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Differential Outcomes and Biologic Markers of Radiation-Associated vs. Sporadic Osteosarcoma: A Single-Institution Experience.

Siontis BL, McHugh JB, Roberts E, Zhao L, Thomas DG, Owen D, Baker LH, Biermann JS, Schuetze SM, Chugh R.

Front Oncol. 2020 Jan 22;9:1523. doi: 10.3389/fonc.2019.01523. eCollection 2019.


TTK inhibition radiosensitizes basal-like breast cancer through impaired homologous recombination.

Chandler BC, Moubadder L, Ritter CL, Liu M, Cameron M, Wilder-Romans K, Zhang A, Pesch AM, Michmerhuizen AR, Hirsh N, Androsiglio M, Ward T, Olsen E, Niknafs YS, Merajver S, Thomas DG, Brown PH, Lawrence TS, Nyati S, Pierce LJ, Chinnaiyan A, Speers C.

J Clin Invest. 2020 Feb 3;130(2):958-973. doi: 10.1172/JCI130435.


Iodine supplementation of lactating women and assessment of infant visual information processing and maternal and infant thyroid function: A randomized trial.

Gebreegziabher T, Woltamo T, Thomas DG, Kennedy TS, Stoecker BJ.

PLoS One. 2019 Oct 7;14(10):e0223348. doi: 10.1371/journal.pone.0223348. eCollection 2019.


Anti-Inflammatory Effects of HDL (High-Density Lipoprotein) in Macrophages Predominate Over Proinflammatory Effects in Atherosclerotic Plaques.

Fotakis P, Kothari V, Thomas DG, Westerterp M, Molusky MM, Altin E, Abramowicz S, Wang N, He Y, Heinecke JW, Bornfeldt KE, Tall AR.

Arterioscler Thromb Vasc Biol. 2019 Dec;39(12):e253-e272. doi: 10.1161/ATVBAHA.119.313253. Epub 2019 Oct 3.


Time-dependent behavioral data from zebrafish reveals novel signatures of chemical toxicity using point of departure analysis.

Thomas DG, Shankaran H, Truong L, Tanguay RL, Waters KM.

Comput Toxicol. 2019 Feb;9:50-60. doi: 10.1016/j.comtox.2018.11.001. Epub 2018 Nov 10.


Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples.

Nuñez JR, Colby SM, Thomas DG, Tfaily MM, Tolic N, Ulrich EM, Sobus JR, Metz TO, Teeguarden JG, Renslow RS.

J Chem Inf Model. 2019 Sep 23;59(9):4052-4060. doi: 10.1021/acs.jcim.9b00444. Epub 2019 Aug 20.


PARP1 Inhibition Radiosensitizes Models of Inflammatory Breast Cancer to Ionizing Radiation.

Michmerhuizen AR, Pesch AM, Moubadder L, Chandler BC, Wilder-Romans K, Cameron M, Olsen E, Thomas DG, Zhang A, Hirsh N, Ritter CL, Liu M, Nyati S, Pierce LJ, Jagsi R, Speers C.

Mol Cancer Ther. 2019 Nov;18(11):2063-2073. doi: 10.1158/1535-7163.MCT-19-0520. Epub 2019 Aug 14.


Quantifying Activity Levels After Sport-Related Concussion Using Actigraph and Mobile (mHealth) Technologies.

Huber DL, Thomas DG, Danduran M, Meier TB, McCrea MA, Nelson LD.

J Athl Train. 2019 Sep;54(9):929-938. doi: 10.4085/1062-6050-93-18. Epub 2019 Aug 14.


Targeting Mechanoresponsive Proteins in Pancreatic Cancer: 4-Hydroxyacetophenone Blocks Dissemination and Invasion by Activating MYH14.

Surcel A, Schiffhauer ES, Thomas DG, Zhu Q, DiNapoli KT, Herbig M, Otto O, West-Foyle H, Jacobi A, Kräter M, Plak K, Guck J, Jaffee EM, Iglesias PA, Anders RA, Robinson DN.

Cancer Res. 2019 Sep 15;79(18):4665-4678. doi: 10.1158/0008-5472.CAN-18-3131. Epub 2019 Jul 29.


Felis catus papillomavirus type 2 virus-like particle vaccine is safe and immunogenic but does not reduce FcaPV-2 viral loads in adult cats.

Thomson NA, Howe L, Weidgraaf K, Thomas DG, Young V, Ward VK, Munday JS.

