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DNA- and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters.

Gülay A, Fowler SJ, Tatari K, Thamdrup B, Albrechtsen HJ, Al-Soud WA, Sørensen SJ, Smets BF.

mBio. 2019 Nov 5;10(6). pii: e01870-19. doi: 10.1128/mBio.01870-19.


Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies.

Klawonn I, Eichner MJ, Wilson ST, Moradi N, Thamdrup B, Kümmel S, Gehre M, Khalili A, Grossart HP, Karl DM, Ploug H.

ISME J. 2020 Feb;14(2):399-412. doi: 10.1038/s41396-019-0514-9. Epub 2019 Oct 21.


Baltic Sea methanogens compete with acetogens for electrons from metallic iron.

Palacios PA, Snoeyenbos-West O, Löscher CR, Thamdrup B, Rotaru AE.

ISME J. 2019 Dec;13(12):3011-3023. doi: 10.1038/s41396-019-0490-0. Epub 2019 Aug 23.


Impacts of typhoon-induced heavy rainfalls and resultant freshwater runoff on the partitioning of organic carbon oxidation and nutrient dynamics in the intertidal sediments of the Han River estuary, Yellow Sea.

Mok JS, Kim SH, Kim J, Cho H, An SU, Choi A, Kim B, Yoon C, Thamdrup B, Hyun JH.

Sci Total Environ. 2019 Nov 15;691:858-867. doi: 10.1016/j.scitotenv.2019.07.031. Epub 2019 Jul 4.


Anammox and partial nitritation in the mainstream of a wastewater treatment plant in a temperate region (Denmark).

Kamp A, Ottosen LDM, Thøgersen NB, Revsbech NP, Thamdrup B, Andersen MH.

Water Sci Technol. 2019 Apr;79(7):1397-1405. doi: 10.2166/wst.2019.141.


Freshwater copepod carcasses as pelagic microsites of dissimilatory nitrate reduction to ammonium.

Stief P, Lundgaard ASB, Treusch AH, Thamdrup B, Grossart HP, Glud RN.

FEMS Microbiol Ecol. 2018 Oct 1;94(10). doi: 10.1093/femsec/fiy144.


Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria.

Ganesh S, Bertagnolli AD, Bristow LA, Padilla CC, Blackwood N, Aldunate M, Bourbonnais A, Altabet MA, Malmstrom RR, Woyke T, Ulloa O, Konstantinidis KT, Thamdrup B, Stewart FJ.

ISME J. 2018 Nov;12(11):2706-2722. doi: 10.1038/s41396-018-0223-9. Epub 2018 Jul 10.


Conductive Particles Enable Syntrophic Acetate Oxidation between Geobacter and Methanosarcina from Coastal Sediments.

Rotaru AE, Calabrese F, Stryhanyuk H, Musat F, Shrestha PM, Weber HS, Snoeyenbos-West OLO, Hall POJ, Richnow HH, Musat N, Thamdrup B.

mBio. 2018 May 1;9(3). pii: e00226-18. doi: 10.1128/mBio.00226-18.


Effect of settled diatom-aggregates on benthic nitrogen cycling.

Marzocchi U, Thamdrup B, Stief P, Glud RN.

Limnol Oceanogr. 2018 Jan;63(1):431-444. doi: 10.1002/lno.10641. Epub 2017 Aug 9.


Nitrogen Loss from Pristine Carbonate-Rock Aquifers of the Hainich Critical Zone Exploratory (Germany) Is Primarily Driven by Chemolithoautotrophic Anammox Processes.

Kumar S, Herrmann M, Thamdrup B, Schwab VF, Geesink P, Trumbore SE, Totsche KU, Küsel K.

Front Microbiol. 2017 Oct 10;8:1951. doi: 10.3389/fmicb.2017.01951. eCollection 2017.


Novel anammox bacteria and nitrogen loss from Lake Superior.

Crowe SA, Treusch AH, Forth M, Li J, Magen C, Canfield DE, Thamdrup B, Katsev S.

Sci Rep. 2017 Oct 23;7(1):13757. doi: 10.1038/s41598-017-12270-1.


Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column.

Bertagnolli AD, Padilla CC, Glass JB, Thamdrup B, Stewart FJ.

Environ Microbiol. 2017 Nov;19(11):4392-4416. doi: 10.1111/1462-2920.13879. Epub 2017 Nov 2.


Low nitrous oxide production through nitrifier-denitrification in intermittent-feed high-rate nitritation reactors.

Su Q, Ma C, Domingo-Félez C, Kiil AS, Thamdrup B, Jensen MM, Smets BF.

Water Res. 2017 Oct 15;123:429-438. doi: 10.1016/j.watres.2017.06.067. Epub 2017 Jun 24.


Pathways and Controls of N2O Production in Nitritation-Anammox Biomass.

Ma C, Jensen MM, Smets BF, Thamdrup B.

Environ Sci Technol. 2017 Aug 15;51(16):8981-8991. doi: 10.1021/acs.est.7b01225. Epub 2017 Jul 26.


