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Urinary cotinine is as good a biomarker as serum cotinine for cigarette smoking exposure and lung cancer risk prediction.

Thomas CE, Wang R, Adams-Haduch J, Murphy SE, Ueland PM, Midttun O, Brennan P, Johannson M, Gao YT, Yuan JM.

Cancer Epidemiol Biomarkers Prev. 2019 Nov 4. pii: cebp.0653.2019. doi: 10.1158/1055-9965.EPI-19-0653. [Epub ahead of print]


Quark-Mass Dependence of Elastic πK Scattering from QCD.

Wilson DJ, Briceño RA, Dudek JJ, Edwards RG, Thomas CE; Hadron Spectrum Collaboration.

Phys Rev Lett. 2019 Jul 26;123(4):042002. doi: 10.1103/PhysRevLett.123.042002.


Environmental Drivers of Questing Activity of Juvenile Black-Legged Ticks (Acari: Ixodidae): Temperature, Desiccation Risk, and Diel Cycles.

Thomas CE, Burton ES, Brunner JL.

J Med Entomol. 2019 Aug 2. pii: tjz126. doi: 10.1093/jme/tjz126. [Epub ahead of print]


The impact of external innovation on new drug approvals: A retrospective analysis.

Liu X, Thomas CE, Felder CC.

Int J Pharm. 2019 May 30;563:273-281. doi: 10.1016/j.ijpharm.2018.12.093. Epub 2019 Jan 18. Review.


Dual laser holography for in situ measurement of plasma facing component erosion (invited).

Biewer TM, Sawyer JC, Smith CD, Thomas CE.

Rev Sci Instrum. 2018 Oct;89(10):10J123. doi: 10.1063/1.5039628.


Percutaneous Gastrostomy Device for the Treatment of Class II and Class III Obesity: Results of a Randomized Controlled Trial.

Thompson CC, Abu Dayyeh BK, Kushner R, Sullivan S, Schorr AB, Amaro A, Apovian CM, Fullum T, Zarrinpar A, Jensen MD, Stein AC, Edmundowicz S, Kahaleh M, Ryou M, Bohning JM, Ginsberg G, Huang C, Tran DD, Glaser JP, Martin JA, Jaffe DL, Farraye FA, Ho SB, Kumar N, Harakal D, Young M, Thomas CE, Shukla AP, Ryan MB, Haas M, Goldsmith H, McCrea J, Aronne LJ.

Am J Gastroenterol. 2017 Mar;112(3):447-457. doi: 10.1038/ajg.2016.500. Epub 2016 Dec 6.


Design of a digital holography system for PFC erosion measurements on Proto-MPEX.

Thomas CE Jr, Biewer TM, Baylor LR, Combs SK, Meitner SJ, Rapp J, Hillis DL, Granstedt EM, Majeski R, Kaita R.

Rev Sci Instrum. 2016 Nov;87(11):11D624.


Low adoption of weight loss medications: A comparison of prescribing patterns of antiobesity pharmacotherapies and SGLT2s.

Thomas CE, Mauer EA, Shukla AP, Rathi S, Aronne LJ.

Obesity (Silver Spring). 2016 Sep;24(9):1955-61. doi: 10.1002/oby.21533.


Network biology concepts in complex disease comorbidities.

Hu JX, Thomas CE, Brunak S.

Nat Rev Genet. 2016 Oct;17(10):615-29. doi: 10.1038/nrg.2016.87. Epub 2016 Aug 8. Review.


Bacterial sensitivity assessment of multifunctional polymeric coatings for airway stents.

Goodfriend AC, Welch TR, Thomas CE, Nguyen KT, Johnson RF, Forbess JM.

J Biomed Mater Res B Appl Biomater. 2017 Oct;105(7):2153-2161. doi: 10.1002/jbm.b.33754. Epub 2016 Jul 18.


When procedures meet practice in community pharmacies: qualitative insights from pharmacists and pharmacy support staff.

Thomas CE, Phipps DL, Ashcroft DM.

BMJ Open. 2016 Jun 6;6(6):e010851. doi: 10.1136/bmjopen-2015-010851.


High-speed digital holography for neutral gas and electron density imaging.

Granstedt EM, Thomas CE Jr, Kaita R, Majeski R, Baylor LR, Meitner SJ, Combs SK.

Rev Sci Instrum. 2016 May;87(5):053507. doi: 10.1063/1.4949505.


A new member of the family Totiviridae associated with arboreal ants (Camponotus nipponicus).