Vet Immunol Immunopathol. 2019 Jul;213:109888. doi: 10.1016/j.vetimm.2019.109888. Epub 2019 Jun 28.


An integrated experimental-computational approach for predicting virulence in New Zealand white rabbits and humans following inhalation exposure to Bacillus anthracis spores.

Hess BM, Thomas DG, Weber TJ, Hutchison JR, Straub TM, Bruckner-Lea CJ, Powell JD, Kabilan S, Corley RA.

PLoS One. 2019 Jul 1;14(7):e0219160. doi: 10.1371/journal.pone.0219160. eCollection 2019.


Addition of plant dietary fibre to a raw red meat high protein, high fat diet, alters the faecal bacteriome and organic acid profiles of the domestic cat (Felis catus).

Butowski CF, Thomas DG, Young W, Cave NJ, McKenzie CM, Rosendale DI, Bermingham EN.

PLoS One. 2019 May 1;14(5):e0216072. doi: 10.1371/journal.pone.0216072. eCollection 2019.


EWSR1-NFATC2 Translocation-associated Sarcoma Clinicopathologic Findings in a Rare Aggressive Primary Bone or Soft Tissue Tumor.

Wang GY, Thomas DG, Davis JL, Ng T, Patel RM, Harms PW, Betz BL, Schuetze SM, McHugh JB, Horvai AE, Cho SJ, Lucas DR.

Am J Surg Pathol. 2019 Aug;43(8):1112-1122. doi: 10.1097/PAS.0000000000001260.


ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries.

Colby SM, Thomas DG, Nuñez JR, Baxter DJ, Glaesemann KR, Brown JM, Pirrung MA, Govind N, Teeguarden JG, Metz TO, Renslow RS.

Anal Chem. 2019 Apr 2;91(7):4346-4356. doi: 10.1021/acs.analchem.8b04567. Epub 2019 Mar 6.


Doxorubicin plus the IGF-1R antibody cixutumumab in soft tissue sarcoma: a phase I study using the TITE-CRM model.

Chugh R, Griffith KA, Davis EJ, Thomas DG, Zavala JD, Metko G, Brockstein B, Undevia SD, Stadler WM, Schuetze SM.

Ann Oncol. 2019 Aug 1;30(8):1405. doi: 10.1093/annonc/mdy557. No abstract available.


LXR Suppresses Inflammatory Gene Expression and Neutrophil Migration through cis-Repression and Cholesterol Efflux.

Thomas DG, Doran AC, Fotakis P, Westerterp M, Antonson P, Jiang H, Jiang XC, Gustafsson JÅ, Tabas I, Tall AR.

Cell Rep. 2018 Dec 26;25(13):3774-3785.e4. doi: 10.1016/j.celrep.2018.11.100.


Association of B7-H4, PD-L1, and tumor infiltrating lymphocytes with outcomes in breast cancer.

Altan M, Kidwell KM, Pelekanou V, Carvajal-Hausdorf DE, Schalper KA, Toki MI, Thomas DG, Sabel MS, Hayes DF, Rimm DL.

NPJ Breast Cancer. 2018 Dec 10;4:40. doi: 10.1038/s41523-018-0095-1. eCollection 2018.


All that is silver is not toxic: silver ion and particle kinetics reveals the role of silver ion aging and dosimetry on the toxicity of silver nanoparticles.

Smith JN, Thomas DG, Jolley H, Kodali VK, Littke MH, Munusamy P, Baer DR, Gaffrey MJ, Thrall BD, Teeguarden JG.

Part Fibre Toxicol. 2018 Dec 5;15(1):47. doi: 10.1186/s12989-018-0283-z.


Canonical Wnt/β-catenin signaling activation in soft-tissue sarcomas: A comparative study of synovial sarcoma and leiomyosarcoma.

Briski LM, Thomas DG, Patel RM, Lawlor ER, Chugh R, McHugh JB, Lucas DR.

Rare Tumors. 2018 Nov 25;10:2036361318813431. doi: 10.1177/2036361318813431. eCollection 2018.


Efficient discrimination of natural stereoisomers of chicoric acid, an HIV-1 integrase inhibitor.

Nobela O, Renslow RS, Thomas DG, Colby SM, Sitha S, Njobeh PB, du Preez L, Tugizimana F, Madala NE.

J Photochem Photobiol B. 2018 Dec;189:258-266. doi: 10.1016/j.jphotobiol.2018.10.025. Epub 2018 Nov 2.


