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Items: 1 to 50 of 151

1.

Brain-based ranking of cognitive domains to predict schizophrenia.

Karrer TM, Bassett DS, Derntl B, Gruber O, Aleman A, Jardri R, Laird AR, Fox PT, Eickhoff SB, Grisel O, Varoquaux G, Thirion B, Bzdok D.

Hum Brain Mapp. 2019 Oct 15;40(15):4487-4507. doi: 10.1002/hbm.24716. Epub 2019 Jul 16.

PMID:
31313451
2.

SmartPulse, a machine learning approach for calibration-free dynamic RF shimming: Preliminary study in a clinical environment.

Tomi-Tricot R, Gras V, Thirion B, Mauconduit F, Boulant N, Cherkaoui H, Zerbib P, Vignaud A, Luciani A, Amadon A.

Magn Reson Med. 2019 Dec;82(6):2016-2031. doi: 10.1002/mrm.27870. Epub 2019 Jun 30.

PMID:
31257612
3.

The functional database of the ARCHI project: Potential and perspectives.

Pinel P, Forgeot d'Arc B, Dehaene S, Bourgeron T, Thirion B, Le Bihan D, Poupon C.

Neuroimage. 2019 Aug 15;197:527-543. doi: 10.1016/j.neuroimage.2019.04.056. Epub 2019 May 4.

PMID:
31063817
4.

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation.

Rahim M, Thirion B, Varoquaux G.

Med Image Anal. 2019 May;54:138-148. doi: 10.1016/j.media.2019.03.001. Epub 2019 Mar 15.

PMID:
30903965
5.

Benchmarking functional connectome-based predictive models for resting-state fMRI.

Dadi K, Rahim M, Abraham A, Chyzhyk D, Milham M, Thirion B, Varoquaux G; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2019 May 15;192:115-134. doi: 10.1016/j.neuroimage.2019.02.062. Epub 2019 Mar 2.

PMID:
30836146
6.

Atlases of cognition with large-scale human brain mapping.

Varoquaux G, Schwartz Y, Poldrack RA, Gauthier B, Bzdok D, Poline JB, Thirion B.

PLoS Comput Biol. 2018 Nov 29;14(11):e1006565. doi: 10.1371/journal.pcbi.1006565. eCollection 2018 Nov.

7.

Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants.

Kernbach JM, Yeo BTT, Smallwood J, Margulies DS, Thiebaut de Schotten M, Walter H, Sabuncu MR, Holmes AJ, Gramfort A, Varoquaux G, Thirion B, Bzdok D.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12295-12300. doi: 10.1073/pnas.1804876115. Epub 2018 Nov 12.

8.

Patterns of schizophrenia symptoms: hidden structure in the PANSS questionnaire.

Lefort-Besnard J, Varoquaux G, Derntl B, Gruber O, Aleman A, Jardri R, Sommer I, Thirion B, Bzdok D.

Transl Psychiatry. 2018 Oct 30;8(1):237. doi: 10.1038/s41398-018-0294-4.

9.

Shared endo-phenotypes of default mode dsfunction in attention deficit/hyperactivity disorder and autism spectrum disorder.

Kernbach JM, Satterthwaite TD, Bassett DS, Smallwood J, Margulies D, Krall S, Shaw P, Varoquaux G, Thirion B, Konrad K, Bzdok D.

Transl Psychiatry. 2018 Jul 17;8(1):133. doi: 10.1038/s41398-018-0179-6.

10.

Mapping the asynchrony of cortical maturation in the infant brain: A MRI multi-parametric clustering approach.

Lebenberg J, Mangin JF, Thirion B, Poupon C, Hertz-Pannier L, Leroy F, Adibpour P, Dehaene-Lambertz G, Dubois J.

Neuroimage. 2019 Jan 15;185:641-653. doi: 10.1016/j.neuroimage.2018.07.022. Epub 2018 Jul 11.

PMID:
30017787
11.

Recursive Nearest Agglomeration (ReNA): Fast Clustering for Approximation of Structured Signals.

Hoyos-Idrobo A, Varoquaux G, Kahn J, Thirion B.

IEEE Trans Pattern Anal Mach Intell. 2019 Mar;41(3):669-681. doi: 10.1109/TPAMI.2018.2815524. Epub 2018 Mar 13.

PMID:
29993861
12.

Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping.

