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Items: 38

1.

Yeast mitochondrial protein Pet111p binds directly to two distinct targets in COX2 mRNA, suggesting a mechanism of translational activation.

Jones JL, Hofmann KB, Cowan AT, Temiakov D, Cramer P, Anikin M.

J Biol Chem. 2019 May 3;294(18):7528-7536. doi: 10.1074/jbc.RA118.005355. Epub 2019 Mar 25.

PMID:
30910813
2.

Author Correction: Mitochondrial replacement in human oocytes carrying pathogenic mitochondrial DNA mutations.

Kang E, Wu J, Gutierrez NM, Koski A, Tippner-Hedges R, Agaronyan K, Platero-Luengo A, Martinez-Redondo P, Ma H, Lee Y, Hayama T, Van Dyken C, Wang X, Luo S, Ahmed R, Li Y, Ji D, Kayali R, Cinnioglu C, Olson S, Jensen J, Battaglia D, Lee D, Wu D, Huang T, Wolf DP, Temiakov D, Belmonte JCI, Amato P, Mitalipov S.

Nature. 2019 Mar;567(7747):E5-E9. doi: 10.1038/s41586-019-0876-1.

PMID:
30814738
3.

Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase.

Bird JG, Basu U, Kuster D, Ramachandran A, Grudzien-Nogalska E, Towheed A, Wallace DC, Kiledjian M, Temiakov D, Patel SS, Ebright RH, Nickels BE.

Elife. 2018 Dec 12;7. pii: e42179. doi: 10.7554/eLife.42179.

4.

Structural basis of mitochondrial transcription.

Hillen HS, Temiakov D, Cramer P.

Nat Struct Mol Biol. 2018 Sep;25(9):754-765. doi: 10.1038/s41594-018-0122-9. Epub 2018 Sep 6. Review.

5.

Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms.

King GA, Hashemi Shabestari M, Taris KH, Pandey AK, Venkatesh S, Thilagavathi J, Singh K, Krishna Koppisetti R, Temiakov D, Roos WH, Suzuki CK, Wuite GJL.

Nucleic Acids Res. 2018 Apr 20;46(7):3633-3642. doi: 10.1093/nar/gky204.

6.

Structural Basis of Mitochondrial Transcription Initiation.

Hillen HS, Morozov YI, Sarfallah A, Temiakov D, Cramer P.

Cell. 2017 Nov 16;171(5):1072-1081.e10. doi: 10.1016/j.cell.2017.10.036.

7.

Mechanism of Transcription Anti-termination in Human Mitochondria.

Hillen HS, Parshin AV, Agaronyan K, Morozov YI, Graber JJ, Chernev A, Schwinghammer K, Urlaub H, Anikin M, Cramer P, Temiakov D.

Cell. 2017 Nov 16;171(5):1082-1093.e13. doi: 10.1016/j.cell.2017.09.035. Epub 2017 Oct 12.

8.

Mitochondrial replacement in human oocytes carrying pathogenic mitochondrial DNA mutations.

Kang E, Wu J, Gutierrez NM, Koski A, Tippner-Hedges R, Agaronyan K, Platero-Luengo A, Martinez-Redondo P, Ma H, Lee Y, Hayama T, Van Dyken C, Wang X, Luo S, Ahmed R, Li Y, Ji D, Kayali R, Cinnioglu C, Olson S, Jensen J, Battaglia D, Lee D, Wu D, Huang T, Wolf DP, Temiakov D, Belmonte JC, Amato P, Mitalipov S.

Nature. 2016 Dec 8;540(7632):270-275. doi: 10.1038/nature20592. Epub 2016 Nov 30. Erratum in: Nature. 2019 Mar;567(7747):E5-E9.

PMID:
27919073
9.

Human Mitochondrial Transcription Initiation Complexes Have Similar Topology on the Light and Heavy Strand Promoters.

Morozov YI, Temiakov D.

J Biol Chem. 2016 Jun 24;291(26):13432-5. doi: 10.1074/jbc.C116.727966. Epub 2016 May 13.

10.

A model for transcription initiation in human mitochondria.

Morozov YI, Parshin AV, Agaronyan K, Cheung AC, Anikin M, Cramer P, Temiakov D.