Enhancing the Radiation Response in KRAS Mutant Colorectal Cancers Using the c-Met Inhibitor Crizotinib.

Cuneo KC, Mehta RK, Kurapati H, Thomas DG, Lawrence TS, Nyati MK.

Transl Oncol. 2019 Feb;12(2):209-216. doi: 10.1016/j.tranon.2018.10.005. Epub 2018 Nov 6.


Wheat particle size, insoluble fibre sources and whole wheat feeding influence gizzard musculature and nutrient utilisation to different extents in broiler chickens.

Abdollahi MR, Zaefarian F, Hunt H, Anwar MN, Thomas DG, Ravindran V.

J Anim Physiol Anim Nutr (Berl). 2019 Jan;103(1):146-161. doi: 10.1111/jpn.13019. Epub 2018 Nov 8.


An automated framework for NMR chemical shift calculations of small organic molecules.

Yesiltepe Y, Nuñez JR, Colby SM, Thomas DG, Borkum MI, Reardon PN, Washton NM, Metz TO, Teeguarden JG, Govind N, Renslow RS.

J Cheminform. 2018 Oct 26;10(1):52. doi: 10.1186/s13321-018-0305-8.


Explicit ions/implicit water generalized Born model for nucleic acids.

Tolokh IS, Thomas DG, Onufriev AV.

J Chem Phys. 2018 May 21;148(19):195101. doi: 10.1063/1.5027260.


Isolation of Tryptanthrin and Reassessment of Evidence for Its Isobaric Isostere Wrightiadione in Plants of the Wrightia Genus.

Garcellano RC, Moinuddin SGA, Young RP, Zhou M, Bowden ME, Renslow RS, Yesiltepe Y, Thomas DG, Colby SM, Chouinard CD, Nagy G, Attah IK, Ibrahim YM, Ma R, Franzblau SG, Lewis NG, Aguinaldo AM, Cort JR.

J Nat Prod. 2019 Mar 22;82(3):440-448. doi: 10.1021/acs.jnatprod.8b00567. Epub 2018 Oct 8.


Integration among databases and data sets to support productive nanotechnology: Challenges and recommendations.

Karcher S, Willighagen EL, Rumble J, Ehrhart F, Evelo CT, Fritts M, Gaheen S, Harper SL, Hoover MD, Jeliazkova N, Lewinski N, Marchese Robinson RL, Mills KC, Mustad AP, Thomas DG, Tsiliki G, Ogilvie Hendren C.

NanoImpact. 2018 Jan;9:85-101. doi: 10.1016/j.impact.2017.11.002.


Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase.

Xu YF, Lu W, Chen JC, Johnson SA, Gibney PA, Thomas DG, Brown G, May AL, Campagna SR, Yakunin AF, Botstein D, Rabinowitz JD.

ACS Chem Biol. 2018 Oct 19;13(10):3011-3020. doi: 10.1021/acschembio.8b00804. Epub 2018 Oct 4.


The Role of Specific Chemokines in the Amelioration of Colitis by Appendicitis and Appendectomy.

Cheluvappa R, Thomas DG, Selvendran S.

Biomolecules. 2018 Jul 20;8(3). pii: E59. doi: 10.3390/biom8030059.


The Fecal Microbiota in the Domestic Cat (Felis catus) Is Influenced by Interactions Between Age and Diet; A Five Year Longitudinal Study.

Bermingham EN, Young W, Butowski CF, Moon CD, Maclean PH, Rosendale D, Cave NJ, Thomas DG.

Front Microbiol. 2018 Jun 19;9:1231. doi: 10.3389/fmicb.2018.01231. eCollection 2018.


Nonlinear mixed models of growth curves from domestic shorthair cats in a breeding colony, housed in a seasonal facility to predict obesity.

Cave NJ, Bridges JP, Weidgraaf K, Thomas DG.

J Anim Physiol Anim Nutr (Berl). 2018 Oct;102(5):1390-1400. doi: 10.1111/jpn.12930. Epub 2018 Jun 22.


Association of Dasatinib With Progression-Free Survival Among Patients With Advanced Gastrointestinal Stromal Tumors Resistant to Imatinib.

Schuetze SM, Bolejack V, Thomas DG, von Mehren M, Patel S, Samuels B, Choy E, D'Amato G, Staddon AP, Ganjoo KN, Chow WA, Rushing DA, Forscher CA, Priebat DA, Loeb DM, Chugh R, Okuno S, Reinke DK, Baker LH.

