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Plant miRNA Conservation and Evolution.

Gramzow L, Theißen G.

Methods Mol Biol. 2019;1932:41-50. doi: 10.1007/978-1-4939-9042-9_3.


A Dead Gene Walking: Convergent Degeneration of a Clade of MADS-Box Genes in Crucifers.

Hoffmeier A, Gramzow L, Bhide AS, Kottenhagen N, Greifenstein A, Schubert O, Mummenhoff K, Becker A, Theißen G.

Mol Biol Evol. 2018 Nov 1;35(11):2618-2638. doi: 10.1093/molbev/msy142.


The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA.

Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033.


Array of MADS-Box Genes: Facilitator for Rapid Adaptation?

Theißen G, Rümpler F, Gramzow L.

Trends Plant Sci. 2018 Jul;23(7):563-576. doi: 10.1016/j.tplants.2018.04.008. Epub 2018 May 22. Review.


The floral homeotic protein SEPALLATA3 recognizes target DNA sequences by shape readout involving a conserved arginine residue in the MADS-domain.

Käppel S, Melzer R, Rümpler F, Gafert C, Theißen G.

Plant J. 2018 Jul;95(2):341-357. doi: 10.1111/tpj.13954. Epub 2018 Jun 4.


When the BRANCHED network bears fruit: how carpic dominance causes fruit dimorphism in Aethionema.

Lenser T, Tarkowská D, Novák O, Wilhelmsson PKI, Bennett T, Rensing SA, Strnad M, Theißen G.

Plant J. 2018 Apr;94(2):352-371. doi: 10.1111/tpj.13861. Epub 2018 Mar 22.


Developmental Control and Plasticity of Fruit and Seed Dimorphism in Aethionema arabicum.

Lenser T, Graeber K, Cevik ÖS, Adigüzel N, Dönmez AA, Grosche C, Kettermann M, Mayland-Quellhorst S, Mérai Z, Mohammadin S, Nguyen TP, Rümpler F, Schulze C, Sperber K, Steinbrecher T, Wiegand N, Strnad M, Scheid OM, Rensing SA, Schranz ME, Theißen G, Mummenhoff K, Leubner-Metzger G.

Plant Physiol. 2016 Nov;172(3):1691-1707. Epub 2016 Oct 4.


The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.

Wu F, Shi X, Lin X, Liu Y, Chong K, Theißen G, Meng Z.

Plant J. 2017 Jan;89(2):310-324. doi: 10.1111/tpj.13386. Epub 2017 Feb 4.


MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution.

Theißen G, Melzer R, Rümpler F.

Development. 2016 Sep 15;143(18):3259-71. doi: 10.1242/dev.134080. Review.


The significance of developmental robustness for species diversity.

Melzer R, Theißen G.

Ann Bot. 2016 Apr;117(5):725-32. doi: 10.1093/aob/mcw018. Epub 2016 Mar 18.


Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).

Schilling S, Gramzow L, Lobbes D, Kirbis A, Weilandt L, Hoffmeier A, Junker A, Weigelt-Fischer K, Klukas C, Wu F, Meng Z, Altmann T, Theißen G.

Plant J. 2015 Dec;84(6):1059-72. doi: 10.1111/tpj.13055. Epub 2015 Dec 7.


Did Convergent Protein Evolution Enable Phytoplasmas to Generate 'Zombie Plants'?

Rümpler F, Gramzow L, Theißen G, Melzer R.

Trends Plant Sci. 2015 Dec;20(12):798-806. doi: 10.1016/j.tplants.2015.08.004. Epub 2015 Oct 10. Review.


Phylogenomics reveals surprising sets of essential and dispensable clades of MIKC(c)-group MADS-box genes in flowering plants.

Gramzow L, Theißen G.

J Exp Zool B Mol Dev Evol. 2015 Jun;324(4):353-62. doi: 10.1002/jez.b.22598. Epub 2015 Feb 11.


Evolutionary game theory: cells as players.

Hummert S, Bohl K, Basanta D, Deutsch A, Werner S, Theissen G, Schroeter A, Schuster S.

Mol Biosyst. 2014 Dec;10(12):3044-65. doi: 10.1039/c3mb70602h. Review.


Evolutionary game theory: molecules as players.

Bohl K, Hummert S, Werner S, Basanta D, Deutsch A, Schuster S, Theissen G, Schroeter A.

Mol Biosyst. 2014 Dec;10(12):3066-74. doi: 10.1039/c3mb70601j. Review.


Structural basis for the oligomerization of the MADS domain transcription factor SEPALLATA3 in Arabidopsis.

