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Items: 34

1.

Gene buddies: linked balanced polymorphisms reinforce each other even in the absence of epistasis.

Tennessen JA.

PeerJ. 2018 Jun 28;6:e5110. doi: 10.7717/peerj.5110. eCollection 2018.

2.

Rapid genetic adaptation to a novel environment despite a genome-wide reduction in genetic diversity.

Willoughby JR, Harder AM, Tennessen JA, Scribner KT, Christie MR.

Mol Ecol. 2018 May 26. doi: 10.1111/mec.14726. [Epub ahead of print]

PMID:
29802799
3.

Plastid genomes reveal recurrent formation of allopolyploid Fragaria.

Dillenberger MS, Wei N, Tennessen JA, Ashman TL, Liston A.

Am J Bot. 2018 May;105(5):862-874. doi: 10.1002/ajb2.1085. Epub 2018 May 24.

PMID:
29797560
4.

Allelic Variation in a Single Genomic Region Alters the Microbiome of the Snail Biomphalaria glabrata.

Allan ERO, Tennessen JA, Sharpton TJ, Blouin MS.

J Hered. 2018 Jun 27;109(5):604-609. doi: 10.1093/jhered/esy014.

PMID:
29566237
5.

Genetic Mapping and Phylogenetic Analysis Reveal Intraspecific Variation in Sex Chromosomes of the Virginian Strawberry.

Wei N, Govindarajulu R, Tennessen JA, Liston A, Ashman TL.

J Hered. 2017 Oct 30;108(7):731-739. doi: 10.1093/jhered/esx077.

PMID:
29036451
6.

Genotyping-by-sequencing enables linkage mapping in three octoploid cultivated strawberry families.

Vining KJ, Salinas N, Tennessen JA, Zurn JD, Sargent DJ, Hancock J, Bassil NV.

PeerJ. 2017 Aug 30;5:e3731. doi: 10.7717/peerj.3731. eCollection 2017.

7.

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, Di Stefano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TAL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 Aug 23;8:16153. doi: 10.1038/ncomms16153.

8.

Present-day sympatry belies the evolutionary origin of a high-order polyploid.

Wei N, Tennessen JA, Liston A, Ashman TL.

New Phytol. 2017 Oct;216(1):279-290. doi: 10.1111/nph.14711. Epub 2017 Aug 3.

9.

A Targeted Capture Linkage Map Anchors the Genome of the Schistosomiasis Vector Snail, Biomphalaria glabrata.

Tennessen JA, Bollmann SR, Blouin MS.

G3 (Bethesda). 2017 Jul 5;7(7):2353-2361. doi: 10.1534/g3.117.041319.

10.

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, di Stephano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 May 16;8:15451. doi: 10.1038/ncomms15451. Erratum in: Nat Commun. 2017 Aug 23;8:16153.

11.

Development of new microsatellites for the hookworm Ancylostoma caninum and analysis of genetic diversity in Brazilian populations.

Rabelo ÉML, Miranda RRC, Furtado LFV, Redondo RAF, Tennessen JA, Blouin MS.

Infect Genet Evol. 2017 Jul;51:24-27. doi: 10.1016/j.meegid.2017.03.008. Epub 2017 Mar 10.

PMID:
28288926
12.

Schistosome infectivity in the snail, Biomphalaria glabrata, is partially dependent on the expression of Grctm6, a Guadeloupe Resistance Complex protein.

Allan ER, Tennessen JA, Bollmann SR, Hanington PC, Bayne CJ, Blouin MS.

PLoS Negl Trop Dis. 2017 Feb 3;11(2):e0005362. doi: 10.1371/journal.pntd.0005362. eCollection 2017 Feb.

13.

Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome.

Syring JV, Tennessen JA, Jennings TN, Wegrzyn J, Scelfo-Dalbey C, Cronn R.

Front Plant Sci. 2016 Apr 21;7:484. doi: 10.3389/fpls.2016.00484. eCollection 2016.

14.

Homomorphic ZW chromosomes in a wild strawberry show distinctive recombination heterogeneity but a small sex-determining region.

Tennessen JA, Govindarajulu R, Liston A, Ashman TL.

New Phytol. 2016 Sep;211(4):1412-23. doi: 10.1111/nph.13983. Epub 2016 Apr 22.

15.

Multilocus Sex Determination Revealed in Two Populations of Gynodioecious Wild Strawberry, Fragaria vesca subsp. bracteata.

Ashman TL, Tennessen JA, Dalton RM, Govindarajulu R, Koski MH, Liston A.

G3 (Bethesda). 2015 Oct 19;5(12):2759-73. doi: 10.1534/g3.115.023358.

16.

Genome-Wide Scan and Test of Candidate Genes in the Snail Biomphalaria glabrata Reveal New Locus Influencing Resistance to Schistosoma mansoni.

Tennessen JA, Bonner KM, Bollmann SR, Johnstun JA, Yeh JY, Marine M, Tavalire HF, Bayne CJ, Blouin MS.

