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A Neighboring Aromatic-Aromatic Amino Acid Combination Governs Activity Divergence between Tomato Phytoene Synthases.

Cao H, Luo H, Yuan H, Eissa MA, Thannhauser TW, Welsch R, Hao YJ, Cheng L, Li L.

Plant Physiol. 2019 Aug;180(4):1988-2003. doi: 10.1104/pp.19.00384. Epub 2019 Jun 20.


The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z.

Nat Genet. 2019 Jun;51(6):1044-1051. doi: 10.1038/s41588-019-0410-2. Epub 2019 May 13.


Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection.

Gonda I, Ashrafi H, Lyon DA, Strickler SR, Hulse-Kemp AM, Ma Q, Sun H, Stoffel K, Powell AF, Futrell S, Thannhauser TW, Fei Z, Van Deynze AE, Mueller LA, Giovannoni JJ, Foolad MR.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.02.0010.


Multi-omics analysis unravels a segregated metabolic flux network that tunes co-utilization of sugar and aromatic carbons in Pseudomonas putida.

Kukurugya MA, Mendonca CM, Solhtalab M, Wilkes RA, Thannhauser TW, Aristilde L.

J Biol Chem. 2019 May 24;294(21):8464-8479. doi: 10.1074/jbc.RA119.007885. Epub 2019 Apr 1.


Proteome Profile and Genome Refinement of the Tomato-Pathogenic Bacterium Clavibacter michiganensis subsp. michiganensis.

Peritore-Galve FC, Schneider DJ, Yang Y, Thannhauser TW, Smart CD, Stodghill P.

Proteomics. 2019 Apr;19(7):e1800224. doi: 10.1002/pmic.201800224. Epub 2019 Mar 8. No abstract available.


Effects of Selenium Supplementation on Glucosinolate Biosynthesis in Broccoli.

Tian M, Yang Y, Ávila FW, Fish T, Yuan H, Hui M, Pan S, Thannhauser TW, Li L.

J Agric Food Chem. 2018 Aug 1;66(30):8036-8044. doi: 10.1021/acs.jafc.8b03396. Epub 2018 Jul 18.


Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato.

Yazdani M, Sun Z, Yuan H, Zeng S, Thannhauser TW, Vrebalov J, Ma Q, Xu Y, Fei Z, Van Eck J, Tian S, Tadmor Y, Giovannoni JJ, Li L.

Plant Biotechnol J. 2019 Jan;17(1):33-49. doi: 10.1111/pbi.12945. Epub 2018 May 31.


Association of Proteomics Changes with Al-Sensitive Root Zones in Switchgrass.

Rangu M, Ye Z, Bhatti S, Zhou S, Yang Y, Fish T, Thannhauser TW.

Proteomes. 2018 Mar 22;6(2). pii: E15. doi: 10.3390/proteomes6020015.


High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catalá C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC.

Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9.


Clp Protease and OR Directly Control the Proteostasis of Phytoene Synthase, the Crucial Enzyme for Carotenoid Biosynthesis in Arabidopsis.

Welsch R, Zhou X, Yuan H, Álvarez D, Sun T, Schlossarek D, Yang Y, Shen G, Zhang H, Rodriguez-Concepcion M, Thannhauser TW, Li L.

Mol Plant. 2018 Jan 8;11(1):149-162. doi: 10.1016/j.molp.2017.11.003. Epub 2017 Nov 16.


Selenium-Induced Toxicity Is Counteracted by Sulfur in Broccoli (Brassica oleracea L. var. italica).

Tian M, Hui M, Thannhauser TW, Pan S, Li L.

Front Plant Sci. 2017 Aug 18;8:1425. doi: 10.3389/fpls.2017.01425. eCollection 2017.


Evaluation of a Bead-Free Coimmunoprecipitation Technique for Identification of Virus-Host Protein Interactions Using High-Resolution Mass Spectrometry.

DeBlasio SL, Bereman MS, Mahoney J, Thannhauser TW, Gray SM, MacCoss MJ, Cilia Heck M.

J Biomol Tech. 2017 Sep;28(3):111-121. doi: 10.7171/jbt.17-2803-002. Epub 2017 Jul 24.


Effects of Al3+ and La3+ Trivalent Metal Ions on Tomato Fruit Proteomes.

Sangireddy S, Okekeogbu I, Ye Z, Zhou S, Howe KJ, Fish T, Thannhauser TW.

Proteomes. 2017 Feb 11;5(1). pii: E7. doi: 10.3390/proteomes5010007.


