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Items: 1 to 50 of 108

1.

Variation in Seed Allergen Content From Three Varieties of Soybean Cultivated in Nine Different Locations in Iowa, Illinois, and Indiana.

McClain S, Stevenson SE, Brownie C, Herouet-Guicheney C, Herman RA, Ladics GS, Privalle L, Ward JM, Doerrer N, Thelen JJ.

Front Plant Sci. 2018 Jul 23;9:1025. doi: 10.3389/fpls.2018.01025. eCollection 2018.

2.

Absolute Quantitation of Plant Proteins.

Ahsan N, Wilson RS, Thelen JJ.

Curr Protoc Plant Biol. 2018 Mar;3(1):1-13. doi: 10.1002/cppb.20064.

PMID:
30040253
3.

Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential H+-Pump Abundance and Activity.

Passamani LZ, Bertolazi AA, Ramos AC, Santa-Catarina C, Thelen JJ, Silveira V.

J Proteome Res. 2018 Aug 3;17(8):2767-2779. doi: 10.1021/acs.jproteome.8b00213. Epub 2018 Jul 5.

PMID:
29931982
4.

MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants.

Zhang N, Rao RSP, Salvato F, Havelund JF, Møller IM, Thelen JJ, Xu D.

Front Plant Sci. 2018 May 23;9:634. doi: 10.3389/fpls.2018.00634. eCollection 2018.

5.

In Vivo Quantitative Monitoring of Subunit Stoichiometry for Metabolic Complexes.

Wilson RS, Thelen JJ.

J Proteome Res. 2018 May 4;17(5):1773-1783. doi: 10.1021/acs.jproteome.7b00756. Epub 2018 Apr 2.

PMID:
29582652
6.

Activation of the LRR Receptor-Like Kinase PSY1R Requires Transphosphorylation of Residues in the Activation Loop.

Oehlenschlæger CB, Gersby LBA, Ahsan N, Pedersen JT, Kristensen A, Solakova TV, Thelen JJ, Fuglsang AT.

Front Plant Sci. 2017 Nov 27;8:2005. doi: 10.3389/fpls.2017.02005. eCollection 2017.

7.

The Bacteroid Periplasm in Soybean Nodules Is an Interkingdom Symbiotic Space.

Strodtman KN, Stevenson SE, Waters JK, Mawhinney TP, Thelen JJ, Polacco JC, Emerich DW.

Mol Plant Microbe Interact. 2017 Dec;30(12):997-1008. doi: 10.1094/MPMI-12-16-0264-R. Epub 2017 Oct 13.

PMID:
29028412
8.

Luxurious Nitrogen Fertilization of Two Sugar Cane Genotypes Contrasting for Lignin Composition Causes Changes in the Stem Proteome Related to Carbon, Nitrogen, and Oxidant Metabolism but Does Not Alter Lignin Content.

Salvato F, Wilson R, Portilla Llerena JP, Kiyota E, Lima Reis K, Boaretto LF, Balbuena TS, Azevedo RA, Thelen JJ, Mazzafera P.

J Proteome Res. 2017 Oct 6;16(10):3688-3703. doi: 10.1021/acs.jproteome.7b00397. Epub 2017 Sep 7.

PMID:
28836437
9.

Controlled modification of biomolecules by ultrashort laser pulses in polar liquids.

Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ.

Sci Rep. 2017 Jul 17;7(1):5550. doi: 10.1038/s41598-017-05761-8.

10.

Comparative proteomic analysis provides insight into the biological role of protein phosphatase inhibitor-2 from Arabidopsis.

Ahsan N, Chen M, Salvato F, Wilson RS, Shyama Prasad Rao R, Thelen JJ.

J Proteomics. 2017 Aug 8;165:51-60. doi: 10.1016/j.jprot.2017.06.006. Epub 2017 Jun 10.

PMID:
28610761
11.

Editorial.

Møller IM, Thelen JJ.

Mitochondrion. 2017 Mar;33:1. doi: 10.1016/j.mito.2016.12.005. Epub 2016 Dec 24. No abstract available.

PMID:
28025171
12.

Two SERK Receptor-Like Kinases Interact with EMS1 to Control Anther Cell Fate Determination.

