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Items: 1 to 50 of 61

1.

Guanidine Riboswitch-Regulated Efflux Transporters Protect Bacteria against Ionic Liquid Toxicity.

Higgins DA, Gladden JM, Kimbrel JA, Simmons BA, Singer SW, Thelen MP.

J Bacteriol. 2019 Jun 10;201(13). pii: e00069-19. doi: 10.1128/JB.00069-19. Print 2019 Jul 1.

2.

Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control.

Ruegg TL, Pereira JH, Chen JC, DeGiovanni A, Novichkov P, Mutalik VK, Tomaleri GP, Singer SW, Hillson NJ, Simmons BA, Adams PD, Thelen MP.

Nat Commun. 2018 Oct 30;9(1):4596. doi: 10.1038/s41467-018-07111-2.

3.

Jungle Express is a versatile repressor system for tight transcriptional control.

Ruegg TL, Pereira JH, Chen JC, DeGiovanni A, Novichkov P, Mutalik VK, Tomaleri GP, Singer SW, Hillson NJ, Simmons BA, Adams PD, Thelen MP.

Nat Commun. 2018 Sep 6;9(1):3617. doi: 10.1038/s41467-018-05857-3. Erratum in: Nat Commun. 2018 Oct 30;9(1):4596.

4.

Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast.

Higgins DA, Young MKM, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, Thelen MP, Sato TK.

Genetics. 2018 Sep;210(1):219-234. doi: 10.1534/genetics.118.301161. Epub 2018 Jul 25.

5.

Author Correction: Neuronal activity regulates DROSHA via autophagy in spinal muscular atrophy.

Gonçalves IDCG, Brecht J, Thelen MP, Rehorst WA, Peters M, Lee HJ, Motameny S, Torres-Benito L, Ebrahimi-Fakhari D, Kononenko NL, Altmüller J, Vilchez D, Sahin M, Wirth B, Kye MJ.

Sci Rep. 2018 Jul 3;8(1):10294. doi: 10.1038/s41598-018-28202-6.

6.

Neuronal activity regulates DROSHA via autophagy in spinal muscular atrophy.

Gonçalves IDCG, Brecht J, Thelen MP, Rehorst WA, Peters M, Lee HJ, Motameny S, Torres-Benito L, Ebrahimi-Fakhari D, Kononenko NL, Altmüller J, Vilchez D, Sahin M, Wirth B, Kye MJ.

Sci Rep. 2018 May 21;8(1):7907. doi: 10.1038/s41598-018-26347-y. Erratum in: Sci Rep. 2018 Jul 3;8(1):10294.

7.

Ionic liquid-tolerant microorganisms and microbial communities for lignocellulose conversion to bioproducts.

Yu C, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS.

Appl Microbiol Biotechnol. 2016 Dec;100(24):10237-10249. Epub 2016 Nov 12. Review.

8.

Microbial mercury methylation in Antarctic sea ice.

Gionfriddo CM, Tate MT, Wick RR, Schultz MB, Zemla A, Thelen MP, Schofield R, Krabbenhoft DP, Holt KE, Moreau JW.

Nat Microbiol. 2016 Aug 1;1(10):16127. doi: 10.1038/nmicrobiol.2016.127.

PMID:
27670112
9.

Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm.

Stuart RK, Mayali X, Boaro AA, Zemla A, Everroad RC, Nilson D, Weber PK, Lipton M, Bebout BM, Pett-Ridge J, Thelen MP.

MBio. 2016 Jun 28;7(3). pii: e00650-16. doi: 10.1128/mBio.00650-16.

10.

Enrichment of microbial communities tolerant to the ionic liquids tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate.

Pace S, Ceballos SJ, Harrold D, Stannard W, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS.

Appl Microbiol Biotechnol. 2016 Jun;100(12):5639-52. doi: 10.1007/s00253-016-7525-5. Epub 2016 Apr 22.

11.

Cyanobacterial reuse of extracellular organic carbon in microbial mats.

Stuart RK, Mayali X, Lee JZ, Craig Everroad R, Hwang M, Bebout BM, Weber PK, Pett-Ridge J, Thelen MP.

ISME J. 2016 May;10(5):1240-51. doi: 10.1038/ismej.2015.180. Epub 2015 Oct 23.

12.

Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw.

Simmons CW, Reddy AP, D'haeseleer P, Khudyakov J, Billis K, Pati A, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS.

Biotechnol Biofuels. 2014 Dec 31;7(1):495. doi: 10.1186/s13068-014-0180-0. eCollection 2014.

13.

Development of a native Escherichia coli induction system for ionic liquid tolerance.

Frederix M, Hütter K, Leu J, Batth TS, Turner WJ, Rüegg TL, Blanch HW, Simmons BA, Adams PD, Keasling JD, Thelen MP, Dunlop MJ, Petzold CJ, Mukhopadhyay A.

PLoS One. 2014 Jul 1;9(7):e101115. doi: 10.1371/journal.pone.0101115. eCollection 2014.

14.

