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Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota.

Foutel-Rodier T, Thierry A, Koszul R, Marbouty M.

Methods Enzymol. 2018;612:183-195. doi: 10.1016/bs.mie.2018.08.001. Epub 2018 Sep 18.


New insights into structural features and optimal detection of circulating tumor DNA determined by single-strand DNA analysis.

Sanchez C, Snyder MW, Tanos R, Shendure J, Thierry AR.

NPJ Genom Med. 2018 Nov 23;3:31. doi: 10.1038/s41525-018-0069-0. eCollection 2018.


[Liquid biopsy: a possible approach for cancer screening].

Thierry AR, Tanos R.

Med Sci (Paris). 2018 Oct;34(10):824-832. doi: 10.1051/medsci/2018208. Epub 2018 Nov 19. French.


The Impact of Invariant NKT Cells in Sterile Inflammation: The Possible Contribution of the Alarmin/Cytokine IL-33.

Ferhat MH, Robin A, Barbier L, Thierry A, Gombert JM, Barbarin A, Herbelin A.

Front Immunol. 2018 Oct 15;9:2308. doi: 10.3389/fimmu.2018.02308. eCollection 2018.


Nuclear introns help unravel the diversification history of the Australo-Pacific Petroica robins.

Kearns AM, Malloy JF, Gobbert MK, Thierry A, Joseph L, Driskell AC, Omland KE.

Mol Phylogenet Evol. 2018 Oct 25;131:48-54. doi: 10.1016/j.ympev.2018.10.024. [Epub ahead of print]


A Cell Model Suitable for a High-Throughput Screening of Inhibitors of the Wnt/β-Catenin Pathway.

Grimaldi M, Boulahtouf A, Prévostel C, Thierry A, Balaguer P, Blache P.

Front Pharmacol. 2018 Oct 11;9:1160. doi: 10.3389/fphar.2018.01160. eCollection 2018.


Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin.

Moreau P, Cournac A, Palumbo GA, Marbouty M, Mortaza S, Thierry A, Cairo S, Lavigne M, Koszul R, Neuveut C.

Nat Commun. 2018 Oct 15;9(1):4268. doi: 10.1038/s41467-018-06739-4.


50 Gy Stereotactic Body Radiation Therapy to the Dominant Intra-Prostatic Nodule: Results from a Phase Ia/b Trial.

Herrera FG, Valerio M, Berthold D, Tawadros T, Meuwly JY, Vallet V, Baumgaertner P, Thierry AC, De Bari B, Jichlinski P, Kandalaft L, Coukos G, Harari A, Bourhis J.

Int J Radiat Oncol Biol Phys. 2018 Sep 26. pii: S0360-3016(18)33803-3. doi: 10.1016/j.ijrobp.2018.09.023. [Epub ahead of print]


Antifungal Activity of Lactic Acid Bacteria Combinations in Dairy Mimicking Models and Their Potential as Bioprotective Cultures in Pilot Scale Applications.

Leyva Salas M, Thierry A, Lemaître M, Garric G, Harel-Oger M, Chatel M, Lê S, Mounier J, Valence F, Coton E.

Front Microbiol. 2018 Aug 7;9:1787. doi: 10.3389/fmicb.2018.01787. eCollection 2018.


Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C.

Muller H, Scolari VF, Agier N, Piazza A, Thierry A, Mercy G, Descorps-Declere S, Lazar-Stefanita L, Espeli O, Llorente B, Fischer G, Mozziconacci J, Koszul R.

Mol Syst Biol. 2018 Jul 16;14(7):e8293. doi: 10.15252/msb.20188293.


No impact of disseminated intravascular coagulation in kidney donors on long-term kidney transplantation outcome: A multicenter propensity-matched study.

Garrouste C, Baudenon J, Gatault P, Pereira B, Etienne I, Thierry A, Szlavik N, Aniort J, Rabant M, Lambert C, Sayegh J, Oniszczuk J, Anglicheau D, Heng AE.

Am J Transplant. 2018 Jul 7. doi: 10.1111/ajt.15008. [Epub ahead of print]


The Candidate Blood Stage Malaria Vaccine P27A Induces a Robust Humoral Response in a Fast Track to the Field Phase I Trial in Exposed and Non Exposed Volunteers.

