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Items: 1 to 50 of 66

1.

Ceftriaxone and cefotaxime have similar effects on the intestinal microbiota in human volunteers treated by standard doses regimens.

Burdet C, Grall N, Linard M, Bridier-Nahmias A, Benhayoun M, Bourabha K, Magnan M, Clermont O, d'Humières C, Tenaillon O, Denamur E, Massias L, Tubiana S, Alavoine L, Andremont A, Mentré F, Duval X; CEREMI group.

Antimicrob Agents Chemother. 2019 Apr 1. pii: AAC.02244-18. doi: 10.1128/AAC.02244-18. [Epub ahead of print]

PMID:
30936104
2.

Successful Treatment of Bacteremia Due to NDM-1-Producing Morganella morganii with Aztreonam and Ceftazidime-Avibactam Combination in a Pediatric Patient with Hematologic Malignancy.

Hobson CA, Bonacorsi S, Fahd M, Baruchel A, Cointe A, Poey N, Jacquier H, Doit C, Monjault A, Tenaillon O, Birgy A.

Antimicrob Agents Chemother. 2019 Jan 29;63(2). pii: e02463-18. doi: 10.1128/AAC.02463-18. Print 2019 Feb. No abstract available.

PMID:
30530600
3.

Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins.

Branger C, Ledda A, Billard-Pomares T, Doublet B, Fouteau S, Barbe V, Roche D, Cruveiller S, Médigue C, Castellanos M, Decré D, Drieux-Rouze L, Clermont O, Glodt J, Tenaillon O, Cloeckaert A, Arlet G, Denamur E.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000203. Epub 2018 Aug 6.

4.

Experimental evolution heals the scars of genome-scale recoding.

Tenaillon O.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):2853-2855. doi: 10.1073/pnas.1801699115. Epub 2018 Mar 7. No abstract available.

5.

Evolution of a Dominant Natural Isolate of Escherichia coli in the Human Gut over the Course of a Year Suggests a Neutral Evolution with Reduced Effective Population Size.

Ghalayini M, Launay A, Bridier-Nahmias A, Clermont O, Denamur E, Lescat M, Tenaillon O.

Appl Environ Microbiol. 2018 Mar 1;84(6). pii: e02377-17. doi: 10.1128/AEM.02377-17. Print 2018 Mar 15.

6.

Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria.

Couce A, Caudwell LV, Feinauer C, Hindré T, Feugeas JP, Weigt M, Lenski RE, Schneider D, Tenaillon O.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E9026-E9035. doi: 10.1073/pnas.1705887114. Epub 2017 Oct 10.

7.

Accumulation of Deleterious Mutations During Bacterial Range Expansions.

Bosshard L, Dupanloup I, Tenaillon O, Bruggmann R, Ackermann M, Peischl S, Excoffier L.

Genetics. 2017 Oct;207(2):669-684. doi: 10.1534/genetics.117.300144. Epub 2017 Aug 16.

8.

[Molecular epidemiology and kinetics of early Escherichia coli urinary tract infections in kidney transplant recipients].

Tashk P, Lecronier M, Clermont O, Renvoisé A, Aubry A, Barrou B, Hertig A, Lescat M, Tenaillon O, Denamur E, Tourret J.

Nephrol Ther. 2017 Jun;13(4):236-244. doi: 10.1016/j.nephro.2016.10.008. Epub 2017 May 30. French.

PMID:
28576434
9.

Molecular epidemiology of penicillinase-producing Neisseria gonorrhoeae isolates in France.

Micaëlo M, Goubard A, La Ruche G, Denamur E, Tenaillon O, Cambau E, Jacquier H, Bercot B.

Clin Microbiol Infect. 2017 Dec;23(12):968-973. doi: 10.1016/j.cmi.2017.04.010. Epub 2017 Apr 13.

10.

Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut.

Lescat M, Launay A, Ghalayini M, Magnan M, Glodt J, Pintard C, Dion S, Denamur E, Tenaillon O.

Mol Ecol. 2017 Apr;26(7):1802-1817. doi: 10.1111/mec.13851. Epub 2016 Oct 18.