Quantitative iTRAQ Proteomics Revealed Possible Roles for Antioxidant Proteins in Sorghum Aluminum Tolerance.

Zhou D, Yang Y, Zhang J, Jiang F, Craft E, Thannhauser TW, Kochian LV, Liu J.

Front Plant Sci. 2017 Jan 9;7:2043. doi: 10.3389/fpls.2016.02043. eCollection 2016.


Drought-Induced Leaf Proteome Changes in Switchgrass Seedlings.

Ye Z, Sangireddy S, Okekeogbu I, Zhou S, Yu CL, Hui D, Howe KJ, Fish T, Thannhauser TW.

Int J Mol Sci. 2016 Aug 2;17(8). pii: E1251. doi: 10.3390/ijms17081251.


Development of a laser capture microscope-based single-cell-type proteomics tool for studying proteomes of individual cell layers of plant roots.

Zhu Y, Li H, Bhatti S, Zhou S, Yang Y, Fish T, Thannhauser TW.

Hortic Res. 2016 Jun 1;3:16026. doi: 10.1038/hortres.2016.26. eCollection 2016.


Selenium promotes sulfur accumulation and plant growth in wheat (Triticum aestivum).

Boldrin PF, de Figueiredo MA, Yang Y, Luo H, Giri S, Hart JJ, Faquin V, Guilherme LR, Thannhauser TW, Li L.

Physiol Plant. 2016 Sep;158(1):80-91. doi: 10.1111/ppl.12465. Epub 2016 Jun 9.


Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor.

Martin LB, Sherwood RW, Nicklay JJ, Yang Y, Muratore-Schroeder TL, Anderson ET, Thannhauser TW, Rose JK, Zhang S.

Proteomics. 2016 Aug;16(15-16):2081-94. doi: 10.1002/pmic.201500450. Epub 2016 May 10.


Proteome Modification in Tomato Plants upon Long-Term Aluminum Treatment.

Zhou S, Okekeogbu I, Sangireddy S, Ye Z, Li H, Bhatti S, Hui D, McDonald DW, Yang Y, Giri S, Howe KJ, Fish T, Thannhauser TW.

J Proteome Res. 2016 May 6;15(5):1670-84. doi: 10.1021/acs.jproteome.6b00128. Epub 2016 Apr 18.


Plastid ribosomal protein S5 is involved in photosynthesis, plant development, and cold stress tolerance in Arabidopsis.

Zhang J, Yuan H, Yang Y, Fish T, Lyi SM, Thannhauser TW, Zhang L, Li L.

J Exp Bot. 2016 Apr;67(9):2731-44. doi: 10.1093/jxb/erw106. Epub 2016 Mar 22.


A Single Amino Acid Substitution in an ORANGE Protein Promotes Carotenoid Overaccumulation in Arabidopsis.

Yuan H, Owsiany K, Sheeja TE, Zhou X, Rodriguez C, Li Y, Welsch R, Chayut N, Yang Y, Thannhauser TW, Parthasarathy MV, Xu Q, Deng X, Fei Z, Schaffer A, Katzir N, Burger J, Tadmor Y, Li L.

Plant Physiol. 2015 Sep;169(1):421-31. doi: 10.1104/pp.15.00971. Epub 2015 Jul 29.


Arabidopsis OR proteins are the major posttranscriptional regulators of phytoene synthase in controlling carotenoid biosynthesis.

Zhou X, Welsch R, Yang Y, Álvarez D, Riediger M, Yuan H, Fish T, Liu J, Thannhauser TW, Li L.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3558-63. doi: 10.1073/pnas.1420831112. Epub 2015 Feb 9.


Draft Genome Sequence of New Bacillus cereus Strain tsu1.

Li H, Zhou S, Johnson T, Vercruysse K, Ropelewski AJ, Thannhauser TW.

Genome Announc. 2014 Dec 18;2(6). pii: e01294-14. doi: 10.1128/genomeA.01294-14.


Impact of selenium supply on Se-methylselenocysteine and glucosinolate accumulation in selenium-biofortified Brassica sprouts.

Avila FW, Yang Y, Faquin V, Ramos SJ, Guilherme LR, Thannhauser TW, Li L.

Food Chem. 2014 Dec 15;165:578-86. doi: 10.1016/j.foodchem.2014.05.134. Epub 2014 Jun 4.


Effect of Aluminum Treatment on Proteomes of Radicles of Seeds Derived from Al-Treated Tomato Plants.