Pinho AL, Amadon A, Ruest T, Fabre M, Dohmatob E, Denghien I, Ginisty C, Becuwe-Desmidt S, Roger S, Laurier L, Joly-Testault V, Médiouni-Cloarec G, Doublé C, Martins B, Pinel P, Eger E, Varoquaux G, Pallier C, Dehaene S, Hertz-Pannier L, Thirion B.

Sci Data. 2018 Jun 12;5:180105. doi: 10.1038/sdata.2018.105.

13.

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization.

Bzdok D, Varoquaux G, Thirion B.

Educ Psychol Meas. 2017 Oct;77(5):868-880. doi: 10.1177/0013164416667982. Epub 2016 Oct 6.

14.

Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging.

Bzdok D, Eickenberg M, Varoquaux G, Thirion B.

Inf Process Med Imaging. 2017 Jun;10265:323-335. doi: 10.1007/978-3-319-59050-9_26. Epub 2017 May 23.

15.

Inter-subject Registration of Functional Images: Do We Need Anatomical Images?

Dohmatob E, Varoquaux G, Thirion B.

Front Neurosci. 2018 Feb 14;12:64. doi: 10.3389/fnins.2018.00064. eCollection 2018.

16.

Different shades of default mode disturbance in schizophrenia: Subnodal covariance estimation in structure and function.

Lefort-Besnard J, Bassett DS, Smallwood J, Margulies DS, Derntl B, Gruber O, Aleman A, Jardri R, Varoquaux G, Thirion B, Eickhoff SB, Bzdok D.

Hum Brain Mapp. 2018 Feb;39(2):644-661. doi: 10.1002/hbm.23870. Epub 2017 Nov 3.

17.

FReM - Scalable and stable decoding with fast regularized ensemble of models.

Hoyos-Idrobo A, Varoquaux G, Schwartz Y, Thirion B.

Neuroimage. 2018 Oct 15;180(Pt A):160-172. doi: 10.1016/j.neuroimage.2017.10.005. Epub 2017 Oct 10.

PMID:
29030104
18.

Distinct alterations in Parkinson's medication-state and disease-state connectivity.

Ng B, Varoquaux G, Poline JB, Thirion B, Greicius MD, Poston KL.

Neuroimage Clin. 2017 Sep 6;16:575-585. doi: 10.1016/j.nicl.2017.09.004. eCollection 2017.

19.

Decoding fMRI activity in the time domain improves classification performance.

Loula J, Varoquaux G, Thirion B.

Neuroimage. 2018 Oct 15;180(Pt A):203-210. doi: 10.1016/j.neuroimage.2017.08.018. Epub 2017 Aug 9.

PMID:
28801250
20.

Joint prediction of multiple scores captures better individual traits from brain images.

Rahim M, Thirion B, Bzdok D, Buvat I, Varoquaux G.

Neuroimage. 2017 Sep;158:145-154. doi: 10.1016/j.neuroimage.2017.06.072. Epub 2017 Jul 1.

PMID:
28676298
21.

Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction.

Rahim M, Thirion B, Comtat C, Varoquaux G; Alzheimer’s Disease Neuroimaging Initiative.

IEEE J Sel Top Signal Process. 2016 Oct;10(7):120-1213. doi: 10.1109/JSTSP.2016.2600400. Epub 2016 Aug 15.

22.

Best practices in data analysis and sharing in neuroimaging using MRI.

Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT.

Nat Neurosci. 2017 Feb 23;20(3):299-303. doi: 10.1038/nn.4500. Review.

23.

Assessing and tuning brain decoders: Cross-validation, caveats, and guidelines.

Varoquaux G, Raamana PR, Engemann DA, Hoyos-Idrobo A, Schwartz Y, Thirion B.

Neuroimage. 2017 Jan 15;145(Pt B):166-179. doi: 10.1016/j.neuroimage.2016.10.038. Epub 2016 Oct 29. Review.

PMID:
27989847
24.

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example.

Abraham A, Milham MP, Di Martino A, Craddock RC, Samaras D, Thirion B, Varoquaux G.

Neuroimage. 2017 Feb 15;147:736-745. doi: 10.1016/j.neuroimage.2016.10.045. Epub 2016 Nov 16.

PMID:
27865923
25.

Seeing it all: Convolutional network layers map the function of the human visual system.