Challenges in using allylthiourea and chlorate as specific nitrification inhibitors.

Tatari K, Gülay A, Thamdrup B, Albrechtsen HJ, Smets BF.

Chemosphere. 2017 Sep;182:301-305. doi: 10.1016/j.chemosphere.2017.05.005. Epub 2017 May 3.


Anaerobic Methanotrophic Archaea of the ANME-2d Cluster Are Active in a Low-sulfate, Iron-rich Freshwater Sediment.

Weber HS, Habicht KS, Thamdrup B.

Front Microbiol. 2017 Apr 12;8:619. doi: 10.3389/fmicb.2017.00619. eCollection 2017.


Intracellular Nitrate of Marine Diatoms as a Driver of Anaerobic Nitrogen Cycling in Sinking Aggregates.

Kamp A, Stief P, Bristow LA, Thamdrup B, Glud RN.

Front Microbiol. 2016 Nov 1;7:1669. eCollection 2016.


Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters.

Bristow LA, Dalsgaard T, Tiano L, Mills DB, Bertagnolli AD, Wright JJ, Hallam SJ, Ulloa O, Canfield DE, Revsbech NP, Thamdrup B.

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10601-6. doi: 10.1073/pnas.1600359113. Epub 2016 Sep 6.


SAR11 bacteria linked to ocean anoxia and nitrogen loss.

Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ.

Nature. 2016 Aug 11;536(7615):179-83. Epub 2016 Aug 3.


NC10 bacteria in marine oxygen minimum zones.

Padilla CC, Bristow LA, Sarode N, Garcia-Robledo E, Gómez Ramírez E, Benson CR, Bourbonnais A, Altabet MA, Girguis PR, Thamdrup B, Stewart FJ.

ISME J. 2016 Aug;10(8):2067-71. doi: 10.1038/ismej.2015.262. Epub 2016 Feb 26.


BIOGEOCHEMISTRY. A new diet for methane oxidizers.

Rotaru AE, Thamdrup B.

Science. 2016 Feb 12;351(6274):658. doi: 10.1126/science.aaf0741. No abstract available.


Anaerobic Nitrogen Turnover by Sinking Diatom Aggregates at Varying Ambient Oxygen Levels.

Stief P, Kamp A, Thamdrup B, Glud RN.

Front Microbiol. 2016 Feb 5;7:98. doi: 10.3389/fmicb.2016.00098. eCollection 2016.


Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ.

ISME J. 2015 Dec;9(12):2682-96. doi: 10.1038/ismej.2015.44. Epub 2015 Apr 7.


Significance of archaeal nitrification in hypoxic waters of the Baltic Sea.

Berg C, Vandieken V, Thamdrup B, Jürgens K.

ISME J. 2015 Jun;9(6):1319-32. doi: 10.1038/ismej.2014.218. Epub 2014 Nov 25.


Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF.

mBio. 2014 Oct 28;5(6):e01966. doi: 10.1128/mBio.01966-14.


A model-based insight into the coupling of nitrogen and sulfur cycles in a coastal upwelling system.

Azhar MA, Canfield DE, Fennel K, Thamdrup B, Bjerrum CJ.

J Geophys Res Biogeosci. 2014 Mar;119(3):264-285. Epub 2014 Mar 19.


Hydrogen, acetate, and lactate as electron donors for microbial manganese reduction in a manganese-rich coastal marine sediment.

Vandieken V, Finke N, Thamdrup B.

FEMS Microbiol Ecol. 2014 Mar;87(3):733-45. doi: 10.1111/1574-6941.12259. Epub 2013 Dec 11.


Vertical partitioning of nitrogen-loss processes across the oxic-anoxic interface of an oceanic oxygen minimum zone.

De Brabandere L, Canfield DE, Dalsgaard T, Friederich GE, Revsbech NP, Ulloa O, Thamdrup B.

Environ Microbiol. 2014 Oct;16(10):3041-54. doi: 10.1111/1462-2920.12255. Epub 2013 Sep 30.


Stark contrast in denitrification and anammox across the deep Norwegian trench in the Skagerrak.

Trimmer M, Engström P, Thamdrup B.

Appl Environ Microbiol. 2013 Dec;79(23):7381-9. doi: 10.1128/AEM.01970-13. Epub 2013 Sep 20.


Nitrogen losses in anoxic marine sediments driven by Thioploca-anammox bacterial consortia.

Prokopenko MG, Hirst MB, De Brabandere L, Lawrence DJ, Berelson WM, Granger J, Chang BX, Dawson S, Crane EJ 3rd, Chong L, Thamdrup B, Townsend-Small A, Sigman DM.

Nature. 2013 Aug 8;500(7461):194-8. doi: 10.1038/nature12365.


Competition for inorganic carbon between oxygenic and anoxygenic phototrophs in a hypersaline microbial mat, Guerrero Negro, Mexico.

Finke N, Hoehler TM, Polerecky L, Buehring B, Thamdrup B.

Environ Microbiol. 2013 May;15(5):1532-50. doi: 10.1111/1462-2920.12032. Epub 2013 Jan 24.