Steiner-Monard V, Kamaka K, Karoui O, Roethlisberger S, Audran R, Daubenberger C, Fayet-Mello A, Erdmann-Voisin A, Felger I, Geiger K, Govender L, Houard S, Huber E, Mayor C, Mkindi C, Portevin D, Rusch S, Schmidlin S, Tiendrebeogo RW, Theisen M, Thierry AC, Vallotton L, Corradin G, Leroy O, Abdulla S, Shekalaghe S, Genton B, Spertini F, Jongo SA.

Clin Infect Dis. 2018 Jun 26. doi: 10.1093/cid/ciy514. [Epub ahead of print]


Cytotoxicity assessment, inflammatory properties, and cellular uptake of Neutraplex lipid-based nanoparticles in THP-1 monocyte-derived macrophages.

Berger E, Breznan D, Stals S, Jasinghe VJ, Gonçalves D, Girard D, Faucher S, Vincent R, Thierry AR, Lavigne C.

Nanobiomedicine (Rij). 2017 Dec 21;4:1849543517746259. doi: 10.1177/1849543517746259. eCollection 2017 Jan-Dec.


A Step Closer to Cancer Screening by Blood Test.

Thierry AR.

Clin Chem. 2018 Oct;64(10):1420-1422. doi: 10.1373/clinchem.2018.287847. Epub 2018 Jun 14. No abstract available.


Mesencephalic dopamine neurons interfacing the shell of nucleus accumbens and the dorsolateral striatum in the rat.

Wouterlood FG, Engel A, Daal M, Houwen G, Meinderts A, Jordà Siquier T, Beliën JAM, van Dongen YC, Scheel-Krüger J, Thierry AM, Groenewegen HJ, Deniau JM.

J Neurosci Res. 2018 Sep;96(9):1518-1542. doi: 10.1002/jnr.24242. Epub 2018 Apr 25.


Inhibition of DDR1-BCR signalling by nilotinib as a new therapeutic strategy for metastatic colorectal cancer.

Jeitany M, Leroy C, Tosti P, Lafitte M, Le Guet J, Simon V, Bonenfant D, Robert B, Grillet F, Mollevi C, El Messaoudi S, Otandault A, Canterel-Thouennon L, Busson M, Thierry AR, Martineau P, Pannequin J, Roche S, Sirvent A.

EMBO Mol Med. 2018 Apr;10(4). pii: e7918. doi: 10.15252/emmm.201707918.


Endogenous IL-33 Contributes to Kidney Ischemia-Reperfusion Injury as an Alarmin.

Ferhat M, Robin A, Giraud S, Sena S, Goujon JM, Touchard G, Hauet T, Girard JP, Gombert JM, Herbelin A, Thierry A.

J Am Soc Nephrol. 2018 Apr;29(4):1272-1288. doi: 10.1681/ASN.2017060650. Epub 2018 Feb 7.


Predictive factors of spontaneous CMV DNAemia clearance in kidney transplantation.

Noble J, Gatault P, Sautenet B, Gaudy-Graffin C, Beby-Defaux A, Thierry A, Essig M, Halimi JM, Munteanu E, Alain S, Buchler M.

J Clin Virol. 2018 Feb - Mar;99-100:38-43. doi: 10.1016/j.jcv.2017.12.011. Epub 2017 Dec 29.


Recurrence of Renal Cell Cancer After Renal Transplantation in a Multicenter French Cohort.

Cognard N, Anglicheau D, Gatault P, Girerd S, Essig M, Hurault de Ligny B, Le Meur Y, Le Roy F, Garrouste C, Thierry A, Colosio C, Rivalan J, Sayegh J, Choukroun G, Moulin B, Caillard S.

Transplantation. 2018 May;102(5):860-867. doi: 10.1097/TP.0000000000002009.


IL-33 receptor ST2 deficiency attenuates renal ischaemia-reperfusion injury in euglycaemic, but not streptozotocin-induced hyperglycaemic mice.

Sehnine M, Ferhat M, Sena S, Gombert JM, Goujon JM, Thierry A, Touchard G, Hauet T, Herbelin A, Hadjadj S.

Diabetes Metab. 2018 Feb;44(1):55-60. doi: 10.1016/j.diabet.2017.06.008. Epub 2017 Sep 12.