JAMA Oncol. 2018 Jun 1;4(6):814-820. doi: 10.1001/jamaoncol.2018.0601.


Effect of kibble and raw meat diets on peripheral blood mononuclear cell gene expression profile in dogs.

Anderson RC, Armstrong KM, Young W, Maclean P, Thomas DG, Bermingham EN.

Vet J. 2018 Apr;234:7-10. doi: 10.1016/j.tvjl.2018.01.005. Epub 2018 Feb 7.


Silencing of Long Noncoding RNA MIR22HG Triggers Cell Survival/Death Signaling via Oncogenes YBX1, MET, and p21 in Lung Cancer.

Su W, Feng S, Chen X, Yang X, Mao R, Guo C, Wang Z, Thomas DG, Lin J, Reddy RM, Orringer MB, Chang AC, Yang Z, Beer DG, Chen G.

Cancer Res. 2018 Jun 15;78(12):3207-3219. doi: 10.1158/0008-5472.CAN-18-0222. Epub 2018 Apr 18.


ISD3: a particokinetic model for predicting the combined effects of particle sedimentation, diffusion and dissolution on cellular dosimetry for in vitro systems.

Thomas DG, Smith JN, Thrall BD, Baer DR, Jolley H, Munusamy P, Kodali V, Demokritou P, Cohen J, Teeguarden JG.

Part Fibre Toxicol. 2018 Jan 25;15(1):6. doi: 10.1186/s12989-018-0243-7.


Atomic Radius and Charge Parameter Uncertainty in Biomolecular Solvation Energy Calculations.

Yang X, Lei H, Gao P, Thomas DG, Mobley DL, Baker NA.

J Chem Theory Comput. 2018 Feb 13;14(2):759-767. doi: 10.1021/acs.jctc.7b00905. Epub 2018 Jan 29.


SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.

Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, Blackwell AE, Swinford G, Sausen J, Kurulugama RT, Eno N, Darland E, Stafford G, Fjeldsted J, Metz TO, Teeguarden JG, Smith RD, Baker ES.

Clin Mass Spectrom. 2016 Dec;2:1-10. doi: 10.1016/j.clinms.2016.11.002. Epub 2016 Dec 29.


Comprehensive Mutation and Copy Number Profiling in Archived Circulating Breast Cancer Tumor Cells Documents Heterogeneous Resistance Mechanisms.

Paoletti C, Cani AK, Larios JM, Hovelson DH, Aung K, Darga EP, Cannell EM, Baratta PJ, Liu CJ, Chu D, Yazdani M, Blevins AR, Sero V, Tokudome N, Thomas DG, Gersch C, Schott AF, Wu YM, Lonigro R, Robinson DR, Chinnaiyan AM, Bischoff FZ, Johnson MD, Park BH, Hayes DF, Rae JM, Tomlins SA.

Cancer Res. 2018 Feb 15;78(4):1110-1122. doi: 10.1158/0008-5472.CAN-17-2686. Epub 2017 Dec 12.


Plasma Protein Turnover Rates in Rats Using Stable Isotope Labeling, Global Proteomics, and Activity-Based Protein Profiling.

Smith JN, Tyrrell KJ, Hansen JR, Thomas DG, Murphree TA, Shukla A, Luders T, Madden JM, Li Y, Wright AT, Piehowski PD.

Anal Chem. 2017 Dec 19;89(24):13559-13566. doi: 10.1021/acs.analchem.7b03984. Epub 2017 Dec 6.


Microfibers as Physiologically Relevant Platforms for Creation of 3D Cell Cultures.

McNamara MC, Sharifi F, Wrede AH, Kimlinger DF, Thomas DG, Vander Wiel JB, Chen Y, Montazami R, Hashemi NN.

Macromol Biosci. 2017 Dec;17(12). doi: 10.1002/mabi.201700279. Epub 2017 Nov 17. Review.


Onychomadesis as a Late Complication of Hand-Foot-Mouth Disease: A Case Series Shedding Light on Nail Shedding.

Kuehnel NA, Thach S, Thomas DG.

Pediatr Emerg Care. 2017 Nov;33(11):e122-e123. doi: 10.1097/PEC.0000000000001292.


In vivo near-infrared imaging of ErbB2 expressing breast tumors with dual-axes confocal endomicroscopy using a targeted peptide.

Gao Z, Li G, Li X, Zhou J, Duan X, Chen J, Joshi BP, Kuick R, Khoury B, Thomas DG, Fields T, Sabel MS, Appelman HD, Zhou Q, Li H, Kozloff K, Wang TD.