PLoS Negl Trop Dis. 2015 Sep 15;9(9):e0004077. doi: 10.1371/journal.pntd.0004077. eCollection 2015.

17.

Comparison of nuclear, plastid, and mitochondrial phylogenies and the origin of wild octoploid strawberry species.

Govindarajulu R, Parks M, Tennessen JA, Liston A, Ashman TL.

Am J Bot. 2015 Apr;102(4):544-54. doi: 10.3732/ajb.1500026. Epub 2015 Mar 23.

18.

Hyperdiverse gene cluster in snail host conveys resistance to human schistosome parasites.

Tennessen JA, Théron A, Marine M, Yeh JY, Rognon A, Blouin MS.

PLoS Genet. 2015 Mar 16;11(3):e1005067. doi: 10.1371/journal.pgen.1005067. eCollection 2015 Mar.

19.

Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps.

Tennessen JA, Govindarajulu R, Ashman TL, Liston A.

Genome Biol Evol. 2014 Dec 4;6(12):3295-313. doi: 10.1093/gbe/evu261.

20.
21.

Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching.

Christie MR, Tennessen JA, Blouin MS.

Bioinformatics. 2013 Mar 15;29(6):725-32. doi: 10.1093/bioinformatics/btt039. Epub 2013 Jan 30.

PMID:
23365409
22.

Evolution and functional impact of rare coding variation from deep sequencing of human exomes.

Tennessen JA, Bigham AW, O'Connor TD, Fu W, Kenny EE, Gravel S, McGee S, Do R, Liu X, Jun G, Kang HM, Jordan D, Leal SM, Gabriel S, Rieder MJ, Abecasis G, Altshuler D, Nickerson DA, Boerwinkle E, Sunyaev S, Bustamante CD, Bamshad MJ, Akey JM; Broad GO; Seattle GO; NHLBI Exome Sequencing Project.

Science. 2012 Jul 6;337(6090):64-9. doi: 10.1126/science.1219240. Epub 2012 May 17.

23.

The promise and limitations of population exomics for human evolution studies.

Tennessen JA, O'Connor TD, Bamshad MJ, Akey JM.

Genome Biol. 2011 Sep 14;12(9):127. doi: 10.1186/gb-2011-12-9-127.

24.

Parallel adaptive divergence among geographically diverse human populations.

Tennessen JA, Akey JM.

PLoS Genet. 2011 Jun;7(6):e1002127. doi: 10.1371/journal.pgen.1002127. Epub 2011 Jun 16.

25.

Signatures of positive selection apparent in a small sample of human exomes.

Tennessen JA, Madeoy J, Akey JM.

Genome Res. 2010 Oct;20(10):1327-34. doi: 10.1101/gr.106161.110. Epub 2010 Aug 6.

26.

A revised leopard frog phylogeny allows a more detailed examination of adaptive evolution at ranatuerin-2 antimicrobial peptide loci.

Tennessen JA, Blouin MS.

Immunogenetics. 2010 May;62(5):333-43. doi: 10.1007/s00251-010-0430-7. Epub 2010 Feb 24.

PMID:
20179920
27.

Variations in the expressed antimicrobial peptide repertoire of northern leopard frog (Rana pipiens) populations suggest intraspecies differences in resistance to pathogens.

Tennessen JA, Woodhams DC, Chaurand P, Reinert LK, Billheimer D, Shyr Y, Caprioli RM, Blouin MS, Rollins-Smith LA.

Dev Comp Immunol. 2009 Dec;33(12):1247-57. doi: 10.1016/j.dci.2009.07.004. Epub 2009 Aug 3.

28.

Balancing selection at a frog antimicrobial peptide locus: fluctuating immune effector alleles?

Tennessen JA, Blouin MS.

Mol Biol Evol. 2008 Dec;25(12):2669-80. doi: 10.1093/molbev/msn208. Epub 2008 Sep 17.

29.

Positive selection drives a correlation between non-synonymous/synonymous divergence and functional divergence.

Tennessen JA.

Bioinformatics. 2008 Jun 15;24(12):1421-5. doi: 10.1093/bioinformatics/btn205. Epub 2008 Apr 28.

PMID:
18443017
30.

Mitochondrial DNA variation of the dog hookworm Ancylostoma caninum in Brazilian populations.

Miranda RR, Tennessen JA, Blouin MS, Rabelo EM.

Vet Parasitol. 2008 Jan 25;151(1):61-7. Epub 2007 Nov 13.

PMID:
17997042
31.

Selection for antimicrobial peptide diversity in frogs leads to gene duplication and low allelic variation.

Tennessen JA, Blouin MS.

J Mol Evol. 2007 Nov;65(5):605-15. Epub 2007 Oct 16.

PMID:
17938991
32.
33.

Enhanced synonymous site divergence in positively selected vertebrate antimicrobial peptide genes.

Tennessen JA.

J Mol Evol. 2005 Oct;61(4):445-55. Epub 2005 Sep 12.

PMID:
16155748
34.

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