Okekeogbu I, Ye Z, Sangireddy SR, Li H, Bhatti S, Hui D, Zhou S, Howe KJ, Fish T, Yang Y, Thannhauser TW.

Proteomes. 2014 Mar 28;2(2):169-190. doi: 10.3390/proteomes2020169.


Evidence of the biochemical basis of host virulence in the greenbug aphid, Schizaphis graminum (Homoptera: Aphididae).

Pinheiro P, Bereman MS, Burd J, Pals M, Armstrong S, Howe KJ, Thannhauser TW, MacCoss MJ, Gray SM, Cilia M.

J Proteome Res. 2014 Apr 4;13(4):2094-108. doi: 10.1021/pr4012415. Epub 2014 Mar 18.


A comparative study of lectin affinity based plant N-glycoproteome profiling using tomato fruit as a model.

Ruiz-May E, Hucko S, Howe KJ, Zhang S, Sherwood RW, Thannhauser TW, Rose JK.

Mol Cell Proteomics. 2014 Feb;13(2):566-79. doi: 10.1074/mcp.M113.028969. Epub 2013 Nov 6.


Assessment of the anticancer compounds Se-methylselenocysteine and glucosinolates in Se-biofortified broccoli (Brassica oleracea L. var. italica) sprouts and florets.

Ávila FW, Faquin V, Yang Y, Ramos SJ, Guilherme LR, Thannhauser TW, Li L.

J Agric Food Chem. 2013 Jul 3;61(26):6216-23. doi: 10.1021/jf4016834. Epub 2013 Jun 24.


A workflow for large-scale empirical identification of cell wall N-linked glycoproteins of tomato (Solanum lycopersicum) fruit by tandem mass spectrometry.

Thannhauser TW, Shen M, Sherwood R, Howe K, Fish T, Yang Y, Chen W, Zhang S.

Electrophoresis. 2013 Aug;34(16):2417-31. doi: 10.1002/elps.201200656.


Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development.

Wang YQ, Yang Y, Fei Z, Yuan H, Fish T, Thannhauser TW, Mazourek M, Kochian LV, Wang X, Li L.

J Exp Bot. 2013 Feb;64(4):949-61. doi: 10.1093/jxb/ers375. Epub 2013 Jan 10.


Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission.

Cilia M, Peter KA, Bereman MS, Howe K, Fish T, Smith D, Gildow F, MacCoss MJ, Thannhauser TW, Gray SM.

PLoS One. 2012;7(10):e48177. doi: 10.1371/journal.pone.0048177. Epub 2012 Oct 30.


Analytical technologies for identification and characterization of the plant N-glycoproteome.

Ruiz-May E, Thannhauser TW, Zhang S, Rose JK.

Front Plant Sci. 2012 Jul 4;3:150. doi: 10.3389/fpls.2012.00150. eCollection 2012.


Comparative characterization of the glycosylation profiles of an influenza hemagglutinin produced in plant and insect hosts.

Zhang S, Sherwood RW, Yang Y, Fish T, Chen W, McCardle JA, Jones RM, Yusibov V, May ER, Rose JK, Thannhauser TW.

Proteomics. 2012 Apr;12(8):1269-88. doi: 10.1002/pmic.201100474.


Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case.

Lopez-Casado G, Covey PA, Bedinger PA, Mueller LA, Thannhauser TW, Zhang S, Fei Z, Giovannoni JJ, Rose JK.

Proteomics. 2012 Mar;12(6):761-74. doi: 10.1002/pmic.201100164.


The Or gene enhances carotenoid accumulation and stability during post-harvest storage of potato tubers.

Li L, Yang Y, Xu Q, Owsiany K, Welsch R, Chitchumroonchokchai C, Lu S, Van Eck J, Deng XX, Failla M, Thannhauser TW.

Mol Plant. 2012 Mar;5(2):339-52. doi: 10.1093/mp/ssr099. Epub 2011 Dec 8.


Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis).

Zhou X, Fei Z, Thannhauser TW, Li L.

BMC Plant Biol. 2011 Nov 23;11:169. doi: 10.1186/1471-2229-11-169.


Evaluation of different multidimensional LC-MS/MS pipelines for isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomic analysis of potato tubers in response to cold storage.

Yang Y, Qiang X, Owsiany K, Zhang S, Thannhauser TW, Li L.

J Proteome Res. 2011 Oct 7;10(10):4647-60. doi: 10.1021/pr200455s. Epub 2011 Sep 6.