Koyama S, Sakai C, Thomas CE, Nunoura T, Urayama S.

Arch Virol. 2016 Jul;161(7):2043-5. doi: 10.1007/s00705-016-2876-x. Epub 2016 May 2.


Contemporary evolution of host plant range expansion in an introduced herbivorous beetle Ophraella communa.

Fukano Y, Doi H, Thomas CE, Takata M, Koyama S, Satoh T.

J Evol Biol. 2016 Apr;29(4):757-65. doi: 10.1111/jeb.12824. Epub 2016 Jan 22.


Resonant π^{+}γ→π^{+}π^{0} Amplitude from Quantum Chromodynamics.

Briceño RA, Dudek JJ, Edwards RG, Shultz CJ, Thomas CE, Wilson DJ; Hadron Spectrum Collaboration.

Phys Rev Lett. 2015 Dec 11;115(24):242001. doi: 10.1103/PhysRevLett.115.242001. Epub 2015 Dec 8.


Control of parental investment changes plastically over time with residual reproductive value.

Takata M, Doi H, Thomas CE, Koyama S.

J Evol Biol. 2016 Jan;29(1):199-204. doi: 10.1111/jeb.12775. Epub 2015 Nov 9.


Vitamin D status is inversely associated with anemia and serum erythropoietin during pregnancy.

Thomas CE, Guillet R, Queenan RA, Cooper EM, Kent TR, Pressman EK, Vermeylen FM, Roberson MS, O'Brien KO.

Am J Clin Nutr. 2015 Nov;102(5):1088-95. doi: 10.3945/ajcn.115.116756. Epub 2015 Oct 7.


TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen.

Marquard AM, Birkbak NJ, Thomas CE, Favero F, Krzystanek M, Lefebvre C, Ferté C, Jamal-Hanjani M, Wilson GA, Shafi S, Swanton C, André F, Szallasi Z, Eklund AC.

BMC Med Genomics. 2015 Oct 1;8:58. doi: 10.1186/s12920-015-0130-0.


Food Order Has a Significant Impact on Postprandial Glucose and Insulin Levels.

Shukla AP, Iliescu RG, Thomas CE, Aronne LJ.

Diabetes Care. 2015 Jul;38(7):e98-9. doi: 10.2337/dc15-0429. No abstract available.


Digital holography for in situ real-time measurement of plasma-facing-component erosion.

Thomas CE Jr, Granstedt EM, Biewer TM, Baylor LR, Combs SK, Meitner SJ, Hillis DL, Majeski R, Kaita R.

Rev Sci Instrum. 2014 Nov;85(11):11D810. doi: 10.1063/1.4886435.


Resonances in coupled πK-ηK scattering from quantum chromodynamics.

Dudek JJ, Edwards RG, Thomas CE, Wilson DJ; Hadron Spectrum Collaboration.

Phys Rev Lett. 2014 Oct 31;113(18):182001. Epub 2014 Oct 30.


Duodenal absorption and tissue utilization of dietary heme and nonheme iron differ in rats.

Cao C, Thomas CE, Insogna KL, O'Brien KO.

J Nutr. 2014 Nov;144(11):1710-7. doi: 10.3945/jn.114.197939. Epub 2014 Sep 10.


Discovery of a potent, dual serotonin and norepinephrine reuptake inhibitor.

Dreyfus N, Myers JK, Badescu VO, de Frutos O, de la Puente ML, Ding C, Filla SA, Fynboe K, Gernert DL, Heinz BA, Hemrick-Luecke SK, Johnson KW, Johnson MP, López P, Love PL, Martin LJ, Masquelin T, McCoy MJ, Mendiola J, Morrow D, Muhlhauser M, Pascual G, Perun TJ, Pfeifer LA, Phebus LA, Richards SJ, Rincón JA, Seest EP, Shah J, Shaojuan J, Simmons RM, Stephenson GA, Tromiczak EG, Thompson LK, Walter MW, Weber WW, Zarrinmayeh H, Thomas CE, Joshi E, Iyengar S, Johansson AM.

ACS Med Chem Lett. 2013 May 7;4(6):560-4. doi: 10.1021/ml400049p. eCollection 2013 Jun 13.


Asynchronous hatching in the burying beetle, Nicrophorus quadripunctatus, maxmizes parental fitness.

Takata M, Hayashi S, Thomas CE, Koyama S, Satoh T, Fugo H.

J Evol Biol. 2014 Sep;27(9):1830-6. doi: 10.1111/jeb.12433. Epub 2014 Jun 4.


