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Items: 30

1.

Genome Sequences of Four Vibrio parahaemolyticus Strains Isolated from the English Channel and the River Thames.

Witherall L, Wagley S, Butler C, Tyler CR, Temperton B.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00392-19. doi: 10.1128/MRA.00392-19.

2.

Knock-on community impacts of a novel vector: spillover of emerging DWV-B from Varroa-infested honeybees to wild bumblebees.

Manley R, Temperton B, Doyle T, Gates D, Hedges S, Boots M, Wilfert L.

Ecol Lett. 2019 Aug;22(8):1306-1315. doi: 10.1111/ele.13323. Epub 2019 Jun 12.

PMID:
31190366
3.

Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands.

Warwick-Dugdale J, Solonenko N, Moore K, Chittick L, Gregory AC, Allen MJ, Sullivan MB, Temperton B.

PeerJ. 2019 Apr 25;7:e6800. doi: 10.7717/peerj.6800. eCollection 2019.

4.

Marine DNA Viral Macro- and Microdiversity from Pole to Pole.

Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez-Huerta G, Ferland J, Kandels S, Liu Y, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay JÉ, Vik D; Tara Oceans Coordinators, Babin M, Bowler C, Culley AI, de Vargas C, Dutilh BE, Iudicone D, Karp-Boss L, Roux S, Sunagawa S, Wincker P, Sullivan MB.

Cell. 2019 May 16;177(5):1109-1123.e14. doi: 10.1016/j.cell.2019.03.040. Epub 2019 Apr 25.

PMID:
31031001
5.

A Parasitic Arsenic Cycle That Shuttles Energy from Phytoplankton to Heterotrophic Bacterioplankton.

Giovannoni SJ, Halsey KH, Saw J, Muslin O, Suffridge CP, Sun J, Lee CP, Moore ER, Temperton B, Noell SE.

MBio. 2019 Mar 19;10(2). pii: e00246-19. doi: 10.1128/mBio.00246-19.

6.

Host-hijacking and planktonic piracy: how phages command the microbial high seas.

Warwick-Dugdale J, Buchholz HH, Allen MJ, Temperton B.

Virol J. 2019 Feb 1;16(1):15. doi: 10.1186/s12985-019-1120-1. Review.

7.

Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.

Martinez MA, Woodcroft BJ, Ignacio Espinoza JC, Zayed AA, Singleton CM, Boyd JA, Li YF, Purvine S, Maughan H, Hodgkins SB, Anderson D, Sederholm M, Temperton B, Bolduc B, Saleska SR, Tyson GW, Rich VI; IsoGenie Project Coordinators, Saleska SR, Tyson GW, Rich VI.

Syst Appl Microbiol. 2019 Jan;42(1):54-66. doi: 10.1016/j.syapm.2018.12.003. Epub 2018 Dec 14.

8.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
9.

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Baker BJ, Seitz KW, Temperton B, Campbell LG, Rabalais NN, Henrissat B, Mason OU.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01033-18. doi: 10.1128/MRA.01033-18. eCollection 2018 Sep.

10.

Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Seitz KW, Baker BJ, Temperton B, Gillies LE, Rabalais NN, Henrissat B, Mason OU.

MBio. 2017 Sep 12;8(5). pii: e01017-17. doi: 10.1128/mBio.01017-17.

11.

Corrigendum: The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, Davie-Martin CL, Halsey KH, Giovannoni SJ.

Nat Microbiol. 2016 Oct 3;1(11):16210. doi: 10.1038/nmicrobiol.2016.210. No abstract available.

PMID:
27694837
12.

The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

Sun J, Todd JD, Thrash JC, Qian Y, Qian MC, Temperton B, Guo J, Fowler EK, Aldrich JT, Nicora CD, Lipton MS, Smith RD, De Leenheer P, Payne SH, Johnston AW, Davie-Martin CL, Halsey KH, Giovannoni SJ.

Nat Microbiol. 2016 May 16;1(8):16065. doi: 10.1038/nmicrobiol.2016.65. Erratum in: Nat Microbiol. 2016 Oct 03;1(11):16210.

PMID:
27573103
13.

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure.

Learman DR, Henson MW, Thrash JC, Temperton B, Brannock PM, Santos SR, Mahon AR, Halanych KM.

Front Microbiol. 2016 Mar 23;7:284. doi: 10.3389/fmicb.2016.00284. eCollection 2016.

14.

Chlorophyll f and chlorophyll d are produced in the cyanobacterium Chlorogloeopsis fritschii when cultured under natural light and near-infrared radiation.

Airs RL, Temperton B, Sambles C, Farnham G, Skill SC, Llewellyn CA.

FEBS Lett. 2014 Oct 16;588(20):3770-7. doi: 10.1016/j.febslet.2014.08.026. Epub 2014 Aug 28.