Biomarker discovery from the top down: Protein biomarkers for efficient virus transmission by insects (Homoptera: Aphididae) discovered by coupling genetics and 2-D DIGE.

Cilia M, Howe K, Fish T, Smith D, Mahoney J, Tamborindeguy C, Burd J, Thannhauser TW, Gray S.

Proteomics. 2011 Jun;11(12):2440-58. doi: 10.1002/pmic.201000519.


Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis.

Catalá C, Howe KJ, Hucko S, Rose JK, Thannhauser TW.

Proteomics. 2011 Apr;11(8):1530-44. doi: 10.1002/pmic.201000424. Epub 2011 Mar 7.


Genetics coupled to quantitative intact proteomics links heritable aphid and endosymbiont protein expression to circulative polerovirus transmission.

Cilia M, Tamborindeguy C, Fish T, Howe K, Thannhauser TW, Gray S.

J Virol. 2011 Mar;85(5):2148-66. doi: 10.1128/JVI.01504-10. Epub 2010 Dec 15.


Tangible benefits of the aphid Acyrthosiphon pisum genome sequencing for aphid proteomics: Enhancements in protein identification and data validation for homology-based proteomics.

Cilia M, Tamborindeguy C, Rolland M, Howe K, Thannhauser TW, Gray S.

J Insect Physiol. 2011 Jan;57(1):179-90. doi: 10.1016/j.jinsphys.2010.11.001. Epub 2010 Nov 18.


Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis.

Yeats TH, Howe KJ, Matas AJ, Buda GJ, Thannhauser TW, Rose JK.

J Exp Bot. 2010 Aug;61(13):3759-71. doi: 10.1093/jxb/erq194. Epub 2010 Jun 21.


Aluminum induced proteome changes in tomato cotyledons.

Zhou S, Sauve R, Thannhauser TW.

Plant Signal Behav. 2009 Aug;4(8):769-72. Epub 2009 Aug 4.


A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins.

Cilia M, Fish T, Yang X, McLaughlin M, Thannhauser TW, Gray S.

J Biomol Tech. 2009 Sep;20(4):201-15.


Involvement of a broccoli COQ5 methyltransferase in the production of volatile selenium compounds.

Zhou X, Yuan Y, Yang Y, Rutzke M, Thannhauser TW, Kochian LV, Li L.

Plant Physiol. 2009 Oct;151(2):528-40. doi: 10.1104/pp.109.142521. Epub 2009 Aug 5.


Proteome changes induced by aluminium stress in tomato roots.

Zhou S, Sauvé R, Thannhauser TW.

J Exp Bot. 2009;60(6):1849-57. doi: 10.1093/jxb/erp065. Epub 2009 Mar 30.


Drosophila ABC transporter, DmHMT-1, confers tolerance to cadmium. DmHMT-1 and its yeast homolog, SpHMT-1, are not essential for vacuolar phytochelatin sequestration.

Sooksa-Nguan T, Yakubov B, Kozlovskyy VI, Barkume CM, Howe KJ, Thannhauser TW, Rutzke MA, Hart JJ, Kochian LV, Rea PA, Vatamaniuk OK.

J Biol Chem. 2009 Jan 2;284(1):354-62. doi: 10.1074/jbc.M806501200. Epub 2008 Nov 10.


Effects of ascorbic acid, phytic acid and tannic acid on iron bioavailability from reconstituted ferritin measured by an in vitro digestion-Caco-2 cell model.

Jin F, Frohman C, Thannhauser TW, Welch RM, Glahn RP.

Br J Nutr. 2009 Apr;101(7):972-81. doi: 10.1017/S0007114508055621. Epub 2008 Aug 28.


Role of copper,zinc-superoxide dismutase in catalyzing nitrotyrosine formation in murine liver.

Zhu JH, Zhang X, Roneker CA, McClung JP, Zhang S, Thannhauser TW, Ripoll DR, Sun Q, Lei XG.

Free Radic Biol Med. 2008 Sep 1;45(5):611-8. doi: 10.1016/j.freeradbiomed.2008.05.018. Epub 2008 May 28.


An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.

Alós E, Roca M, Iglesias DJ, Mínguez-Mosquera MI, Damasceno CM, Thannhauser TW, Rose JK, Talón M, Cercós M.

Plant Physiol. 2008 Jul;147(3):1300-15. doi: 10.1104/pp.108.119917. Epub 2008 May 8.

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