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Items: 1 to 50 of 80

1.

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data.

Jungwirth E, Panzitt K, Marschall HU, Wagner M, Thallinger GG.

Stud Health Technol Inform. 2019;260:105-112.

PMID:
31118325
2.

Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival.

Fechter K, Feichtinger J, Prochazka K, Unterluggauer JJ, Pansy K, Steinbauer E, Pichler M, Haybaeck J, Prokesch A, Greinix HT, Beham-Schmid C, Neumeister P, Thallinger GG, Deutsch AJA.

Sci Rep. 2018 Sep 28;8(1):14528. doi: 10.1038/s41598-018-32972-4.

3.

Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients.

Burja B, Feichtinger J, Lakota K, Thallinger GG, Sodin-Semrl S, Kuret T, Rotar Ž, Ješe R, Žigon P, Čučnik S, Mali P, Praprotnik S, Tomšič M, Hočevar A.

Clin Rheumatol. 2019 Feb;38(2):317-329. doi: 10.1007/s10067-018-4240-x. Epub 2018 Aug 24.

PMID:
30143961
4.

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes.

Irisarri I, Singh P, Koblmüller S, Torres-Dowdall J, Henning F, Franchini P, Fischer C, Lemmon AR, Lemmon EM, Thallinger GG, Sturmbauer C, Meyer A.

Nat Commun. 2018 Aug 8;9(1):3159. doi: 10.1038/s41467-018-05479-9.

5.

Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies.

Kuret T, Burja B, Feichtinger J, Thallinger GG, Frank-Bertoncelj M, Lakota K, Žigon P, Sodin-Semrl S, Čučnik S, Tomšič M, Hočevar A.

Clin Rheumatol. 2019 Feb;38(2):307-316. doi: 10.1007/s10067-018-4231-y. Epub 2018 Aug 1.

PMID:
30069799
6.

The mitochondrial genome of the oribatid mite Paraleius leontonychus: new insights into tRNA evolution and phylogenetic relationships in acariform mites.

Schäffer S, Koblmüller S, Klymiuk I, Thallinger GG.

Sci Rep. 2018 May 15;8(1):7558. doi: 10.1038/s41598-018-25981-w.

7.

Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data.

Pucher BM, Zeleznik OA, Thallinger GG.

Brief Bioinform. 2019 Mar 25;20(2):671-681. doi: 10.1093/bib/bby027.

PMID:
29688321
8.

Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells.

Speziali G, Liesinger L, Gindlhuber J, Leopold C, Pucher B, Brandi J, Castagna A, Tomin T, Krenn P, Thallinger GG, Olivieri O, Martinelli N, Kratky D, Schittmayer M, Birner-Gruenberger R, Cecconi D.

J Proteomics. 2018 Jun 15;181:118-130. doi: 10.1016/j.jprot.2018.04.008. Epub 2018 Apr 12.

PMID:
29654920
9.

Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season.

Tomazic PV, Liesinger L, Pucher B, Thallinger GG, Leitner A, Spoerk S, Gerstenberger C, Lang-Loidolt D, Birner-Gruenberger R.

Allergy. 2018 Jul;73(7):1541-1543. doi: 10.1111/all.13444. Epub 2018 Apr 15. No abstract available.

10.

Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells.

Tomin T, Fritz K, Gindlhuber J, Waldherr L, Pucher B, Thallinger GG, Nomura DK, Schittmayer M, Birner-Gruenberger R.

J Proteome Res. 2018 Apr 6;17(4):1415-1425. doi: 10.1021/acs.jproteome.7b00782. Epub 2018 Mar 7.

PMID:
29457907
11.

The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori.

Klymiuk I, Bilgilier C, Stadlmann A, Thannesberger J, Kastner MT, Högenauer C, Püspök A, Biowski-Frotz S, Schrutka-Kölbl C, Thallinger GG, Steininger C.

Front Microbiol. 2017 Dec 14;8:2508. doi: 10.3389/fmicb.2017.02508. eCollection 2017.

12.

Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors.

Vogl T, Sturmberger L, Fauland PC, Hyden P, Fischer JE, Schmid C, Thallinger GG, Geier M, Glieder A.

Biotechnol Bioeng. 2018 Apr;115(4):1037-1050. doi: 10.1002/bit.26529. Epub 2018 Jan 29.

PMID:
29280481
13.

A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods.

Burja B, Kuret T, Sodin-Semrl S, Lakota K, Rotar Ž, Ješe R, Mrak-Poljšak K, Žigon P, Thallinger GG, Feichtinger J, Čučnik S, Tomšič M, Praprotnik S, Hočevar A.

Autoimmun Rev. 2018 Feb;17(2):188-194. doi: 10.1016/j.autrev.2017.11.022. Epub 2017 Nov 28. Review.