ATP6V0C knockdown in neuroblastoma cells alters autophagy-lysosome pathway function and metabolism of proteins that accumulate in neurodegenerative disease.

Mangieri LR, Mader BJ, Thomas CE, Taylor CA, Luker AM, Tse TE, Huisingh C, Shacka JJ.

PLoS One. 2014 Apr 2;9(4):e93257. doi: 10.1371/journal.pone.0093257. eCollection 2014.


Mutation of the conserved calcium-binding motif in Neisseria gonorrhoeae PilC1 impacts adhesion but not piliation.

Cheng Y, Johnson MD, Burillo-Kirch C, Mocny JC, Anderson JE, Garrett CK, Redinbo MR, Thomas CE.

Infect Immun. 2013 Nov;81(11):4280-9. doi: 10.1128/IAI.00493-13. Epub 2013 Sep 3.


MetaRanker 2.0: a web server for prioritization of genetic variation data.

Pers TH, Dworzyński P, Thomas CE, Lage K, Brunak S.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W104-8. doi: 10.1093/nar/gkt387. Epub 2013 May 22.


Increasing dietary protein acutely augments intestinal iron transporter expression and significantly increases iron absorption in rats.

Thomas CE, Gaffney-Stomberg E, Sun BH, O'Brien KO, Kerstetter JE, Insogna KL.

FASEB J. 2013 Jun;27(6):2476-83. doi: 10.1096/fj.12-221945. Epub 2013 Feb 27.


Charting the landscape of tandem BRCT domain-mediated protein interactions.

Woods NT, Mesquita RD, Sweet M, Carvalho MA, Li X, Liu Y, Nguyen H, Thomas CE, Iversen ES Jr, Marsillac S, Karchin R, Koomen J, Monteiro AN.

Sci Signal. 2012 Sep 18;5(242):rs6.


A performance evaluation of three drug-induced liver injury biomarkers in the rat: alpha-glutathione S-transferase, arginase 1, and 4-hydroxyphenyl-pyruvate dioxygenase.

Bailey WJ, Holder D, Patel H, Devlin P, Gonzalez RJ, Hamilton V, Muniappa N, Hamlin DM, Thomas CE, Sistare FD, Glaab WE.

Toxicol Sci. 2012 Dec;130(2):229-44. doi: 10.1093/toxsci/kfs243. Epub 2012 Aug 7.


The impact of assay technology as applied to safety assessment in reducing compound attrition in drug discovery.

Thomas CE, Will Y.

Expert Opin Drug Discov. 2012 Feb;7(2):109-22. doi: 10.1517/17460441.2012.651122. Epub 2012 Jan 9. Review.


Inferring the origin of populations introduced from a genetically structured native range by approximate Bayesian computation: case study of the invasive ladybird Harmonia axyridis.

Lombaert E, Guillemaud T, Thomas CE, Lawson Handley LJ, Li J, Wang S, Pang H, Goryacheva I, Zakharov IA, Jousselin E, Poland RL, Migeon A, Van Lenteren J, DE Clercq P, Berkvens N, Jones W, Estoup A.

Mol Ecol. 2011 Nov;20(22):4654-70. doi: 10.1111/j.1365-294X.2011.05322.x. Epub 2011 Oct 18.


Predictive Power Estimation Algorithm (PPEA)--a new algorithm to reduce overfitting for genomic biomarker discovery.

Liu J, Jolly RA, Smith AT, Searfoss GH, Goldstein KM, Uversky VN, Dunker K, Li S, Thomas CE, Wei T.

PLoS One. 2011;6(9):e24233. doi: 10.1371/journal.pone.0024233. Epub 2011 Sep 15.


Pericellular proteins of the developing mouse tendon: a proteomic analysis.

Smith SM, Thomas CE, Birk DE.

Connect Tissue Res. 2012;53(1):2-13. doi: 10.3109/03008207.2011.602766. Epub 2011 Aug 18.


Vaccines for gonorrhea: can we rise to the challenge?

Zhu W, Chen CJ, Thomas CE, Anderson JE, Jerse AE, Sparling PF.

Front Microbiol. 2011 Jun 3;2:124. doi: 10.3389/fmicb.2011.00124. eCollection 2011.


A database of reaction monitoring mass spectrometry assays for elucidating therapeutic response in cancer.

