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Items: 14

1.

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.

Endara L, Thessen AE, Cole HA, Walls R, Gkoutos G, Cao Y, Chong SS, Cui H.

Biodivers Data J. 2018 Nov 28;(6):e29232. doi: 10.3897/BDJ.6.e29232. eCollection 2018.

PMID:
30532623
2.

A new paradigm for the scientific enterprise: nurturing the ecosystem.

Lancaster AK, Thessen AE, Virapongse A.

F1000Res. 2018 Jun 20;7:803. doi: 10.12688/f1000research.15078.1. eCollection 2018.

3.

Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico.

Thessen AE, North EW.

Mar Pollut Bull. 2017 Sep 15;122(1-2):77-84. doi: 10.1016/j.marpolbul.2017.06.004. Epub 2017 Jun 20.

PMID:
28645762
4.

Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques.

Gandy LM, Gumm J, Fertig B, Thessen A, Kennish MJ, Chavan S, Marchionni L, Xia X, Shankrit S, Fertig EJ.

PLoS One. 2017 Apr 24;12(4):e0175860. doi: 10.1371/journal.pone.0175860. eCollection 2017.

5.

Challenges with using names to link digital biodiversity information.

Patterson D, Mozzherin D, Shorthouse DP, Thessen A.

Biodivers Data J. 2016 May 25;(4):e8080. doi: 10.3897/BDJ.4.e8080. eCollection 2016. No abstract available.

6.

Emerging semantics to link phenotype and environment.

Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, Walls RL, White JW, Zhang G, Deans AR, Huala E, Lewis SE, Mabee PM.

PeerJ. 2015 Dec 14;3:e1470. doi: 10.7717/peerj.1470. eCollection 2015.

7.

Finding our way through phenotypes.

Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P.

PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan.

8.

A statistical assessment of population trends for data deficient Mexican amphibians.

Quintero E, Thessen AE, Arias-Caballero P, Ayala-Orozco B.

PeerJ. 2014 Dec 16;2:e703. doi: 10.7717/peerj.703. eCollection 2014.

9.

Knowledge extraction and semantic annotation of text from the encyclopedia of life.

Thessen AE, Parr CS.

PLoS One. 2014 Mar 3;9(3):e89550. doi: 10.1371/journal.pone.0089550. eCollection 2014.

10.

The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example.

Thessen AE, Patterson DJ, Murray SA.

PLoS One. 2012;7(8):e44015. doi: 10.1371/journal.pone.0044015. Epub 2012 Aug 30.

11.

Transcriptomics and microbial eukaryote diversity: a way forward.

Murray SA, Patterson DJ, Thessen AE.

Trends Ecol Evol. 2012 Dec;27(12):651-2; author reply 652-3. doi: 10.1016/j.tree.2012.08.011. Epub 2012 Aug 31. No abstract available.

PMID:
22940223
12.

Applications of natural language processing in biodiversity science.

Thessen AE, Cui H, Mozzherin D.

Adv Bioinformatics. 2012;2012:391574. doi: 10.1155/2012/391574. Epub 2012 May 22.

13.

Data issues in the life sciences.

Thessen AE, Patterson DJ.

Zookeys. 2011;(150):15-51. doi: 10.3897/zookeys.150.1766. Epub 2011 Nov 28.

14.

Meeting Report: BioSharing at ISMB 2010.

Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, Bramlett B, Gregurick S, Lapp H, Orchard S, Rocca-Serra P, Ruttenberg A, Shah N, Taylor C, Thessen A.

Stand Genomic Sci. 2010 Dec 4;3(3):254-8. doi: 10.4056/sigs/1403501.

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