Nucleic Acids Res. 2015 Apr 20;43(7):3726-35. doi: 10.1093/nar/gkv235. Epub 2015 Mar 23.

11.

Mitochondrial biology. Replication-transcription switch in human mitochondria.

Agaronyan K, Morozov YI, Anikin M, Temiakov D.

Science. 2015 Jan 30;347(6221):548-51. doi: 10.1126/science.aaa0986.

12.

A novel intermediate in transcription initiation by human mitochondrial RNA polymerase.

Morozov YI, Agaronyan K, Cheung AC, Anikin M, Cramer P, Temiakov D.

Nucleic Acids Res. 2014 Apr;42(6):3884-93. doi: 10.1093/nar/gkt1356. Epub 2014 Jan 6.

13.

Structure of human mitochondrial RNA polymerase elongation complex.

Schwinghammer K, Cheung AC, Morozov YI, Agaronyan K, Temiakov D, Cramer P.

Nat Struct Mol Biol. 2013 Nov;20(11):1298-303. doi: 10.1038/nsmb.2683. Epub 2013 Oct 6.

14.

Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.

Lu B, Lee J, Nie X, Li M, Morozov YI, Venkatesh S, Bogenhagen DF, Temiakov D, Suzuki CK.

Mol Cell. 2013 Jan 10;49(1):121-32. doi: 10.1016/j.molcel.2012.10.023. Epub 2012 Nov 29.

15.

Plant lectin can target receptors containing sialic acid, exemplified by podoplanin, to inhibit transformed cell growth and migration.

Ochoa-Alvarez JA, Krishnan H, Shen Y, Acharya NK, Han M, McNulty DE, Hasegawa H, Hyodo T, Senga T, Geng JG, Kosciuk M, Shin SS, Goydos JS, Temiakov D, Nagele RG, Goldberg GS.

PLoS One. 2012;7(7):e41845. doi: 10.1371/journal.pone.0041845. Epub 2012 Jul 23.

16.

Structure of human mitochondrial RNA polymerase.

Ringel R, Sologub M, Morozov YI, Litonin D, Cramer P, Temiakov D.

Nature. 2011 Sep 25;478(7368):269-73. doi: 10.1038/nature10435.

PMID:
21947009
17.

Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro.

Litonin D, Sologub M, Shi Y, Savkina M, Anikin M, Falkenberg M, Gustafsson CM, Temiakov D.

J Biol Chem. 2010 Jun 11;285(24):18129-33. doi: 10.1074/jbc.C110.128918. Epub 2010 Apr 21.

18.

TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase.

Sologub M, Litonin D, Anikin M, Mustaev A, Temiakov D.

Cell. 2009 Nov 25;139(5):934-44. doi: 10.1016/j.cell.2009.10.031.

19.

Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation.

Savkina M, Temiakov D, McAllister WT, Anikin M.

J Biol Chem. 2010 Feb 5;285(6):3957-64. doi: 10.1074/jbc.M109.051003. Epub 2009 Nov 17.

20.

[Transcription and its regulation in mammalian and human mitochondria].

Sologub MIu, Kochetkov SN, Temiakov DE.

Mol Biol (Mosk). 2009 Mar-Apr;43(2):215-29. Review. Russian.

PMID:
19425491
21.

Maintenance of RNA-DNA hybrid length in bacterial RNA polymerases.

Kent T, Kashkina E, Anikin M, Temiakov D.

J Biol Chem. 2009 May 15;284(20):13497-504. doi: 10.1074/jbc.M901898200. Epub 2009 Mar 25. Erratum in: J Biol Chem. 2009 Aug 14;284(33):22500.

22.

Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site.

Kashkina E, Anikin M, Brueckner F, Lehmann E, Kochetkov SN, McAllister WT, Cramer P, Temiakov D.

J Biol Chem. 2007 Jul 27;282(30):21578-82. Epub 2007 May 25. Erratum in: J Biol Chem. 2009 Aug 14;284(33):22500.

23.

Template misalignment in multisubunit RNA polymerases and transcription fidelity.

Kashkina E, Anikin M, Brueckner F, Pomerantz RT, McAllister WT, Cramer P, Temiakov D.

Mol Cell. 2006 Oct 20;24(2):257-66.

24.