Li Z, Wang Y, Huang J, Ahsan N, Biener G, Paprocki J, Thelen JJ, Raicu V, Zhao D.

Plant Physiol. 2017 Jan;173(1):326-337. doi: 10.1104/pp.16.01219. Epub 2016 Dec 5.

13.

Sunflower HaGPAT9-1 is the predominant GPAT during seed development.

Payá-Milans M, Aznar-Moreno JA, Balbuena TS, Haslam RP, Gidda SK, Pérez-Hormaeche J, Mullen RT, Thelen JJ, Napier JA, Salas JJ, Garcés R, Martínez-Force E, Venegas-Calerón M.

Plant Sci. 2016 Nov;252:42-52. doi: 10.1016/j.plantsci.2016.07.002. Epub 2016 Jul 9.

PMID:
27717477
14.

A Family of Negative Regulators Targets the Committed Step of de Novo Fatty Acid Biosynthesis.

Salie MJ, Zhang N, Lancikova V, Xu D, Thelen JJ.

Plant Cell. 2016 Sep;28(9):2312-2325. doi: 10.1105/tpc.16.00317. Epub 2016 Aug 24.

15.

The proteome of higher plant mitochondria.

Rao RS, Salvato F, Thal B, Eubel H, Thelen JJ, Møller IM.

Mitochondrion. 2017 Mar;33:22-37. doi: 10.1016/j.mito.2016.07.002. Epub 2016 Jul 9.

PMID:
27405097
16.

Regulation of the Regulators: Post-Translational Modifications, Subcellular, and Spatiotemporal Distribution of Plant 14-3-3 Proteins.

Wilson RS, Swatek KN, Thelen JJ.

Front Plant Sci. 2016 May 9;7:611. doi: 10.3389/fpls.2016.00611. eCollection 2016. Review.

17.

The Raf-like Kinase ILK1 and the High Affinity K+ Transporter HAK5 Are Required for Innate Immunity and Abiotic Stress Response.

Brauer EK, Ahsan N, Dale R, Kato N, Coluccio AE, Piñeros MA, Kochian LV, Thelen JJ, Popescu SC.

Plant Physiol. 2016 Jun;171(2):1470-84. doi: 10.1104/pp.16.00035. Epub 2016 May 2.

18.

Regulation and structure of the heteromeric acetyl-CoA carboxylase.

Salie MJ, Thelen JJ.

Biochim Biophys Acta. 2016 Sep;1861(9 Pt B):1207-1213. doi: 10.1016/j.bbalip.2016.04.004. Epub 2016 Apr 16. Review.

PMID:
27091637
19.

Acyl-lipid desaturase 1 primes cold acclimation response in Arabidopsis.

Chen M, Thelen JJ.

Physiol Plant. 2016 Sep;158(1):11-22. doi: 10.1111/ppl.12448. Epub 2016 Jun 16.

PMID:
27062193
20.

A laser ablation ICP-MS based method for multiplexed immunoblot analysis: applications to manganese-dependent protein dynamics of photosystem II in barley (Hordeum vulgare L.).

de Bang TC, Petersen J, Pedas PR, Rogowska-Wrzesinska A, Jensen ON, Schjoerring JK, Jensen PE, Thelen JJ, Husted S.

Plant J. 2015 Aug;83(3):555-65. doi: 10.1111/tpj.12906.

21.

Comparative proteomic analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale and different monocot species.

Salvato F, Balbuena TS, Nelson W, Rao RS, He R, Soderlund CA, Gang DR, Thelen JJ.

J Proteome Res. 2015 Apr 3;14(4):1779-91. doi: 10.1021/pr501157w. Epub 2015 Mar 5.

PMID:
25716083
22.

Development of an isoform-specific tandem mass spectrometry assay for absolute quantitation of maize lipid transfer proteins.

Stevenson SE, McClain S, Thelen JJ.

J Agric Food Chem. 2015 Jan 28;63(3):821-8. doi: 10.1021/jf504708u. Epub 2015 Jan 15.

PMID:
25540820
23.

Convergent signaling pathways--interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation.

Rao RS, Møller IM, Thelen JJ, Miernyk JA.

