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Items: 11

1.

Hybrid Search: A Method for Identifying Metabolites Absent from Tandem Mass Spectrometry Libraries.

Cooper BT, Yan X, Simón-Manso Y, Tchekhovskoi DV, Mirokhin YA, Stein SE.

Anal Chem. 2019 Oct 10. doi: 10.1021/acs.analchem.9b03415. [Epub ahead of print]

PMID:
31600070
2.

The NISTmAb tryptic peptide spectral library for monoclonal antibody characterization.

Dong Q, Liang Y, Yan X, Markey SP, Mirokhin YA, Tchekhovskoi DV, Bukhari TH, Stein SE.

MAbs. 2018 Apr;10(3):354-369. doi: 10.1080/19420862.2018.1436921. Epub 2018 Mar 6.

3.

Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches.

Zhang Z, Burke M, Mirokhin YA, Tchekhovskoi DV, Markey SP, Yu W, Chaerkady R, Hess S, Stein SE.

J Proteome Res. 2018 Feb 2;17(2):846-857. doi: 10.1021/acs.jproteome.7b00614. Epub 2018 Jan 11.

PMID:
29281288
4.

Combining Fragment-Ion and Neutral-Loss Matching during Mass Spectral Library Searching: A New General Purpose Algorithm Applicable to Illicit Drug Identification.

Moorthy AS, Wallace WE, Kearsley AJ, Tchekhovskoi DV, Stein SE.

Anal Chem. 2017 Dec 19;89(24):13261-13268. doi: 10.1021/acs.analchem.7b03320. Epub 2017 Dec 1.

5.

The Hybrid Search: A Mass Spectral Library Search Method for Discovery of Modifications in Proteomics.

Burke MC, Mirokhin YA, Tchekhovskoi DV, Markey SP, Heidbrink Thompson J, Larkin C, Stein SE.

J Proteome Res. 2017 May 5;16(5):1924-1935. doi: 10.1021/acs.jproteome.6b00988. Epub 2017 Apr 11.

PMID:
28367633
6.

Mass Spectral Library Quality Assurance by Inter-Library Comparison.

Wallace WE, Ji W, Tchekhovskoi DV, Phinney KW, Stein SE.

J Am Soc Mass Spectrom. 2017 Apr;28(4):733-738. doi: 10.1007/s13361-016-1589-4. Epub 2017 Jan 26.

7.

Interconversion of Peptide Mass Spectral Libraries Derivatized with iTRAQ or TMT Labels.

Zhang Z, Yang X, Mirokhin YA, Tchekhovskoi DV, Ji W, Markey SP, Roth J, Neta P, Hizal DB, Bowen MA, Stein SE.

J Proteome Res. 2016 Sep 2;15(9):3180-7. doi: 10.1021/acs.jproteome.6b00406. Epub 2016 Aug 8.

PMID:
27386737
8.

A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.

Rudnick PA, Markey SP, Roth J, Mirokhin Y, Yan X, Tchekhovskoi DV, Edwards NJ, Thangudu RR, Ketchum KA, Kinsinger CR, Mesri M, Rodriguez H, Stein SE.

J Proteome Res. 2016 Mar 4;15(3):1023-32. doi: 10.1021/acs.jproteome.5b01091. Epub 2016 Feb 25.

9.

Metabolite profiling of a NIST Standard Reference Material for human plasma (SRM 1950): GC-MS, LC-MS, NMR, and clinical laboratory analyses, libraries, and web-based resources.

Simón-Manso Y, Lowenthal MS, Kilpatrick LE, Sampson ML, Telu KH, Rudnick PA, Mallard WG, Bearden DW, Schock TB, Tchekhovskoi DV, Blonder N, Yan X, Liang Y, Zheng Y, Wallace WE, Neta P, Phinney KW, Remaley AT, Stein SE.

Anal Chem. 2013 Dec 17;85(24):11725-31. doi: 10.1021/ac402503m. Epub 2013 Dec 3.

PMID:
24147600
10.

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE.

Mol Cell Proteomics. 2010 Feb;9(2):225-41. doi: 10.1074/mcp.M900223-MCP200. Epub 2009 Oct 16.

11.

The critical evaluation of a comprehensive mass spectral library.

Ausloos P, Clifton CL, Lias SG, Mikaya AI, Stein SE, Tchekhovskoi DV, Sparkman OD, Zaikin V, Zhu D.

J Am Soc Mass Spectrom. 1999 Apr;10(4):287-99. Erratum in: J Am Soc Mass Spectrom 1999 Jun;10(6):565. J Am Soc Mass Spectrom. 1999 Jun;10(6):565.

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