Remily-Wood ER, Liu RZ, Xiang Y, Chen Y, Thomas CE, Rajyaguru N, Kaufman LM, Ochoa JE, Hazlehurst L, Pinilla-Ibarz J, Lancet J, Zhang G, Haura E, Shibata D, Yeatman T, Smalley KS, Dalton WS, Huang E, Scott E, Bloom GC, Eschrich SA, Koomen JM.

Proteomics Clin Appl. 2011 Aug;5(7-8):383-96. doi: 10.1002/prca.201000115. Epub 2011 Jun 8.


A comparative integrated transcript analysis and functional characterization of differential mechanisms for induction of liver hypertrophy in the rat.

Boitier E, Amberg A, Barbié V, Blichenberg A, Brandenburg A, Gmuender H, Gruhler A, McCarthy D, Meyer K, Riefke B, Raschke M, Schoonen W, Sieber M, Suter L, Thomas CE, Sajot N.

Toxicol Appl Pharmacol. 2011 Apr 15;252(2):85-96. doi: 10.1016/j.taap.2011.01.021. Epub 2011 Feb 26.


High speed digital holography for density and fluctuation measurements (invited).

Thomas CE Jr, Baylor LR, Combs SK, Meitner SJ, Rasmussen DA, Granstedt EM, Majeski RP, Kaita R.

Rev Sci Instrum. 2010 Oct;81(10):10E527. doi: 10.1063/1.3492423.


Intolerance of short arm cast wear by patients with claustrophobia: case report.

Lanigan ED, Thomas CE, Basson MD.

J Hand Surg Am. 2010 May;35(5):743-5. doi: 10.1016/j.jhsa.2010.02.030.


Highly excited and exotic meson spectrum from dynamical lattice QCD.

Dudek JJ, Edwards RG, Peardon MJ, Richards DG, Thomas CE; Hadron Spectrum Collaboration.

Phys Rev Lett. 2009 Dec 31;103(26):262001. Epub 2009 Dec 31.


Urine collection and processing for protein biomarker discovery and quantification.

Thomas CE, Sexton W, Benson K, Sutphen R, Koomen J.

Cancer Epidemiol Biomarkers Prev. 2010 Apr;19(4):953-9. doi: 10.1158/1055-9965.EPI-10-0069. Epub 2010 Mar 23. Review.


Gene transfer into rat brain using adenoviral vectors.

Puntel M, Kroeger KM, Sanderson NS, Thomas CE, Castro MG, Lowenstein PR.

Curr Protoc Neurosci. 2010 Jan;Chapter 4:Unit 4.24. doi: 10.1002/0471142301.ns0424s50.


Neisseria gonorrhoeae activates the proteinase cathepsin B to mediate the signaling activities of the NLRP3 and ASC-containing inflammasome.

Duncan JA, Gao X, Huang MT, O'Connor BP, Thomas CE, Willingham SB, Bergstralh DT, Jarvis GA, Sparling PF, Ting JP.

J Immunol. 2009 May 15;182(10):6460-9. doi: 10.4049/jimmunol.0802696.


Strategic applications of toxicogenomics in early drug discovery.

Ryan TP, Stevens JL, Thomas CE.

Curr Opin Pharmacol. 2008 Oct;8(5):654-60. doi: 10.1016/j.coph.2008.07.011. Epub 2008 Sep 17. Review.


Tissue-specific expression and post-translational modification of histone H3 variants.

Garcia BA, Thomas CE, Kelleher NL, Mizzen CA.

J Proteome Res. 2008 Oct;7(10):4225-36. doi: 10.1021/pr800044q. Epub 2008 Aug 14.


Gene transfer into rat brain using adenoviral vectors.

Thomas CE, Abordo-Adesida E, Maleniak TC, Stone D, Gerdes CA, Lowenstein PR.

Curr Protoc Neurosci. 2001 May;Chapter 4:Unit 4.24. doi: 10.1002/0471142301.ns0424s13.


Is it time to reexamine KDOQI aluminum guidelines?

Diskin CJ, Thomas CE.

Am J Kidney Dis. 2006 Nov;48(5):876-7. No abstract available.


In vivo mature immunological synapses forming SMACs mediate clearance of virally infected astrocytes from the brain.

Barcia C, Thomas CE, Curtin JF, King GD, Wawrowsky K, Candolfi M, Xiong WD, Liu C, Kroeger K, Boyer O, Kupiec-Weglinski J, Klatzmann D, Castro MG, Lowenstein PR.

J Exp Med. 2006 Sep 4;203(9):2095-107. Epub 2006 Aug 21.

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