Photoenhanced electrochemical interaction between Shewanella and a hematite nanowire photoanode.

Qian F, Wang H, Ling Y, Wang G, Thelen MP, Li Y.

Nano Lett. 2014 Jun 11;14(6):3688-93. doi: 10.1021/nl501664n. Epub 2014 Jun 2.

PMID:
24875432
15.

An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production.

Ruegg TL, Kim EM, Simmons BA, Keasling JD, Singer SW, Lee TS, Thelen MP.

Nat Commun. 2014 Mar 26;5:3490. doi: 10.1038/ncomms4490.

PMID:
24667370
16.

Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses.

Reddy AP, Simmons CW, D'haeseleer P, Khudyakov J, Burd H, Hadi M, Simmons BA, Singer SW, Thelen MP, Vandergheynst JS.

PLoS One. 2013 Oct 25;8(10):e77985. doi: 10.1371/journal.pone.0077985. eCollection 2013.

17.

Lignin depletion enhances the digestibility of cellulose in cultured xylem cells.

Lacayo CI, Hwang MS, Ding SY, Thelen MP.

PLoS One. 2013 Jul 18;8(7):e68266. doi: 10.1371/journal.pone.0068266. Print 2013.

18.

Characterization of axial and proximal histidine mutations of the decaheme cytochrome MtrA from Shewanella sp. strain ANA-3 and implications for the electron transport system.

Reyes C, Qian F, Zhang A, Bondarev S, Welch A, Thelen MP, Saltikov CW.

J Bacteriol. 2012 Nov;194(21):5840-7. doi: 10.1128/JB.00890-12. Epub 2012 Aug 24.

19.

Enhanced cellulose degradation using cellulase-nanosphere complexes.

Blanchette C, Lacayo CI, Fischer NO, Hwang M, Thelen MP.

PLoS One. 2012;7(8):e42116. doi: 10.1371/journal.pone.0042116. Epub 2012 Aug 1.

20.

Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

Chen Z, Friedland GD, Pereira JH, Reveco SA, Chan R, Park JI, Thelen MP, Adams PD, Arkin AP, Keasling JD, Blanch HW, Simmons BA, Sale KL, Chivian D, Chhabra SR.

J Biol Chem. 2012 Jul 20;287(30):25335-43. doi: 10.1074/jbc.M112.362640. Epub 2012 May 29.

21.

Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.

Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):E2173-82. doi: 10.1073/pnas.1112750109. Epub 2012 May 14.

22.

Metal affinity enrichment increases the range and depth of proteome identification for extracellular microbial proteins.

Wheeler KE, Erickson BK, Mueller R, Singer SW, Verberkmoes NC, Hwang M, Thelen MP, Hettich RL.

J Proteome Res. 2012 Feb 3;11(2):861-70. doi: 10.1021/pr200693u. Epub 2012 Jan 25.

PMID:
22191549
23.

A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes.

Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, Justice N, Banfield JF.

PLoS Comput Biol. 2011 Oct;7(10):e1002230. doi: 10.1371/journal.pcbi.1002230. Epub 2011 Oct 20.

24.

ATM controls meiotic double-strand-break formation.

Lange J, Pan J, Cole F, Thelen MP, Jasin M, Keeney S.

Nature. 2011 Oct 16;479(7372):237-40. doi: 10.1038/nature10508.

25.

Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community.

Jiao Y, D'haeseleer P, Dill BD, Shah M, Verberkmoes NC, Hettich RL, Banfield JF, Thelen MP.

Appl Environ Microbiol. 2011 Aug;77(15):5230-7. doi: 10.1128/AEM.03005-10. Epub 2011 Jun 17.

26.

A microfluidic microbial fuel cell fabricated by soft lithography.

Qian F, He Z, Thelen MP, Li Y.

Bioresour Technol. 2011 May;102(10):5836-40. doi: 10.1016/j.biortech.2011.02.095. Epub 2011 Mar 21.

PMID:
21421307
27.

Imaging cell wall architecture in single Zinnia elegans tracheary elements.

Lacayo CI, Malkin AJ, Holman HY, Chen L, Ding SY, Hwang MS, Thelen MP.

Plant Physiol. 2010 Sep;154(1):121-33. doi: 10.1104/pp.110.155242. Epub 2010 Jun 30.

28.

Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities.

Singer SW, Erickson BK, VerBerkmoes NC, Hwang M, Shah MB, Hettich RL, Banfield JF, Thelen MP.

ISME J. 2010 Nov;4(11):1398-409. doi: 10.1038/ismej.2010.64. Epub 2010 May 20.

PMID:
20485387
29.

Characterization of extracellular polymeric substances from acidophilic microbial biofilms.

Jiao Y, Cody GD, Harding AK, Wilmes P, Schrenk M, Wheeler KE, Banfield JF, Thelen MP.

Appl Environ Microbiol. 2010 May;76(9):2916-22. doi: 10.1128/AEM.02289-09. Epub 2010 Mar 12.

30.

Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community.