Eickenberg M, Gramfort A, Varoquaux G, Thirion B.

Neuroimage. 2017 May 15;152:184-194. doi: 10.1016/j.neuroimage.2016.10.001. Epub 2016 Oct 21.

PMID:
27777172
26.

Formal Models of the Network Co-occurrence Underlying Mental Operations.

Bzdok D, Varoquaux G, Grisel O, Eickenberg M, Poupon C, Thirion B.

PLoS Comput Biol. 2016 Jun 16;12(6):e1004994. doi: 10.1371/journal.pcbi.1004994. eCollection 2016 Jun.

27.

Connectivity-based parcellation: Critique and implications.

Eickhoff SB, Thirion B, Varoquaux G, Bzdok D.

Hum Brain Mapp. 2015 Dec;36(12):4771-92. doi: 10.1002/hbm.22933. Epub 2015 Sep 27. Review.

PMID:
26409749
28.

Transport on Riemannian Manifold for Connectivity-Based Brain Decoding.

Ng B, Varoquaux G, Poline JB, Greicius M, Thirion B.

IEEE Trans Med Imaging. 2016 Jan;35(1):208-16. doi: 10.1109/TMI.2015.2463723. Epub 2015 Aug 3.

PMID:
26259016
29.

Bootstrapped Permutation Test for Multiresponse Inference on Brain Behavior Associations.

Ng B, Poline JB, Thirion B, Greicius M; IMAGEN Consortium.

Inf Process Med Imaging. 2015;24:113-24.

30.

Exploring the Early Organization and Maturation of Linguistic Pathways in the Human Infant Brain.

Dubois J, Poupon C, Thirion B, Simonnet H, Kulikova S, Leroy F, Hertz-Pannier L, Dehaene-Lambertz G.

Cereb Cortex. 2016 May;26(5):2283-98. doi: 10.1093/cercor/bhv082. Epub 2015 Apr 29.

31.

Robust regression for large-scale neuroimaging studies.

Fritsch V, Da Mota B, Loth E, Varoquaux G, Banaschewski T, Barker GJ, Bokde AL, Brühl R, Butzek B, Conrod P, Flor H, Garavan H, Lemaitre H, Mann K, Nees F, Paus T, Schad DJ, Schümann G, Frouin V, Poline JB, Thirion B; IMAGEN consortium.

Neuroimage. 2015 May 1;111:431-41. doi: 10.1016/j.neuroimage.2015.02.048. Epub 2015 Feb 28.

PMID:
25731989
32.

Principal component regression predicts functional responses across individuals.

Thirion B, Varoquaux G, Grisel O, Poupon C, Pinel P.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):741-8.

PMID:
25485446
33.

Transport on Riemannian manifold for functional connectivity-based classification.

Ng B, Dressler M, Varoquaux G, Poline JB, Greicius M, Thirion B.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):405-12.

PMID:
25485405
34.

How machine learning is shaping cognitive neuroimaging.

Varoquaux G, Thirion B.

Gigascience. 2014 Nov 17;3:28. doi: 10.1186/2047-217X-3-28. eCollection 2014. Review.

35.

Identification of Mood-Relevant Brain Connections Using a Continuous, Subject-Driven Rumination Paradigm.

Milazzo AC, Ng B, Jiang H, Shirer W, Varoquaux G, Poline JB, Thirion B, Greicius MD.

Cereb Cortex. 2016 Mar;26(3):933-942. doi: 10.1093/cercor/bhu255. Epub 2014 Oct 19.

36.

Deriving a multi-subject functional-connectivity atlas to inform connectome estimation.

Phlypo R, Thirion B, Varoquaux G.

Med Image Comput Comput Assist Interv. 2014;17(Pt 3):185-92.

PMID:
25320798
37.

Data-driven HRF estimation for encoding and decoding models.

Pedregosa F, Eickenberg M, Ciuciu P, Thirion B, Gramfort A.

Neuroimage. 2015 Jan 1;104:209-20. doi: 10.1016/j.neuroimage.2014.09.060. Epub 2014 Oct 7.

PMID:
25304775
38.

Graph-based inter-subject pattern analysis of FMRI data.

Takerkart S, Auzias G, Thirion B, Ralaivola L.

PLoS One. 2014 Aug 15;9(8):e104586. doi: 10.1371/journal.pone.0104586. eCollection 2014.