Cell Stress Chaperones. 2015 Jan;20(1):15-21. doi: 10.1007/s12192-014-0544-1. Epub 2014 Sep 20.

24.

A modified data normalization method for GC-MS-based metabolomics to minimize batch variation.

Chen M, Rao RS, Zhang Y, Zhong CX, Thelen JJ.

Springerplus. 2014 Aug 19;3:439. doi: 10.1186/2193-1801-3-439. eCollection 2014.

25.

In silico analysis of protein Lys-N(𝜀)-acetylation in plants.

Rao RS, Thelen JJ, Miernyk JA.

Front Plant Sci. 2014 Aug 4;5:381. doi: 10.3389/fpls.2014.00381. eCollection 2014. Review.

26.

Is Lys-Nɛ-acetylation the next big thing in post-translational modifications?

Rao RS, Thelen JJ, Miernyk JA.

Trends Plant Sci. 2014 Sep;19(9):550-3. doi: 10.1016/j.tplants.2014.05.001. Epub 2014 May 25.

PMID:
24866592
27.

Characteristics and safety assessment of intractable proteins in genetically modified crops.

Bushey DF, Bannon GA, Delaney BF, Graser G, Hefford M, Jiang X, Lee TC, Madduri KM, Pariza M, Privalle LS, Ranjan R, Saab-Rincon G, Schafer BW, Thelen JJ, Zhang JX, Harper MS.

Regul Toxicol Pharmacol. 2014 Jul;69(2):154-70. doi: 10.1016/j.yrtph.2014.03.003. Epub 2014 Mar 22.

28.

A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement.

He R, Salvato F, Park JJ, Kim MJ, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR.

BMC Plant Biol. 2014 Feb 12;14:46. doi: 10.1186/1471-2229-14-46.

29.

Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases.

Swatek KN, Wilson RS, Ahsan N, Tritz RL, Thelen JJ.

Biochem J. 2014 Apr 1;459(1):15-25. doi: 10.1042/BJ20130035.

30.

A soybean acyl carrier protein, GmACP, is important for root nodule symbiosis.

Wang J, Tóth K, Tanaka K, Nguyen CT, Yan Z, Brechenmacher L, Dahmen J, Chen M, Thelen JJ, Qiu L, Stacey G.

Mol Plant Microbe Interact. 2014 May;27(5):415-23. doi: 10.1094/MPMI-09-13-0269-R.

31.

The potato tuber mitochondrial proteome.

Salvato F, Havelund JF, Chen M, Rao RS, Rogowska-Wrzesinska A, Jensen ON, Gang DR, Thelen JJ, Møller IM.

Plant Physiol. 2014 Feb;164(2):637-53. doi: 10.1104/pp.113.229054. Epub 2013 Dec 18.

32.

Circles within circles: crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation.

Rao R, Xu D, Thelen JJ, Miernyk JA.

BMC Bioinformatics. 2013;14 Suppl 14:S14. doi: 10.1186/1471-2105-14-S14-S14. Epub 2013 Oct 9.

33.

P³DB 3.0: From plant phosphorylation sites to protein networks.

Yao Q, Ge H, Wu S, Zhang N, Chen W, Xu C, Gao J, Thelen JJ, Xu D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1206-13. doi: 10.1093/nar/gkt1135. Epub 2013 Nov 15.

34.

Initial description of the developing soybean seed protein Lys-N(ε)-acetylome.

Smith-Hammond CL, Swatek KN, Johnston ML, Thelen JJ, Miernyk JA.

J Proteomics. 2014 Jan 16;96:56-66. doi: 10.1016/j.jprot.2013.10.038. Epub 2013 Nov 7.

PMID:
24211405
35.

Global quantitative proteomics using spectral counting: an inexpensive experimental and bioinformatics workflow for deep proteome coverage.

Balbuena TS, Demartini DR, Thelen JJ.

Methods Mol Biol. 2014;1072:171-83. doi: 10.1007/978-1-62703-631-3_13.

PMID:
24136522
36.

Purification of protein complexes and characterization of protein-protein interactions.

Swatek KN, Lee CB, Thelen JJ.