PMID:
29196244
14.

Deciphering lipid structures based on platform-independent decision rules.

Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O, Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC, Thallinger GG.

Nat Methods. 2017 Dec;14(12):1171-1174. doi: 10.1038/nmeth.4470. Epub 2017 Oct 23.

15.

MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics.

Bueschl C, Kluger B, Neumann NKN, Doppler M, Maschietto V, Thallinger GG, Meng-Reiterer J, Krska R, Schuhmacher R.

Anal Chem. 2017 Sep 5;89(17):9518-9526. doi: 10.1021/acs.analchem.7b02518. Epub 2017 Aug 22.

16.

Erratum: Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.

Lanfranchi E, Pavkov-Keller T, Koehler EM, Diepold M, Steiner K, Darnhofer B, Hartler J, Bergh TVD, Joosten HJ, Gruber-Khadjawi M, Thallinger GG, Birner-Gruenberger R, Gruber K, Winkler M, Glieder A.

Sci Rep. 2017 May 26;7:46834. doi: 10.1038/srep46834.

17.

Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.

Lanfranchi E, Pavkov-Keller T, Koehler EM, Diepold M, Steiner K, Darnhofer B, Hartler J, Van Den Bergh T, Joosten HJ, Gruber-Khadjawi M, Thallinger GG, Birner-Gruenberger R, Gruber K, Winkler M, Glieder A.

Sci Rep. 2017 May 3;7:46738. doi: 10.1038/srep46738. Erratum in: Sci Rep. 2017 May 26;7:46834.

18.

Critical Issues in Mycobiota Analysis.

Halwachs B, Madhusudhan N, Krause R, Nilsson RH, Moissl-Eichinger C, Högenauer C, Thallinger GG, Gorkiewicz G.

Front Microbiol. 2017 Feb 14;8:180. doi: 10.3389/fmicb.2017.00180. eCollection 2017.

19.

NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes.

Deutsch AJA, Rinner B, Pichler M, Prochazka K, Pansy K, Bischof M, Fechter K, Hatzl S, Feichtinger J, Wenzl K, Frisch MT, Stiegelbauer V, Prokesch A, Krogsdam A, Sill H, Thallinger GG, Greinix HT, Wang C, Beham-Schmid C, Neumeister P.

Cancer Res. 2017 May 1;77(9):2375-2386. doi: 10.1158/0008-5472.CAN-16-2320. Epub 2017 Mar 1.

20.

Molecular Profiling of Phagocytic Immune Cells in Anopheles gambiae Reveals Integral Roles for Hemocytes in Mosquito Innate Immunity.

Smith RC, King JG, Tao D, Zeleznik OA, Brando C, Thallinger GG, Dinglasan RR.

Mol Cell Proteomics. 2016 Nov;15(11):3373-3387. Epub 2016 Sep 13.

21.

Inferring expressed genes by whole-genome sequencing of plasma DNA.

Ulz P, Thallinger GG, Auer M, Graf R, Kashofer K, Jahn SW, Abete L, Pristauz G, Petru E, Geigl JB, Heitzer E, Speicher MR.

Nat Genet. 2016 Oct;48(10):1273-8. doi: 10.1038/ng.3648. Epub 2016 Aug 29.

PMID:
27571261
22.

Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function.

Valli M, Tatto NE, Peymann A, Gruber C, Landes N, Ekker H, Thallinger GG, Mattanovich D, Gasser B, Graf AB.

FEMS Yeast Res. 2016 Sep;16(6). pii: fow051. doi: 10.1093/femsyr/fow051. Epub 2016 Jul 6.

PMID:
27388471
23.

Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients.

Krause R, Halwachs B, Thallinger GG, Klymiuk I, Gorkiewicz G, Hoenigl M, Prattes J, Valentin T, Heidrich K, Buzina W, Salzer HJ, Rabensteiner J, Prüller F, Raggam RB, Meinitzer A, Moissl-Eichinger C, Högenauer C, Quehenberger F, Kashofer K, Zollner-Schwetz I.

PLoS One. 2016 May 20;11(5):e0155033. doi: 10.1371/journal.pone.0155033. eCollection 2016.

24.

Translin and Trax differentially regulate telomere-associated transcript homeostasis.

Gomez-Escobar N, Almobadel N, Alzahrani O, Feichtinger J, Planells-Palop V, Alshehri Z, Thallinger GG, Wakeman JA, McFarlane RJ.

Oncotarget. 2016 Jun 7;7(23):33809-20. doi: 10.18632/oncotarget.9278.

25.

Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time.

Feichtinger J, Hernández I, Fischer C, Hanscho M, Auer N, Hackl M, Jadhav V, Baumann M, Krempl PM, Schmidl C, Farlik M, Schuster M, Merkel A, Sommer A, Heath S, Rico D, Bock C, Thallinger GG, Borth N.