11.

Tempo and mode of genome evolution in a 50,000-generation experiment.

Tenaillon O, Barrick JE, Ribeck N, Deatherage DE, Blanchard JL, Dasgupta A, Wu GC, Wielgoss S, Cruveiller S, Médigue C, Schneider D, Lenski RE.

Nature. 2016 Aug 11;536(7615):165-70. Epub 2016 Aug 1.

12.

Links between Transcription, Environmental Adaptation and Gene Variability in Escherichia coli: Correlations between Gene Expression and Gene Variability Reflect Growth Efficiencies.

Feugeas JP, Tourret J, Launay A, Bouvet O, Hoede C, Denamur E, Tenaillon O.

Mol Biol Evol. 2016 Oct;33(10):2515-29. doi: 10.1093/molbev/msw105. Epub 2016 Jun 28.

PMID:
27352853
13.

Emergence of Antimicrobial-Resistant Escherichia coli of Animal Origin Spreading in Humans.

Skurnik D, Clermont O, Guillard T, Launay A, Danilchanka O, Pons S, Diancourt L, Lebreton F, Kadlec K, Roux D, Jiang D, Dion S, Aschard H, Denamur M, Cywes-Bentley C, Schwarz S, Tenaillon O, Andremont A, Picard B, Mekalanos J, Brisse S, Denamur E.

Mol Biol Evol. 2016 Apr;33(4):898-914. doi: 10.1093/molbev/msv280. Epub 2015 Nov 26.

14.

First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes.

Rodríguez-Verdugo A, Tenaillon O, Gaut BS.

Mol Biol Evol. 2016 Jan;33(1):25-39. doi: 10.1093/molbev/msv228. Epub 2015 Oct 24.

15.

Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1.

Figliuzzi M, Jacquier H, Schug A, Tenaillon O, Weigt M.

Mol Biol Evol. 2016 Jan;33(1):268-80. doi: 10.1093/molbev/msv211. Epub 2015 Oct 6.

16.

Elucidating the molecular architecture of adaptation via evolve and resequence experiments.

Long A, Liti G, Luptak A, Tenaillon O.

Nat Rev Genet. 2015 Oct;16(10):567-82. doi: 10.1038/nrg3937. Epub 2015 Sep 8. Review.

17.

The rule of declining adaptability in microbial evolution experiments.

Couce A, Tenaillon OA.

Front Genet. 2015 Mar 11;6:99. doi: 10.3389/fgene.2015.00099. eCollection 2015.

18.

High Recombinant Frequency in Extraintestinal Pathogenic Escherichia coli Strains.

Rodríguez-Beltrán J, Tourret J, Tenaillon O, López E, Bourdelier E, Costas C, Matic I, Denamur E, Blázquez J.

Mol Biol Evol. 2015 Jul;32(7):1708-16. doi: 10.1093/molbev/msv072. Epub 2015 Mar 24.

PMID:
25804522
19.

The Utility of Fisher's Geometric Model in Evolutionary Genetics.

Tenaillon O.

Annu Rev Ecol Evol Syst. 2014 Nov 1;45:179-201.

20.

Properties of selected mutations and genotypic landscapes under Fisher's geometric model.

Blanquart F, Achaz G, Bataillon T, Tenaillon O.

Evolution. 2014 Dec;68(12):3537-54. doi: 10.1111/evo.12545. Epub 2014 Nov 17.

21.

The conserved nhaAR operon is drastically divergent between B2 and non-B2 Escherichia coli and is involved in extra-intestinal virulence.

Lescat M, Reibel F, Pintard C, Dion S, Glodt J, Gateau C, Launay A, Ledda A, Cruveiller S, Tourret J, Tenaillon O.

PLoS One. 2014 Sep 30;9(9):e108738. doi: 10.1371/journal.pone.0108738. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0118729. Cruvellier, Stephane [corrected to Cruveiller, Stephane].

22.

Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli.

Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D.

MBio. 2014 Sep 9;5(5):e01377-14. doi: 10.1128/mBio.01377-14.

23.

Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli.