Identification of acetate-oxidizing bacteria in a coastal marine surface sediment by RNA-stable isotope probing in anoxic slurries and intact cores.

Vandieken V, Thamdrup B.

FEMS Microbiol Ecol. 2013 May;84(2):373-86. doi: 10.1111/1574-6941.12069. Epub 2013 Jan 24.


Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton.

Stewart FJ, Dalsgaard T, Young CR, Thamdrup B, Revsbech NP, Ulloa O, Canfield DE, Delong EF.

PLoS One. 2012;7(5):e37118. doi: 10.1371/journal.pone.0037118. Epub 2012 May 16.


Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria.

Vandieken V, Pester M, Finke N, Hyun JH, Friedrich MW, Loy A, Thamdrup B.

ISME J. 2012 Nov;6(11):2078-90. doi: 10.1038/ismej.2012.41. Epub 2012 May 10.


A critical assessment of the occurrence and extend of oxygen contamination during anaerobic incubations utilizing commercially available vials.

De Brabandere L, Thamdrup B, Revsbech NP, Foadi R.

J Microbiol Methods. 2012 Jan;88(1):147-54. doi: 10.1016/j.mimet.2011.11.001. Epub 2011 Nov 10.


Construction of STOX oxygen sensors and their application for determination of O2 concentrations in oxygen minimum zones.

Revsbech NP, Thamdrup B, Dalsgaard T, Canfield DE.

Methods Enzymol. 2011;486:325-41. doi: 10.1016/B978-0-12-381294-0.00014-6.


A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast.

Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF, Revsbech NP, Ulloa O.

Science. 2010 Dec 3;330(6009):1375-8. doi: 10.1126/science.1196889. Epub 2010 Nov 11.


Towards a consistent classification scheme for geochemical environments, or, why we wish the term 'suboxic' would go away.

Canfield DE, Thamdrup B.

Geobiology. 2009 Sep;7(4):385-92. doi: 10.1111/j.1472-4669.2009.00214.x.


Geochemistry. New players in an ancient cycle.

Thamdrup B.

Science. 2007 Sep 14;317(5844):1508-9. No abstract available.


Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity.

Schmid MC, Risgaard-Petersen N, van de Vossenberg J, Kuypers MM, Lavik G, Petersen J, Hulth S, Thamdrup B, Canfield D, Dalsgaard T, Rysgaard S, Sejr MK, Strous M, den Camp HJ, Jetten MS.

Environ Microbiol. 2007 Jun;9(6):1476-84.


Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea.

Lam P, Jensen MM, Lavik G, McGinnis DF, Müller B, Schubert CJ, Amann R, Thamdrup B, Kuypers MM.

Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7104-9. Epub 2007 Apr 9.


Effects of specific inhibitors on anammox and denitrification in marine sediments.

Jensen MM, Thamdrup B, Dalsgaard T.

Appl Environ Microbiol. 2007 May;73(10):3151-8. Epub 2007 Mar 16.


Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika).

Schubert CJ, Durisch-Kaiser E, Wehrli B, Thamdrup B, Lam P, Kuypers MM.

Environ Microbiol. 2006 Oct;8(10):1857-63.


Mathematical simulation of the diel O, S, and C biogeochemistry of a hypersaline microbial mat.

Decker KL, Potter CS, Bebout BM, Marais DJ, Carpenter S, Discipulo M, Hoehler TM, Miller SR, Thamdrup B, Turk KA, Visscher PT.

FEMS Microbiol Ecol. 2005 May 1;52(3):377-95. Epub 2005 Jan 12.


Anaerobic ammonium oxidation (anammox) in the marine environment.

Dalsgaard T, Thamdrup B, Canfield DE.

Res Microbiol. 2005 May;156(4):457-64. Epub 2005 Mar 17. Review.


Aquatic geomicrobiology.

Canfield DE, Kristensen E, Thamdrup B.

Adv Mar Biol. 2005;48:1-599. Review. No abstract available.


Anaerobic ammonium oxidation by marine and freshwater planctomycete-like bacteria.

Jetten MS, Sliekers O, Kuypers M, Dalsgaard T, van Niftrik L, Cirpus I, van de Pas-Schoonen K, Lavik G, Thamdrup B, Le Paslier D, Op den Camp HJ, Hulth S, Nielsen LP, Abma W, Third K, Engström P, Kuenen JG, Jørgensen BB, Canfield DE, Sinninghe Damsté JS, Revsbech NP, Fuerst J, Weissenbach J, Wagner M, Schmidt I, Schmid M, Strous M.

Appl Microbiol Biotechnol. 2003 Dec;63(2):107-14. Epub 2003 Sep 4. Review.


N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica.

Dalsgaard T, Canfield DE, Petersen J, Thamdrup B, Acuña-González J.

Nature. 2003 Apr 10;422(6932):606-8.


Calibration of sulfate levels in the archean ocean.

Habicht KS, Gade M, Thamdrup B, Berg P, Canfield DE.

Science. 2002 Dec 20;298(5602):2372-4.

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