Methods Mol Biol. 2014;1062:609-28. doi: 10.1007/978-1-62703-580-4_32.

PMID:
24057389
37.

ACYL-LIPID DESATURASE2 is required for chilling and freezing tolerance in Arabidopsis.

Chen M, Thelen JJ.

Plant Cell. 2013 Apr;25(4):1430-44. doi: 10.1105/tpc.113.111179. Epub 2013 Apr 12.

38.

Biochemistry, proteomics, and phosphoproteomics of plant mitochondria from non-photosynthetic cells.

Havelund JF, Thelen JJ, Møller IM.

Front Plant Sci. 2013 Mar 13;4:51. doi: 10.3389/fpls.2013.00051. eCollection 2013.

39.

The response of Asterochloris erici (Ahmadjian) Skaloud et Peksa to desiccation: a proteomic approach.

Gasulla F, Jain R, Barreno E, Guéra A, Balbuena TS, Thelen JJ, Oliver MJ.

Plant Cell Environ. 2013 Jul;36(7):1363-78. doi: 10.1111/pce.12065. Epub 2013 Feb 4.

40.

A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology.

Ahsan N, Huang Y, Tovar-Mendez A, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ.

J Proteome Res. 2013 Feb 1;12(2):937-48. doi: 10.1021/pr3009995. Epub 2013 Jan 15.

41.

P(3)DB: An Integrated Database for Plant Protein Phosphorylation.

Yao Q, Bollinger C, Gao J, Xu D, Thelen JJ.

Front Plant Sci. 2012 Sep 7;3:206. doi: 10.3389/fpls.2012.00206. eCollection 2012.

42.

Environmental effects on allergen levels in commercially grown non-genetically modified soybeans: assessing variation across north america.

Stevenson SE, Woods CA, Hong B, Kong X, Thelen JJ, Ladics GS.

Front Plant Sci. 2012 Aug 27;3:196. doi: 10.3389/fpls.2012.00196. eCollection 2012.

43.

Predicting and analyzing protein phosphorylation sites in plants using musite.

Yao Q, Gao J, Bollinger C, Thelen JJ, Xu D.

Front Plant Sci. 2012 Aug 21;3:186. doi: 10.3389/fpls.2012.00186. eCollection 2012.

44.

"Scanning mutagenesis" of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex.

Ahsan N, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ.

Front Plant Sci. 2012 Jul 16;3:153. doi: 10.3389/fpls.2012.00153. eCollection 2012.

45.

Modulation of protein phosphorylation, N-glycosylation and Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection.

Melo-Braga MN, Verano-Braga T, León IR, Antonacci D, Nogueira FC, Thelen JJ, Larsen MR, Palmisano G.

Mol Cell Proteomics. 2012 Oct;11(10):945-56. Epub 2012 Jul 9.

46.

Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant equisetum hyemale.

Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ.

Front Plant Sci. 2012 Jun 26;3:131. doi: 10.3389/fpls.2012.00131. eCollection 2012.

47.

KiC assay: a quantitative mass spectrometry-based approach for kinase client screening and activity analysis [corrected].

Huang Y, Thelen JJ.

Methods Mol Biol. 2012;893:359-70. doi: 10.1007/978-1-61779-885-6_22. Erratum in: Methods Mol Biol. 2012;893:E1.

PMID:
22665311
48.

The proteomic future: where mass spectrometry should be taking us.

Thelen JJ, Miernyk JA.

Biochem J. 2012 Jun 1;444(2):169-81. doi: 10.1042/BJ20110363. Review.

PMID:
22574775
49.

The absence of heat shock protein HSP101 affects the proteome of mature and germinating maize embryos.

Lázaro-Mixteco PE, Nieto-Sotelo J, Swatek KN, Houston NL, Mendoza-Hernández G, Thelen JJ, Dinkova TD.

J Proteome Res. 2012 Jun 1;11(6):3246-58. doi: 10.1021/pr3000046. Epub 2012 May 11.

PMID:
22545728
50.

Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.

Meyer LJ, Gao J, Xu D, Thelen JJ.

Plant Physiol. 2012 May;159(1):517-28. doi: 10.1104/pp.111.191700. Epub 2012 Mar 22.

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