Sci Rep. 2017 Oct 31;7(1):14404. doi: 10.1038/s41598-017-13735-z.


Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria.

Guo Z, Sevrioukova IF, Denisov IG, Zhang X, Chiu TL, Thomas DG, Hanse EA, Cuellar RAD, Grinkova YV, Langenfeld VW, Swedien DS, Stamschror JD, Alvarez J, Luna F, Galván A, Bae YK, Wulfkuhle JD, Gallagher RI, Petricoin EF Rd, Norris B, Flory CM, Schumacher RJ, O'Sullivan MG, Cao Q, Chu H, Lipscomb JD, Atkins WM, Gupta K, Kelekar A, Blair IA, Capdevila JH, Falck JR, Sligar SG, Poulos TL, Georg GI, Ambrose E, Potter DA.

Cell Chem Biol. 2017 Oct 19;24(10):1314. doi: 10.1016/j.chembiol.2017.09.012. No abstract available.


Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process.

Song HS, Thomas DG, Stegen JC, Li M, Liu C, Song X, Chen X, Fredrickson JK, Zachara JM, Scheibe TD.

Front Microbiol. 2017 Sep 29;8:1866. doi: 10.3389/fmicb.2017.01866. eCollection 2017.


Macronutrient intake of dogs, self-selecting diets varying in composition offered ad libitum.

Roberts MT, Bermingham EN, Cave NJ, Young W, McKenzie CM, Thomas DG.

J Anim Physiol Anim Nutr (Berl). 2018 Apr;102(2):568-575. doi: 10.1111/jpn.12794. Epub 2017 Oct 12.


Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria.

Guo Z, Sevrioukova IF, Denisov IG, Zhang X, Chiu TL, Thomas DG, Hanse EA, Cuellar RAD, Grinkova YV, Langenfeld VW, Swedien DS, Stamschror JD, Alvarez J, Luna F, Galván A, Bae YK, Wulfkuhle JD, Gallagher RI, Petricoin EF Rd, Norris B, Flory CM, Schumacher RJ, O'Sullivan MG, Cao Q, Chu H, Lipscomb JD, Atkins WM, Gupta K, Kelekar A, Blair IA, Capdevila JH, Falck JR, Sligar SG, Poulos TL, Georg GI, Ambrose E, Potter DA.

Cell Chem Biol. 2017 Oct 19;24(10):1259-1275.e6. doi: 10.1016/j.chembiol.2017.08.009. Epub 2017 Sep 14. Erratum in: Cell Chem Biol. 2017 Oct 19;24(10):1314.


Gynecologic melanomas: A clinicopathologic and molecular analysis.

Udager AM, Frisch NK, Hong LJ, Stasenko M, Johnston CM, Liu JR, Chan MP, Harms PW, Fullen DR, Orsini A, Thomas DG, Lowe L, Patel RM.

Gynecol Oncol. 2017 Nov;147(2):351-357. doi: 10.1016/j.ygyno.2017.08.023. Epub 2017 Aug 24.


BMTP-11 is active in preclinical models of human osteosarcoma and a candidate targeted drug for clinical translation.

Lewis VO, Devarajan E, Cardó-Vila M, Thomas DG, Kleinerman ES, Marchiò S, Sidman RL, Pasqualini R, Arap W.

Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):8065-8070. doi: 10.1073/pnas.1704173114. Epub 2017 Jul 11.


The effect of changing the moisture levels of dry extruded and wet canned diets on physical activity in cats.

Thomas DG, Post M, Bosch G.

J Nutr Sci. 2017 Apr 17;6:e9. doi: 10.1017/jns.2017.9. eCollection 2017.


Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas.

Rolland DCM, Basrur V, Jeon YK, McNeil-Schwalm C, Fermin D, Conlon KP, Zhou Y, Ng SY, Tsou CC, Brown NA, Thomas DG, Bailey NG, Omenn GS, Nesvizhskii AI, Root DE, Weinstock DM, Faryabi RB, Lim MS, Elenitoba-Johnson KSJ.

Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):6581-6586. doi: 10.1073/pnas.1701263114. Epub 2017 Jun 12.


The fifth sense: Mechanosensory regulation of alpha-actinin-4 and its relevance for cancer metastasis.

Thomas DG, Robinson DN.

Semin Cell Dev Biol. 2017 Nov;71:68-74. doi: 10.1016/j.semcdb.2017.05.024. Epub 2017 Jun 1. Review.

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