Erickson BK, Mueller RS, VerBerkmoes NC, Shah M, Singer SW, Thelen MP, Banfield JF, Hettich RL.

J Proteome Res. 2010 May 7;9(5):2148-59. doi: 10.1021/pr900877a.

PMID:
20218729
31.

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.

Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, Hettich RL, Banfield JF.

Appl Environ Microbiol. 2009 Jul;75(13):4599-615. doi: 10.1128/AEM.02943-08. Epub 2009 May 8.

32.

Natural acidophilic biofilm communities reflect distinct organismal and functional organization.

Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF.

ISME J. 2009 Feb;3(2):266-70. doi: 10.1038/ismej.2008.90. Epub 2008 Oct 9.

PMID:
18843299
33.

Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation.

Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF.

PLoS Biol. 2008 Jul 22;6(7):e177. doi: 10.1371/journal.pbio.0060177.

34.

Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community.

Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP.

Appl Environ Microbiol. 2008 Jul;74(14):4454-62. doi: 10.1128/AEM.02799-07. Epub 2008 May 9.

35.

Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community.

Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP.

ISME J. 2008 May;2(5):542-50. doi: 10.1038/ismej.2008.17. Epub 2008 Feb 28.

PMID:
18463612
36.

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.

Nature. 2007 Mar 29;446(7135):537-41. Epub 2007 Mar 7.

PMID:
17344860
37.

Proteogenomic approaches for the molecular characterization of natural microbial communities.

Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP.

OMICS. 2005 Winter;9(4):301-33.

PMID:
16402891
38.

Specificity of protein interactions mediated by BRCT domains of the XRCC1 DNA repair protein.

Beernink PT, Hwang M, Ramirez M, Murphy MB, Doyle SA, Thelen MP.

J Biol Chem. 2005 Aug 26;280(34):30206-13. Epub 2005 Jun 28.

39.

Community proteomics of a natural microbial biofilm.

Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC 2nd, Shah M, Hettich RL, Banfield JF.

Science. 2005 Jun 24;308(5730):1915-20. Epub 2005 May 5.

40.

Molecular modeling-based analysis of interactions in the RFC-dependent clamp-loading process.

Venclovas C, Colvin ME, Thelen MP.

Protein Sci. 2002 Oct;11(10):2403-16.

41.

Involvement of Rad51C in two distinct protein complexes of Rad51 paralogs in human cells.

Liu N, Schild D, Thelen MP, Thompson LH.

Nucleic Acids Res. 2002 Feb 15;30(4):1009-15.

42.

Contribution of XPF functional domains to the 5' and 3' incisions produced at the site of a psoralen interstrand cross-link.

Kumaresan KR, Hwang M, Thelen MP, Lambert MW.

Biochemistry. 2002 Jan 22;41(3):890-6.

PMID:
11790111
43.

Human XPA and XRCC1 DNA repair proteins expressed in yeast, Saccharomyces cerevisiae.

Pushnova EA, Ostanin K, Thelen MP.

Mol Genet Metab. 2001 Nov;74(3):380-4.

PMID:
11708869
44.

Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain.

Krishnan VV, Thornton KH, Thelen MP, Cosman M.

Biochemistry. 2001 Nov 6;40(44):13158-66.

PMID:
11683624
45.

Expression, purification, and biophysical characterization of the BRCT domain of human DNA ligase IIIalpha.

Thornton KH, Krishnan VV, West MG, Popham J, Ramirez M, Thelen MP, Cosman M.

Protein Expr Purif. 2001 Apr;21(3):401-11.

PMID:
11281714
46.

Structure-based predictions of Rad1, Rad9, Hus1 and Rad17 participation in sliding clamp and clamp-loading complexes.

Venclovas C, Thelen MP.

Nucleic Acids Res. 2000 Jul 1;28(13):2481-93. doi: 10.1093/nar/28.13.2481.

47.

Characterization of the mouse Xpf DNA repair gene and differential expression during spermatogenesis.

Shannon M, Lamerdin JE, Richardson L, McCutchen-Maloney SL, Hwang MH, Handel MA, Stubbs L, Thelen MP.

Genomics. 1999 Dec 15;62(3):427-35.

PMID:
10644440
48.

Differential gene expression of mammalian SPO11/TOP6A homologs during meiosis.

Shannon M, Richardson L, Christian A, Handel MA, Thelen MP.

FEBS Lett. 1999 Dec 3;462(3):329-34.

49.

Purification, characterization, and crystallization of the distal BRCT domain of the human XRCC1 DNA repair protein.

Thornton K, Forstner M, Shen MR, West MG, Rupp B, Thelen MP.

Protein Expr Purif. 1999 Jul;16(2):236-42.

PMID:
10419820
50.

Domain mapping of the DNA binding, endonuclease, and ERCC1 binding properties of the human DNA repair protein XPF.

McCutchen-Maloney SL, Giannecchini CA, Hwang MH, Thelen MP.

Biochemistry. 1999 Jul 20;38(29):9417-25.

PMID:
10413517

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