Clinical utility of circulating DNA analysis for rapid detection of actionable mutations to select metastatic colorectal patients for anti-EGFR treatment.

Thierry AR, El Messaoudi S, Mollevi C, Raoul JL, Guimbaud R, Pezet D, Artru P, Assenat E, Borg C, Mathonnet M, De La Fouchardière C, Bouché O, Gavoille C, Fiess C, Auzemery B, Meddeb R, Lopez-Crapez E, Sanchez C, Pastor B, Ychou M.

Ann Oncol. 2017 Sep 1;28(9):2149-2159. doi: 10.1093/annonc/mdx330.


[From the perinatal period to adolescence: the three stages of coordination].

Thierry A, Laplace S, Gourbil A, Saint-André S.

Soins Psychiatr. 2017 Sep - Oct;38(312):16-19. doi: 10.1016/j.spsy.2017.06.006. French.


Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle.

Lazar-Stefanita L, Scolari VF, Mercy G, Muller H, Guérin TM, Thierry A, Mozziconacci J, Koszul R.

EMBO J. 2017 Sep 15;36(18):2684-2697. doi: 10.15252/embj.201797342. Epub 2017 Jul 20.


Strains of the Lactobacillus casei group show diverse abilities for the production of flavor compounds in 2 model systems.

Stefanovic E, Thierry A, Maillard MB, Bertuzzi A, Rea MC, Fitzgerald G, McAuliffe O, Kilcawley KN.

J Dairy Sci. 2017 Sep;100(9):6918-6929. doi: 10.3168/jds.2016-12408. Epub 2017 Jul 12.


Antifungal Microbial Agents for Food Biopreservation-A Review.

Leyva Salas M, Mounier J, Valence F, Coton M, Thierry A, Coton E.

Microorganisms. 2017 Jul 8;5(3). pii: E37. doi: 10.3390/microorganisms5030037. Review.


An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies.

Prémaud A, Filloux M, Gatault P, Thierry A, Büchler M, Munteanu E, Marquet P, Essig M, Rousseau A.

PLoS One. 2017 Jul 3;12(7):e0180236. doi: 10.1371/journal.pone.0180236. eCollection 2017.


Circulating DNA Demonstrates Convergent Evolution and Common Resistance Mechanisms during Treatment of Colorectal Cancer.

Thierry AR, Pastor B, Jiang ZQ, Katsiampoura AD, Parseghian C, Loree JM, Overman MJ, Sanchez C, Messaoudi SE, Ychou M, Kopetz S.

Clin Cancer Res. 2017 Aug 15;23(16):4578-4591. doi: 10.1158/1078-0432.CCR-17-0232. Epub 2017 Apr 11.


Specific expression of heme oxygenase-1 by myeloid cells modulates renal ischemia-reperfusion injury.

Rossi M, Thierry A, Delbauve S, Preyat N, Soares MP, Roumeguère T, Leo O, Flamand V, Le Moine A, Hougardy JM.

Sci Rep. 2017 Mar 15;7(1):197. doi: 10.1038/s41598-017-00220-w.


3D organization of synthetic and scrambled chromosomes.

Mercy G, Mozziconacci J, Scolari VF, Yang K, Zhao G, Thierry A, Luo Y, Mitchell LA, Shen M, Shen Y, Walker R, Zhang W, Wu Y, Xie ZX, Luo Z, Cai Y, Dai J, Yang H, Yuan YJ, Boeke JD, Bader JS, Muller H, Koszul R.

Science. 2017 Mar 10;355(6329). pii: eaaf4597. doi: 10.1126/science.aaf4597.


Dual Inhibition of EGFR and c-Src by Cetuximab and Dasatinib Combined with FOLFOX Chemotherapy in Patients with Metastatic Colorectal Cancer.

Parseghian CM, Parikh NU, Wu JY, Jiang ZQ, Henderson L, Tian F, Pastor B, Ychou M, Raghav K, Dasari A, Fogelman DR, Katsiampoura AD, Menter DG, Wolff RA, Eng C, Overman MJ, Thierry AR, Gallick GE, Kopetz S.

Clin Cancer Res. 2017 Aug 1;23(15):4146-4154. doi: 10.1158/1078-0432.CCR-16-3138. Epub 2017 Mar 9.


Assessing frost damages using dynamic models in walnut trees: exposure rather than vulnerability controls frost risks.