Plucain J, Hindré T, Le Gac M, Tenaillon O, Cruveiller S, Médigue C, Leiby N, Harcombe WR, Marx CJ, Lenski RE, Schneider D.

Science. 2014 Mar 21;343(6177):1366-9. doi: 10.1126/science.1248688. Epub 2014 Mar 6.

PMID:
24603152
24.

The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing.

Achaz G, Rodriguez-Verdugo A, Gaut BS, Tenaillon O.

Adv Exp Med Biol. 2014;781:211-31. doi: 10.1007/978-94-007-7347-9_11.

PMID:
24277302
25.

Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages.

Díaz-Muñoz SL, Tenaillon O, Goldhill D, Brao K, Turner PE, Chao L.

BMC Evol Biol. 2013 Sep 24;13:206. doi: 10.1186/1471-2148-13-206.

26.

Capturing the mutational landscape of the beta-lactamase TEM-1.

Jacquier H, Birgy A, Le Nagard H, Mechulam Y, Schmitt E, Glodt J, Bercot B, Petit E, Poulain J, Barnaud G, Gros PA, Tenaillon O.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13067-72. doi: 10.1073/pnas.1215206110. Epub 2013 Jul 22.

27.

A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli.

Maharjan RP, Gaffé J, Plucain J, Schliep M, Wang L, Feng L, Tenaillon O, Ferenci T, Schneider D.

BMC Genomics. 2013 Jul 3;14:441. doi: 10.1186/1471-2164-14-441.

28.

Fitness, stress resistance, and extraintestinal virulence in Escherichia coli.

Bleibtreu A, Gros PA, Laouénan C, Clermont O, Le Nagard H, Picard B, Tenaillon O, Denamur E.

Infect Immun. 2013 Aug;81(8):2733-42. doi: 10.1128/IAI.01329-12. Epub 2013 May 20.

29.

Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress.

Rodríguez-Verdugo A, Gaut BS, Tenaillon O.

BMC Evol Biol. 2013 Feb 22;13:50. doi: 10.1186/1471-2148-13-50.

30.

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.

Wielgoss S, Barrick JE, Tenaillon O, Wiser MJ, Dittmar WJ, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):222-7. doi: 10.1073/pnas.1219574110. Epub 2012 Dec 17.

31.

The molecular diversity of adaptive convergence.

Tenaillon O, Rodríguez-Verdugo A, Gaut RL, McDonald P, Bennett AF, Long AD, Gaut BS.

Science. 2012 Jan 27;335(6067):457-61. doi: 10.1126/science.1212986.

32.

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli.

Wielgoss S, Barrick JE, Tenaillon O, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D.

G3 (Bethesda). 2011 Aug 1;1(3):183-186.

33.

The emergence of complexity and restricted pleiotropy in adapting networks.

Le Nagard H, Chao L, Tenaillon O.

BMC Evol Biol. 2011 Nov 7;11:326. doi: 10.1186/1471-2148-11-326.

34.

How Fitch-Margoliash Algorithm can Benefit from Multi Dimensional Scaling.

Lespinats S, Grando D, Maréchal E, Hakimi MA, Tenaillon O, Bastien O.

Evol Bioinform Online. 2011;7:61-85. doi: 10.4137/EBO.S7048. Epub 2011 Jun 7.

35.

Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain.

Billard-Pomares T, Tenaillon O, Le Nagard H, Rouy Z, Cruveiller S, Médigue C, Arlet G, Denamur E, Branger C.

Antimicrob Agents Chemother. 2011 Mar;55(3):1270-3. doi: 10.1128/AAC.01108-10. Epub 2010 Dec 20.

36.

The interaction between a non-pathogenic and a pathogenic strain synergistically enhances extra-intestinal virulence in Escherichia coli.

Tourret J, Aloulou M, Garry L, Tenaillon O, Dion S, Ryffel B, Monteiro RC, Denamur E.

Microbiology. 2011 Mar;157(Pt 3):774-85. doi: 10.1099/mic.0.037416-0. Epub 2010 Nov 11.

PMID:
21071495
37.

Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections.