39.

Which fMRI clustering gives good brain parcellations?

Thirion B, Varoquaux G, Dohmatob E, Poline JB.

Front Neurosci. 2014 Jul 1;8:167. doi: 10.3389/fnins.2014.00167. eCollection 2014.

40.

Interoperable atlases of the human brain.

Amunts K, Hawrylycz MJ, Van Essen DC, Van Horn JD, Harel N, Poline JB, De Martino F, Bjaalie JG, Dehaene-Lambertz G, Dehaene S, Valdes-Sosa P, Thirion B, Zilles K, Hill SL, Abrams MB, Tass PA, Vanduffel W, Evans AC, Eickhoff SB.

Neuroimage. 2014 Oct 1;99:525-32. doi: 10.1016/j.neuroimage.2014.06.010. Epub 2014 Jun 15. Review.

PMID:
24936682
41.

Machine learning patterns for neuroimaging-genetic studies in the cloud.

Da Mota B, Tudoran R, Costan A, Varoquaux G, Brasche G, Conrod P, Lemaitre H, Paus T, Rietschel M, Frouin V, Poline JB, Antoniu G, Thirion B; IMAGEN Consortium.

Front Neuroinform. 2014 Apr 8;8:31. doi: 10.3389/fninf.2014.00031. eCollection 2014.

42.

Probabilistic atlas and geometric variability estimation to drive tissue segmentation.

Xu H, Thirion B, Allassonnière S.

Stat Med. 2014 Sep 10;33(20):3576-99. doi: 10.1002/sim.6156. Epub 2014 Apr 2.

PMID:
24700632
43.

Machine learning for neuroimaging with scikit-learn.

Abraham A, Pedregosa F, Eickenberg M, Gervais P, Mueller A, Kossaifi J, Gramfort A, Thirion B, Varoquaux G.

Front Neuroinform. 2014 Feb 21;8:14. doi: 10.3389/fninf.2014.00014. eCollection 2014.

44.

Extracting brain regions from rest fMRI with total-variation constrained dictionary learning.

Abraham A, Dohmatob E, Thirion B, Samaras D, Varoquaux G.

Med Image Comput Comput Assist Interv. 2013;16(Pt 2):607-15.

PMID:
24579191
45.

Enhancing the reproducibility of group analysis with randomized brain parcellations.

Da Mota B, Fritsch V, Varoquaux G, Frouin V, Poline JB, Thirion B.

Med Image Comput Comput Assist Interv. 2013;16(Pt 2):591-8.

PMID:
24579189
46.

Implications of inconsistencies between fMRI and dMRI on multimodal connectivity estimation.

Ng B, Varoquaux G, Poline JB, Thirion B.

Med Image Comput Comput Assist Interv. 2013;16(Pt 3):652-9.

PMID:
24505817
47.

Bayesian estimation of probabilistic atlas for anatomically-informed functional MRI group analyses.

Xu H, Thirion B, Allassonnière S.

Med Image Comput Comput Assist Interv. 2013;16(Pt 3):592-9.

PMID:
24505810
48.

Randomized parcellation based inference.

Da Mota B, Fritsch V, Varoquaux G, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Conrod P, Gallinat J, Garavan H, Martinot JL, Nees F, Paus T, Pausova Z, Rietschel M, Smolka MN, Ströhle A, Frouin V, Poline JB, Thirion B; IMAGEN consortium.

Neuroimage. 2014 Apr 1;89:203-15. doi: 10.1016/j.neuroimage.2013.11.012. Epub 2013 Nov 19.

49.

A Framework for Inter-Subject Prediction of Functional Connectivity From Structural Networks.

Deligianni F, Varoquaux G, Thirion B, Sharp DJ, Ledig C, Leech R, Rueckert D.

IEEE Trans Med Imaging. 2013 Dec;32(12):2200-14. doi: 10.1109/TMI.2013.2276916. Epub 2013 Aug 6.

PMID:
23934663
50.

Schizophrenia as a network disease: disruption of emergent brain function in patients with auditory hallucinations.

Rish I, Cecchi G, Thyreau B, Thirion B, Plaze M, Paillere-Martinot ML, Martelli C, Martinot JL, Poline JB.

PLoS One. 2013;8(1):e50625. doi: 10.1371/journal.pone.0050625. Epub 2013 Jan 21.

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