Jul;39(7):3005-3017. doi: 10.1002/hbm.24056. Epub 2018 Mar 25.


Integrative analysis of methylomic and transcriptomic data in fetal sheep muscle tissues in response to maternal diet during pregnancy.

Namous H, Peñagaricano F, Del Corvo M, Capra E, Thomas DL, Stella A, Williams JL, Marsan PA, Khatib H.

BMC Genomics. 2018 Feb 6;19(1):123. doi: 10.1186/s12864-018-4509-0.


Quantifying multiple sclerosis pathology in post mortem spinal cord using MRI.

Schmierer K, McDowell A, Petrova N, Carassiti D, Thomas DL, Miquel ME.

Neuroimage. 2018 Nov 15;182:251-258. doi: 10.1016/j.neuroimage.2018.01.052. Epub 2018 Jan 31. Review.

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