Guillaume C, Isabelle C, Marc B, Thierry A.

Plant Cell Environ. 2018 May;41(5):1008-1021. doi: 10.1111/pce.12935. Epub 2017 Apr 19.


Factors associated with carriage of carbapenem-non-susceptible Enterobacteriaceaein North-Eastern France and outcomes of infected patients.

Muggeo A, Guillard T, Barbe C, Thierry A, Bajolet O, Vernet-Garnier V, Limelette A, Brasme L, De Champs C; CARBAFREST Group.

J Antimicrob Chemother. 2017 May 1;72(5):1496-1501. doi: 10.1093/jac/dkw590.


Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage.

Aburjaile FF, Rohmer M, Parrinello H, Maillard MB, Beaucher E, Henry G, Nicolas A, Madec MN, Thierry A, Parayre S, Deutsch SM, Cocaign-Bousquet M, Miyoshi A, Azevedo V, Le Loir Y, Falentin H.

BMC Genomics. 2016 Dec 8;17(1):1007.


Functional diversity within the Penicillium roqueforti species.

Gillot G, Jany JL, Poirier E, Maillard MB, Debaets S, Thierry A, Coton E, Coton M.

Int J Food Microbiol. 2017 Jan 16;241:141-150. doi: 10.1016/j.ijfoodmicro.2016.10.001. Epub 2016 Oct 4.


Academia Meets Industry.

Schäfer C, Paprotka T, Heitzer E, Eccleston M, Noe J, Holdenrieder S, Diehl F, Thierry A.

Adv Exp Med Biol. 2016;924:201-215.


Examining Mammography Use by Breast Cancer Risk, Race, Nativity, and Socioeconomic Status.

Elewonibi BR, Thierry AD, Miranda PY.

J Immigr Minor Health. 2018 Feb;20(1):59-65. doi: 10.1007/s10903-016-0502-3.


Predictive Modeling of Tacrolimus Dose Requirement Based on High-Throughput Genetic Screening.

Damon C, Luck M, Toullec L, Etienne I, Buchler M, Hurault de Ligny B, Choukroun G, Thierry A, Vigneau C, Moulin B, Heng AE, Subra JF, Legendre C, Monnot A, Yartseva A, Bateson M, Laurent-Puig P, Anglicheau D, Beaune P, Loriot MA, Thervet E, Pallet N.

Am J Transplant. 2017 Apr;17(4):1008-1019. doi: 10.1111/ajt.14040. Epub 2016 Oct 7.


Origins, structures, and functions of circulating DNA in oncology.

Thierry AR, El Messaoudi S, Gahan PB, Anker P, Stroun M.

Cancer Metastasis Rev. 2016 Sep;35(3):347-76. doi: 10.1007/s10555-016-9629-x. Review.


Mother's Emotional and Posttraumatic Reactions after a Preterm Birth: The Mother-Infant Interaction Is at Stake 12 Months after Birth.

Petit AC, Eutrope J, Thierry A, Bednarek N, Aupetit L, Saad S, Vulliez L, Sibertin-Blanc D, Nezelof S, Rolland AC.

PLoS One. 2016 Mar 29;11(3):e0151091. doi: 10.1371/journal.pone.0151091. eCollection 2016.


Long-Term Clinical Impact of Adaptation of Initial Tacrolimus Dosing to CYP3A5 Genotype.

Pallet N, Etienne I, Buchler M, Bailly E, Hurault de Ligny B, Choukroun G, Colosio C, Thierry A, Vigneau C, Moulin B, Le Meur Y, Heng AE, Legendre C, Beaune P, Loriot MA, Thervet E.

Am J Transplant. 2016 Sep;16(9):2670-5. doi: 10.1111/ajt.13788. Epub 2016 Apr 8.


Diagnostic Accuracy of Emergency Physician-Performed Ultrasound for Acute Appendicitis in a Remote Location.

Topin F, Thierry AL, Catrevaux O, Barnoux T, Menguy P, Bertani A, Massoure PL, Geffroy Y, Tourtier JP, Bougère J.

J Emerg Med. 2016 Jun;50(6):859-67. doi: 10.1016/j.jemermed.2015.06.085. Epub 2016 Mar 10.


Prognostic value of kidney biopsy in myeloma cast nephropathy: a retrospective study of 70 patients.