Puranik S, Acajjaoui S, Conn S, Costa L, Conn V, Vial A, Marcellin R, Melzer R, Brown E, Hart D, Theißen G, Silva CS, Parcy F, Dumas R, Nanao M, Zubieta C.

Plant Cell. 2014 Sep;26(9):3603-15. doi: 10.1105/tpc.114.127910. Epub 2014 Sep 16.


Arabidopsis SEPALLATA proteins differ in cooperative DNA-binding during the formation of floral quartet-like complexes.

Jetha K, Theißen G, Melzer R.

Nucleic Acids Res. 2014;42(17):10927-42. doi: 10.1093/nar/gku755. Epub 2014 Sep 2.


My favourite flowering image: a cob of pod corn.

Theißen G.

J Exp Bot. 2014 Dec;65(22):6751-4. doi: 10.1093/jxb/ert461. Epub 2014 Jun 30.


Horizontal gene transfer and functional diversification of plant cell wall degrading polygalacturonases: Key events in the evolution of herbivory in beetles.

Kirsch R, Gramzow L, Theißen G, Siegfried BD, Ffrench-Constant RH, Heckel DG, Pauchet Y.

Insect Biochem Mol Biol. 2014 Sep;52:33-50. doi: 10.1016/j.ibmb.2014.06.008. Epub 2014 Jun 28.


DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution.

Melzer R, Härter A, Rümpler F, Kim S, Soltis PS, Soltis DE, Theißen G.

Ann Bot. 2014 Nov;114(7):1431-43. doi: 10.1093/aob/mcu094. Epub 2014 Jun 5.


MADS goes genomic in conifers: towards determining the ancestral set of MADS-box genes in seed plants.

Gramzow L, Weilandt L, Theißen G.

Ann Bot. 2014 Nov;114(7):1407-29. doi: 10.1093/aob/mcu066. Epub 2014 May 22.


The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas.

Lin X, Wu F, Du X, Shi X, Liu Y, Liu S, Hu Y, Theißen G, Meng Z.

New Phytol. 2014 Apr;202(2):689-702. doi: 10.1111/nph.12657. Epub 2013 Dec 24.


Molecular mechanisms involved in convergent crop domestication.

Lenser T, Theißen G.

Trends Plant Sci. 2013 Dec;18(12):704-14. doi: 10.1016/j.tplants.2013.08.007. Epub 2013 Sep 12. Review.


FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes.

Ruelens P, de Maagd RA, Proost S, Theißen G, Geuten K, Kaufmann K.

Nat Commun. 2013;4:2280. doi: 10.1038/ncomms3280.


The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.


Functional conservation of MIKC*-Type MADS box genes in Arabidopsis and rice pollen maturation.

Liu Y, Cui S, Wu F, Yan S, Lin X, Du X, Chong K, Schilling S, Theißen G, Meng Z.

Plant Cell. 2013 Apr;25(4):1288-303. doi: 10.1105/tpc.113.110049. Epub 2013 Apr 23.


The seirena B class floral homeotic mutant of California Poppy (Eschscholzia californica) reveals a function of the enigmatic PI motif in the formation of specific multimeric MADS domain protein complexes.

Lange M, Orashakova S, Lange S, Melzer R, Theißen G, Smyth DR, Becker A.

Plant Cell. 2013 Feb;25(2):438-53. doi: 10.1105/tpc.112.105809. Epub 2013 Feb 26.


Phylogenomics of MADS-Box Genes in Plants - Two Opposing Life Styles in One Gene Family.

Gramzow L, Theißen G.

Biology (Basel). 2013 Sep 12;2(3):1150-64. doi: 10.3390/biology2031150.


Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).

Yang X, Wu F, Lin X, Du X, Chong K, Gramzow L, Schilling S, Becker A, Theißen G, Meng Z.

PLoS One. 2012;7(12):e51435. doi: 10.1371/journal.pone.0051435. Epub 2012 Dec 12.


Evidence that an evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae) was caused by a change in the control of valve margin identity genes.

Mühlhausen A, Lenser T, Mummenhoff K, Theißen G.

Plant J. 2013 Mar;73(5):824-35. doi: 10.1111/tpj.12079. Epub 2013 Jan 18.


Selaginella Genome Analysis - Entering the "Homoplasy Heaven" of the MADS World.

Gramzow L, Barker E, Schulz C, Ambrose B, Ashton N, Theißen G, Litt A.

Front Plant Sci. 2012 Sep 14;3:214. doi: 10.3389/fpls.2012.00214. eCollection 2012.


GC content dependency of open reading frame prediction via stop codon frequencies.

Pohl M, Theissen G, Schuster S.

Gene. 2012 Dec 15;511(2):441-6. doi: 10.1016/j.gene.2012.09.031. Epub 2012 Sep 19.