A mechanism of nucleotide misincorporation during transcription due to template-strand misalignment.

Pomerantz RT, Temiakov D, Anikin M, Vassylyev DG, McAllister WT.

Mol Cell. 2006 Oct 20;24(2):245-55.

25.

Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations.

Kashkina E, Anikin M, Tahirov TH, Kochetkov SN, Vassylyev DG, Temiakov D.

Nucleic Acids Res. 2006;34(14):4036-45. Epub 2006 Aug 16.

26.

Probing conformational changes in T7 RNA polymerase during initiation and termination by using engineered disulfide linkages.

Ma K, Temiakov D, Anikin M, McAllister WT.

Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17612-7. Epub 2005 Nov 21.

27.

Structural basis of transcription inhibition by antibiotic streptolydigin.

Temiakov D, Zenkin N, Vassylyeva MN, Perederina A, Tahirov TH, Kashkina E, Savkina M, Zorov S, Nikiforov V, Igarashi N, Matsugaki N, Wakatsuki S, Severinov K, Vassylyev DG.

Mol Cell. 2005 Sep 2;19(5):655-66.

28.

Structural basis for substrate selection by t7 RNA polymerase.

Temiakov D, Patlan V, Anikin M, McAllister WT, Yokoyama S, Vassylyev DG.

Cell. 2004 Feb 6;116(3):381-91.

29.

Probing the organization of transcription complexes using photoreactive 4-thio-substituted analogs of uracil and thymidine.

Temiakov D, Anikin M, Ma K, Jiang M, McAllister WT.

Methods Enzymol. 2003;371:133-43. No abstract available.

PMID:
14712696
30.

Crystallization and preliminary crystallographic analysis of T7 RNA polymerase elongation complex.

Temiakov D, Tahirov TH, Anikin M, McAllister WT, Vassylyev DG, Yokoyama S.

Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):185-7. Epub 2002 Dec 19.

PMID:
12499566
31.

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution.

Tahirov TH, Temiakov D, Anikin M, Patlan V, McAllister WT, Vassylyev DG, Yokoyama S.

Nature. 2002 Nov 7;420(6911):43-50. Epub 2002 Oct 9.

PMID:
12422209
32.

Characterization of T7 RNA polymerase transcription complexes assembled on nucleic acid scaffolds.

Temiakov D, Anikin M, McAllister WT.

J Biol Chem. 2002 Dec 6;277(49):47035-43. Epub 2002 Sep 25.

33.

Major conformational changes occur during the transition from an initiation complex to an elongation complex by T7 RNA polymerase.

Ma K, Temiakov D, Jiang M, Anikin M, McAllister WT.

J Biol Chem. 2002 Nov 8;277(45):43206-15. Epub 2002 Aug 16.

34.

The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance.

Temiakov D, Mentesana PE, Ma K, Mustaev A, Borukhov S, McAllister WT.

Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14109-14.

35.

Study of heterogeneity of lectins in mistletoe preparations by monoclonal antibodies to their A-subunits.

Tonevitsky AG, Agapov I, Temiakov D, Moisenovich M, Maluchenko N, Solopova O, Würzner G, Pfueller U.

Arzneimittelforschung. 1999 Nov;49(11):970-5.

PMID:
10604051
36.

Characterization of an unusual, sequence-specific termination signal for T7 RNA polymerase.

He B, Kukarin A, Temiakov D, Chin-Bow ST, Lyakhov DL, Rong M, Durbin RK, McAllister WT.

J Biol Chem. 1998 Jul 24;273(30):18802-11.

37.

Preliminary crystallographic characterization of ricin agglutinin.

Sweeney EC, Tonevitsky AG, Temiakov DE, Agapov II, Saward S, Palmer RA.

Proteins. 1997 Aug;28(4):586-9.

PMID:
9261874
38.

[Resistance of hybridoma cells, producing antibodies against the binding subunit of plant toxin MLI, to the cytotoxic effect of this toxin].

Tonevitskiĭ AG, Shamshiev AT, Prokof'ev SA, Agapov II, Temiakov DE, Ryzhavskaia AS, Pfiuller K.

Mol Biol (Mosk). 1996 Mar-Apr;30(2):416-25. Russian. No abstract available.

PMID:
8724774

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