Ecotière L, Thierry A, Debiais-Delpech C, Chevret S, Javaugue V, Desport E, Belmouaz S, Quellard N, Kaaki S, Michel Goujon J, Fermand JP, Touchard G, Bridoux F.

Nephrol Dial Transplant. 2016 May;31(5):850. doi: 10.1093/ndt/gfw056. Epub 2016 Mar 10. No abstract available.


Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast.

Thierry A, Khanna V, Dujon B.

G3 (Bethesda). 2016 May 3;6(5):1201-15. doi: 10.1534/g3.115.024547.


The influence of vegetation and soil characteristics on active-layer thickness of permafrost soils in boreal forest.

Fisher JP, Estop-Aragonés C, Thierry A, Charman DJ, Wolfe SA, Hartley IP, Murton JB, Williams M, Phoenix GK.

Glob Chang Biol. 2016 Sep;22(9):3127-40. doi: 10.1111/gcb.13248. Epub 2016 Jun 9.


Circulating DNA as a Strong Multimarker Prognostic Tool for Metastatic Colorectal Cancer Patient Management Care.

El Messaoudi S, Mouliere F, Du Manoir S, Bascoul-Mollevi C, Gillet B, Nouaille M, Fiess C, Crapez E, Bibeau F, Theillet C, Mazard T, Pezet D, Mathonnet M, Ychou M, Thierry AR.

Clin Cancer Res. 2016 Jun 15;22(12):3067-77. doi: 10.1158/1078-0432.CCR-15-0297. Epub 2016 Feb 4.


A Targeted Q-PCR-Based Method for Point Mutation Testing by Analyzing Circulating DNA for Cancer Management Care.

Thierry AR.

Methods Mol Biol. 2016;1392:1-16. doi: 10.1007/978-1-4939-3360-0_1.


A Lack of Significant Effect of POR*28 Allelic Variant on Tacrolimus Exposure in Kidney Transplant Recipients.

Jannot AS, Vuillemin X, Etienne I, Buchler M, Hurault de Ligny B, Choukroun G, Colosio C, Thierry A, Vigneau C, Moulin B, Rerolle JP, Heng AE, Subra JF, Legendre C, Beaune P, Loriot MA, Thervet E, Pallet N.

Ther Drug Monit. 2016 Apr;38(2):223-9. doi: 10.1097/FTD.0000000000000267.


Editorial: Exploring Bacterial Colonies in Solid Foods or Model Foods Using Non-Destructive Techniques.

Jeanson S, Thierry A.

Front Microbiol. 2015 Dec 22;6:1440. doi: 10.3389/fmicb.2015.01440. eCollection 2015. No abstract available.


Minimization of maintenance immunosuppressive therapy after renal transplantation comparing cyclosporine A/azathioprine or cyclosporine A/mycophenolate mofetil bitherapy to cyclosporine A monotherapy: a 10-year postrandomization follow-up study.

Thierry A, Le Meur Y, Ecotière L, Abou-Ayache R, Etienne I, Laurent C, Vuiblet V, Colosio C, Bouvier N, Aldigier JC, Rerolle JP, Javaugue V, Gand E, Bridoux F, Essig M, Hurault de Ligny B, Touchard G.

Transpl Int. 2016 Jan;29(1):23-33. doi: 10.1111/tri.12627. Erratum in: Transpl Int. 2016 Jul;29(7):833. Lemeur, Yann [corrected to Le Meur, Yannick].


Safety and immunogenicity of a chimpanzee adenovirus-vectored Ebola vaccine in healthy adults: a randomised, double-blind, placebo-controlled, dose-finding, phase 1/2a study.

De Santis O, Audran R, Pothin E, Warpelin-Decrausaz L, Vallotton L, Wuerzner G, Cochet C, Estoppey D, Steiner-Monard V, Lonchampt S, Thierry AC, Mayor C, Bailer RT, Mbaya OT, Zhou Y, Ploquin A, Sullivan NJ, Graham BS, Roman F, De Ryck I, Ballou WR, Kieny MP, Moorthy V, Spertini F, Genton B.

Lancet Infect Dis. 2016 Mar;16(3):311-20. doi: 10.1016/S1473-3099(15)00486-7. Epub 2015 Dec 23.

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