Levert M, Zamfir O, Clermont O, Bouvet O, Lespinats S, Hipeaux MC, Branger C, Picard B, Saint-Ruf C, Norel F, Balliau T, Zivy M, Le Nagard H, Cruveiller S, Chane-Woon-Ming B, Nilsson S, Gudelj I, Phan K, Ferenci T, Tenaillon O, Denamur E.

PLoS Pathog. 2010 Sep 30;6(9):e1001125. doi: 10.1371/journal.ppat.1001125. Erratum in: PLoS Pathog. 2011 Jun;7(6). doi:10.1371/annotation/700dcb3b-3475-49a1-9064-d9d070cda7be. Cruvellier, Stéphane[corrected to Cruveiller, Stéphane].

38.

Bacteriophage PhiX174's ecological niche and the flexibility of its Escherichia coli lipopolysaccharide receptor.

Michel A, Clermont O, Denamur E, Tenaillon O.

Appl Environ Microbiol. 2010 Nov;76(21):7310-3. doi: 10.1128/AEM.02721-09. Epub 2010 Sep 10.

39.

The population genetics of commensal Escherichia coli.

Tenaillon O, Skurnik D, Picard B, Denamur E.

Nat Rev Microbiol. 2010 Mar;8(3):207-17. doi: 10.1038/nrmicro2298. Review.

PMID:
20157339
40.

A unique virus release mechanism in the Archaea.

Bize A, Karlsson EA, Ekefjärd K, Quax TE, Pina M, Prevost MC, Forterre P, Tenaillon O, Bernander R, Prangishvili D.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11306-11. doi: 10.1073/pnas.0901238106. Epub 2009 Jun 19.

41.

A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A.

Lescat M, Calteau A, Hoede C, Barbe V, Touchon M, Rocha E, Tenaillon O, Médigue C, Johnson JR, Denamur E.

Antimicrob Agents Chemother. 2009 Jun;53(6):2283-8. doi: 10.1128/AAC.00123-09. Epub 2009 Apr 13.

42.

Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity.

Gros PA, Tenaillon O.

Genetics. 2009 Jun;182(2):555-64. doi: 10.1534/genetics.108.099366. Epub 2009 Mar 23.

43.

The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation.

Gros PA, Le Nagard H, Tenaillon O.

Genetics. 2009 May;182(1):277-93. doi: 10.1534/genetics.108.099127. Epub 2009 Mar 11.

44.

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E.

PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23.

45.

Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species.

Schubert S, Darlu P, Clermont O, Wieser A, Magistro G, Hoffmann C, Weinert K, Tenaillon O, Matic I, Denamur E.

PLoS Pathog. 2009 Jan;5(1):e1000257. doi: 10.1371/journal.ppat.1000257. Epub 2009 Jan 9.

46.

Apparent mutational hotspots and long distance linkage disequilibrium resulting from a bottleneck.

Tenaillon MI, Austerlitz F, Tenaillon O.

J Evol Biol. 2008 Mar;21(2):541-50. doi: 10.1111/j.1420-9101.2007.01490.x. Epub 2008 Jan 17.

47.

Evidence for a human-specific Escherichia coli clone.

Clermont O, Lescat M, O'Brien CL, Gordon DM, Tenaillon O, Denamur E.

Environ Microbiol. 2008 Apr;10(4):1000-6. doi: 10.1111/j.1462-2920.2007.01520.x. Epub 2008 Jan 6.

PMID:
18177373
48.

Mutation rate and genome reduction in endosymbiotic and free-living bacteria.

Marais GA, Calteau A, Tenaillon O.

Genetica. 2008 Oct;134(2):205-10. Epub 2007 Nov 29.

PMID:
18046510
49.

Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains.

Le Gall T, Clermont O, Gouriou S, Picard B, Nassif X, Denamur E, Tenaillon O.

Mol Biol Evol. 2007 Nov;24(11):2373-84. Epub 2007 Aug 19.

PMID:
17709333
50.

Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment.

Nora T, Charpentier C, Tenaillon O, Hoede C, Clavel F, Hance AJ.

J Virol. 2007 Jul;81(14):7620-8. Epub 2007 May 9.

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