15.

Discovery of a SAR11 growth requirement for thiamin's pyrimidine precursor and its distribution in the Sargasso Sea.

Carini P, Campbell EO, Morré J, Sañudo-Wilhelmy SA, Thrash JC, Bennett SE, Temperton B, Begley T, Giovannoni SJ.

ISME J. 2014 Aug;8(8):1727-38. doi: 10.1038/ismej.2014.61. Epub 2014 Apr 29.

16.

Implications of streamlining theory for microbial ecology.

Giovannoni SJ, Cameron Thrash J, Temperton B.

ISME J. 2014 Aug;8(8):1553-65. doi: 10.1038/ismej.2014.60. Epub 2014 Apr 17. Review.

17.

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ.

ISME J. 2014 Jul;8(7):1440-51. doi: 10.1038/ismej.2013.243. Epub 2014 Jan 23.

18.

Giovannoni et al. reply.

Giovannoni S, Temperton B, Zhao Y.

Nature. 2013 Jul 25;499(7459):E4-5. doi: 10.1038/nature12388.

PMID:
23887435
19.

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.

Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ.

ISME J. 2013 Jul;7(7):1322-32. doi: 10.1038/ismej.2013.32. Epub 2013 Mar 7.

20.

Abundant SAR11 viruses in the ocean.

Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ.

Nature. 2013 Feb 21;494(7437):357-60. doi: 10.1038/nature11921. Epub 2013 Feb 13.

PMID:
23407494
21.

Metagenomics: microbial diversity through a scratched lens.

Temperton B, Giovannoni SJ.

Curr Opin Microbiol. 2012 Oct;15(5):605-12. doi: 10.1016/j.mib.2012.07.001. Epub 2012 Jul 23. Review.

PMID:
22831844
22.

Defining seasonal marine microbial community dynamics.

Gilbert JA, Steele JA, Caporaso JG, Steinbrück L, Reeder J, Temperton B, Huse S, McHardy AC, Knight R, Joint I, Somerfield P, Fuhrman JA, Field D.

ISME J. 2012 Feb;6(2):298-308. doi: 10.1038/ismej.2011.107. Epub 2011 Aug 18.

23.

Permanent draft genome sequence of Vibrio tubiashii strain NCIMB 1337 (ATCC19106).

Temperton B, Thomas S, Tait K, Parry H, Emery M, Allen M, Quinn J, Macgrath J, Gilbert J.

Stand Genomic Sci. 2011 Apr 29;4(2):183-90. doi: 10.4056/sigs.1654066.

24.

Metagenomics.

Gilbert JA, Laverock B, Temperton B, Thomas S, Muhling M, Hughes M.

Methods Mol Biol. 2011;733:173-83. doi: 10.1007/978-1-61779-089-8_12.

PMID:
21431770
25.

Novel analysis of oceanic surface water metagenomes suggests importance of polyphosphate metabolism in oligotrophic environments.

Temperton B, Gilbert JA, Quinn JP, McGrath JW.

PLoS One. 2011 Jan 28;6(1):e16499. doi: 10.1371/journal.pone.0016499.

26.

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation.

Gilbert JA, Field D, Swift P, Thomas S, Cummings D, Temperton B, Weynberg K, Huse S, Hughes M, Joint I, Somerfield PJ, Mühling M.

PLoS One. 2010 Nov 29;5(11):e15545. doi: 10.1371/journal.pone.0015545.

27.

Average genome size: a potential source of bias in comparative metagenomics.

Beszteri B, Temperton B, Frickenhaus S, Giovannoni SJ.

ISME J. 2010 Aug;4(8):1075-7. doi: 10.1038/ismej.2010.29. Epub 2010 Mar 25.

PMID:
20336158
28.

Pyrosequencing of Mytilus galloprovincialis cDNAs: tissue-specific expression patterns.

Craft JA, Gilbert JA, Temperton B, Dempsey KE, Ashelford K, Tiwari B, Hutchinson TH, Chipman JK.

PLoS One. 2010 Jan 25;5(1):e8875. doi: 10.1371/journal.pone.0008875.

29.

Evidence for phosphonate usage in the coral holobiont.

Thomas S, Burdett H, Temperton B, Wick R, Snelling D, McGrath JW, Quinn JP, Munn C, Gilbert JA.

ISME J. 2010 Mar;4(3):459-61. doi: 10.1038/ismej.2009.129. Epub 2009 Dec 3.

PMID:
19956272
30.

Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing.

Temperton B, Field D, Oliver A, Tiwari B, Mühling M, Joint I, Gilbert JA.

ISME J. 2009 Jul;3(7):792-6. doi: 10.1038/ismej.2009.32. Epub 2009 Apr 2.

PMID:
19340085

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