Biotechnol Bioeng. 2016 Oct;113(10):2241-53. doi: 10.1002/bit.25990. Epub 2016 Apr 29.

26.

Dimension reduction techniques for the integrative analysis of multi-omics data.

Meng C, Zeleznik OA, Thallinger GG, Kuster B, Gholami AM, Culhane AC.

Brief Bioinform. 2016 Jul;17(4):628-41. doi: 10.1093/bib/bbv108. Epub 2016 Mar 11. Review.

27.

A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris.

Vogl T, Sturmberger L, Kickenweiz T, Wasmayer R, Schmid C, Hatzl AM, Gerstmann MA, Pitzer J, Wagner M, Thallinger GG, Geier M, Glieder A.

ACS Synth Biol. 2016 Feb 19;5(2):172-86. doi: 10.1021/acssynbio.5b00199. Epub 2015 Dec 11.

PMID:
26592304
28.

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus.

Linke R, Thallinger GG, Haarmann T, Eidner J, Schreiter M, Lorenz P, Seiboth B, Kubicek CP.

Biotechnol Biofuels. 2015 Sep 24;8:155. doi: 10.1186/s13068-015-0311-2. eCollection 2015.

29.

ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6.

Eichmann TO, Grumet L, Taschler U, Hartler J, Heier C, Woblistin A, Pajed L, Kollroser M, Rechberger G, Thallinger GG, Zechner R, Haemmerle G, Zimmermann R, Lass A.

J Lipid Res. 2015 Oct;56(10):1972-84. doi: 10.1194/jlr.M062372. Epub 2015 Aug 31.

30.

miR-199a and miR-497 Are Associated with Better Overall Survival due to Increased Chemosensitivity in Diffuse Large B-Cell Lymphoma Patients.

Troppan K, Wenzl K, Pichler M, Pursche B, Schwarzenbacher D, Feichtinger J, Thallinger GG, Beham-Schmid C, Neumeister P, Deutsch A.

Int J Mol Sci. 2015 Aug 5;16(8):18077-95. doi: 10.3390/ijms160818077.

31.

Finished Genome Sequence of Escherichia coli K-12 Strain HMS174 (ATCC 47011).

Mairhofer J, Krempl PM, Thallinger GG, Striedner G.

Genome Announc. 2014 Nov 20;2(6). pii: e00975-14. doi: 10.1128/genomeA.00975-14.

32.

Finished Genome Sequence of the Laboratory Strain Escherichia coli K-12 RV308 (ATCC 31608).

Krempl PM, Mairhofer J, Striedner G, Thallinger GG.

Genome Announc. 2014 Nov 20;2(6). pii: e00971-14. doi: 10.1128/genomeA.00971-14.

33.

Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS.

Kluger B, Bueschl C, Neumann N, Stückler R, Doppler M, Chassy AW, Waterhouse AL, Rechthaler J, Kampleitner N, Thallinger GG, Adam G, Krska R, Schuhmacher R.

Anal Chem. 2014 Dec 2;86(23):11533-7. doi: 10.1021/ac503290j. Epub 2014 Nov 17.

34.

The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions.

Bragina A, Oberauner-Wappis L, Zachow C, Halwachs B, Thallinger GG, Müller H, Berg G.

Mol Ecol. 2014 Sep;23(18):4498-510. doi: 10.1111/mec.12885. Epub 2014 Sep 8.

PMID:
25113243
35.

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research.

Bueschl C, Kluger B, Lemmens M, Adam G, Wiesenberger G, Maschietto V, Marocco A, Strauss J, Bödi S, Thallinger GG, Krska R, Schuhmacher R.

Metabolomics. 2014;10(4):754-769. doi: 10.1007/s11306-013-0611-0. Epub 2013 Dec 4.

36.

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data.

Tomescu OA, Mattanovich D, Thallinger GG.

BMC Syst Biol. 2014;8 Suppl 2:S4. doi: 10.1186/1752-0509-8-S2-S4. Epub 2014 Mar 13.

37.

Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics.

Schellenberg JJ, Verbeke TJ, McQueen P, Krokhin OV, Zhang X, Alvare G, Fristensky B, Thallinger GG, Henrissat B, Wilkins JA, Levin DB, Sparling R.

BMC Genomics. 2014 Jul 7;15:567. doi: 10.1186/1471-2164-15-567.

38.

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.

Griss J, Jones AR, Sachsenberg T, Walzer M, Gatto L, Hartler J, Thallinger GG, Salek RM, Steinbeck C, Neuhauser N, Cox J, Neumann S, Fan J, Reisinger F, Xu QW, Del Toro N, Pérez-Riverol Y, Ghali F, Bandeira N, Xenarios I, Kohlbacher O, Vizcaíno JA, Hermjakob H.