Loss of deeply conserved C-class floral homeotic gene function and C- and E-class protein interaction in a double-flowered ranunculid mutant.

Galimba KD, Tolkin TR, Sullivan AM, Melzer R, Theißen G, Di Stilio VS.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):E2267-75. doi: 10.1073/pnas.1203686109. Epub 2012 Aug 1.


Molecular genetic basis of pod corn (Tunicate maize).

Wingen LU, Münster T, Faigl W, Deleu W, Sommer H, Saedler H, Theißen G.

Proc Natl Acad Sci U S A. 2012 May 1;109(18):7115-20. doi: 10.1073/pnas.1111670109. Epub 2012 Apr 18.


MADS and more: transcription factors that shape the plant.

Melzer R, Theissen G.

Methods Mol Biol. 2011;754:3-18. doi: 10.1007/978-1-61779-154-3_1. Review.


The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.


A double-flowered variety of lesser periwinkle (Vinca minor fl. pl.) that has persisted in the wild for more than 160 years.

Wang YQ, Melzer R, Theissen G.

Ann Bot. 2011 Jun;107(9):1445-52. doi: 10.1093/aob/mcr090. Epub 2011 Apr 27.


Conserved differential expression of paralogous DEFICIENS- and GLOBOSA-like MADS-box genes in the flowers of Orchidaceae: refining the 'orchid code'.

Mondragón-Palomino M, Theissen G.

Plant J. 2011 Jun;66(6):1008-19. doi: 10.1111/j.1365-313X.2011.04560.x. Epub 2011 Apr 12.


SplamiR--prediction of spliced miRNAs in plants.

Thieme CJ, Gramzow L, Lobbes D, Theissen G.

Bioinformatics. 2011 May 1;27(9):1215-23. doi: 10.1093/bioinformatics/btr132. Epub 2011 Mar 17.


To be or not to be the odd one out--allele-specific transcription in pentaploid dogroses (Rosa L. sect. Caninae (DC.) Ser).

Ritz CM, Köhnen I, Groth M, Theissen G, Wissemann V.

BMC Plant Biol. 2011 Feb 23;11:37. doi: 10.1186/1471-2229-11-37.


Molecular interactions of orthologues of floral homeotic proteins from the gymnosperm Gnetum gnemon provide a clue to the evolutionary origin of 'floral quartets'.

Wang YQ, Melzer R, Theissen G.

Plant J. 2010 Oct;64(2):177-90. doi: 10.1111/j.1365-313X.2010.04325.x. Epub 2010 Sep 16.


GORDITA (AGL63) is a young paralog of the Arabidopsis thaliana B(sister) MADS box gene ABS (TT16) that has undergone neofunctionalization.

Erdmann R, Gramzow L, Melzer R, Theissen G, Becker A.

Plant J. 2010 Sep;63(6):914-24. doi: 10.1111/j.1365-313X.2010.04290.x.


A hitchhiker's guide to the MADS world of plants.

Gramzow L, Theissen G.

Genome Biol. 2010;11(6):214. doi: 10.1186/gb-2010-11-6-214. Epub 2010 Jun 28. Review.


Cooperation and cheating in microbial exoenzyme production--theoretical analysis for biotechnological applications.

Schuster S, Kreft JU, Brenner N, Wessely F, Theissen G, Ruppin E, Schroeter A.

Biotechnol J. 2010 Jul;5(7):751-8. doi: 10.1002/biot.200900303.


On the origin of MADS-domain transcription factors.

Gramzow L, Ritz MS, Theissen G.

Trends Genet. 2010 Apr;26(4):149-53. doi: 10.1016/j.tig.2010.01.004. Epub 2010 Mar 10.


Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).

Cui R, Han J, Zhao S, Su K, Wu F, Du X, Xu Q, Chong K, Theissen G, Meng Z.

Plant J. 2010 Mar;61(5):767-81. doi: 10.1111/j.1365-313X.2009.04101.x. Epub 2009 Dec 9.


The naked and the dead: the ABCs of gymnosperm reproduction and the origin of the angiosperm flower.

Melzer R, Wang YQ, Theissen G.

Semin Cell Dev Biol. 2010 Feb;21(1):118-28. doi: 10.1016/j.semcdb.2009.11.015. Epub 2009 Nov 26. Review.


Floral visitation and reproductive traits of Stamenoid petals, a naturally occurring floral homeotic variant of Capsella bursa-pastoris (Brassicaceae).

Ziermann J, Ritz MS, Hameister S, Abel C, Hoffmann MH, Neuffer B, Theissen G.

Planta. 2009 Nov;230(6):1239-49. doi: 10.1007/s00425-009-1018-z. Epub 2009 Sep 23.


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