Mol Cell Proteomics. 2014 Oct;13(10):2765-75. doi: 10.1074/mcp.O113.036681. Epub 2014 Jun 30.

39.

Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria.

Alavi P, Starcher MR, Thallinger GG, Zachow C, Müller H, Berg G.

BMC Genomics. 2014 Jun 18;15:482. doi: 10.1186/1471-2164-15-482.

40.

A physicians' wish list for the clinical application of intestinal metagenomics.

Klymiuk I, Högenauer C, Halwachs B, Thallinger GG, Fricke WF, Steininger C.

PLoS Med. 2014 Apr 15;11(4):e1001627. doi: 10.1371/journal.pmed.1001627. eCollection 2014 Apr.

41.

Peroxidase gene discovery from the horseradish transcriptome.

Näätsaari L, Krainer FW, Schubert M, Glieder A, Thallinger GG.

BMC Genomics. 2014 Mar 24;15:227. doi: 10.1186/1471-2164-15-227.

42.

Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression.

Vogl T, Thallinger GG, Zellnig G, Drew D, Cregg JM, Glieder A, Freigassner M.

N Biotechnol. 2014 Dec 25;31(6):538-52. doi: 10.1016/j.nbt.2014.02.009. Epub 2014 Mar 2.

PMID:
24594271
43.

NR4A1-mediated apoptosis suppresses lymphomagenesis and is associated with a favorable cancer-specific survival in patients with aggressive B-cell lymphomas.

Deutsch AJ, Rinner B, Wenzl K, Pichler M, Troppan K, Steinbauer E, Schwarzenbacher D, Reitter S, Feichtinger J, Tierling S, Prokesch A, Scheideler M, Krogsdam A, Thallinger GG, Schaider H, Beham-Schmid C, Neumeister P.

Blood. 2014 Apr 10;123(15):2367-77. doi: 10.1182/blood-2013-08-518878. Epub 2014 Feb 19.

44.

Resolving tumor heterogeneity: genes involved in chordoma cell development identified by low-template analysis of morphologically distinct cells.

El-Heliebi A, Kroneis T, Wagner K, Meditz K, Kolb D, Feichtinger J, Thallinger GG, Quehenberger F, Liegl-Atzwanger B, Rinner B.

PLoS One. 2014 Feb 4;9(2):e87663. doi: 10.1371/journal.pone.0087663. eCollection 2014.

45.

Comparative genome analysis of Campylobacter fetus subspecies revealed horizontally acquired genetic elements important for virulence and niche specificity.

Kienesberger S, Sprenger H, Wolfgruber S, Halwachs B, Thallinger GG, Perez-Perez GI, Blaser MJ, Zechner EL, Gorkiewicz G.

PLoS One. 2014 Jan 9;9(1):e85491. doi: 10.1371/journal.pone.0085491. eCollection 2014.

46.

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models.

Hartler J, Köfeler HC, Trötzmüller M, Thallinger GG, Spener F.

Sci Data. 2014 Dec 23;1:140051. doi: 10.1038/sdata.2014.51. eCollection 2014.

47.

Chordoma Low-Template Microarray Analysis.

Feichtinger J, El-Heliebi A, Kroneis T, Wagner K, Liegl-Atzwanger B, Leithner A, Thallinger GG, Rinner B.

Biomed Tech (Berl). 2013 Aug;58 Suppl 1. pii: /j/bmte.2013.58.issue-s1-M/bmt-2013-4310/bmt-2013-4310.xml. doi: 10.1515/bmt-2013-4310. Epub 2013 Sep 7. No abstract available.

PMID:
24043026
48.

Integrative Analysis of -Omics Data: A Method Comparison.

Tomescu OA, Mattanovich D, Thallinger GG.

Biomed Tech (Berl). 2013 Aug;58 Suppl 1. pii: /j/bmte.2013.58.issue-s1-M/bmt-2013-4311/bmt-2013-4311.xml. doi: 10.1515/bmt-2013-4311. Epub 2013 Sep 7. No abstract available.

PMID:
24043020
49.

High-Troughput Characterization and Comparison of Microbial Communities.

Halwachs B, Höftberger J, Stocker G, Snajder R, Gorkiewicz G, Thallinger GG.

Biomed Tech (Berl). 2013 Aug;58 Suppl 1. pii: /j/bmte.2013.58.issue-s1-M/bmt-2013-4312/bmt-2013-4312.xml. doi: 10.1515/bmt-2013-4312. Epub 2013 Sep 7. No abstract available.

PMID:
24042957
50.

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes.

Fischer C, Koblmüller S, Gülly C, Schlötterer C, Sturmbauer C, Thallinger GG.

PLoS One. 2013 Jun 24;8(6):e67048. doi: 10.1371/journal.pone.0067048. Print 2013.

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