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Fighting or embracing multiplicity in neuroimaging? neighborhood leverage versus global calibration.

Chen G, Taylor PA, Cox RW, Pessoa L.

Neuroimage. 2019 Nov 5:116320. doi: 10.1016/j.neuroimage.2019.116320. [Epub ahead of print]


Inhibition of Inositol kinase B controls acute and chronic graft-versus-host disease.

Thangavelu G, Du J, Paz KG, Loschi M, Zaiken MC, Flynn R, Taylor PA, Kirchmeier AK, Panoskaltsis-Mortari A, Luznik L, MacDonald KP, Hill GR, Maillard I, Munn DH, Serody JS, Murphy WJ, Miklos D, Cutler CS, Koreth J, Antin JH, Soiffer RJ, Ritz J, Dahlberg C, Miller AT, Blazar BR.

Blood. 2019 Oct 15. pii: blood.2019000032. doi: 10.1182/blood.2019000032. [Epub ahead of print]


Donor and host B7-H4 expression negatively regulates acute graft-versus-host disease lethality.

Saha A, Taylor PA, Lees CJ, Panoskaltsis-Mortari A, Osborn MJ, Feser CJ, Thangavelu G, Melchinger W, Refaeli Y, Hill GR, Munn DH, Murphy WJ, Serody JS, Maillard I, Kreymborg K, van den Brink M, Dong C, Huang S, Zang X, Allison JP, Zeiser R, Blazar BR.

JCI Insight. 2019 Oct 3;4(19). pii: 127716. doi: 10.1172/jci.insight.127716.


Impact of planned dose reporting methods on Gamma pass rates for IROC lung and liver motion phantoms treated with pencil beam scanning protons.

Kang Y, Shen J, Liu W, Taylor PA, Mehrens HS, Ding X, Hu Y, Tryggestad E, Keole SR, Schild SE, Wong WW, Fatyga M, Bues M.

Radiat Oncol. 2019 Jun 17;14(1):108. doi: 10.1186/s13014-019-1316-y.


An integrative Bayesian approach to matrix-based analysis in neuroimaging.

Chen G, Bürkner PC, Taylor PA, Li Z, Yin L, Glen DR, Kinnison J, Cox RW, Pessoa L.

Hum Brain Mapp. 2019 Oct 1;40(14):4072-4090. doi: 10.1002/hbm.24686. Epub 2019 Jun 12.


Effect of Peptide Sequence on the LCST-Like Transition of Elastin-Like Peptides and Elastin-Like Peptide-Collagen-Like Peptide Conjugates: Simulations and Experiments.

Prhashanna A, Taylor PA, Qin J, Kiick KL, Jayaraman A.

Biomacromolecules. 2019 Mar 11;20(3):1178-1189. doi: 10.1021/acs.biomac.8b01503. Epub 2019 Feb 4.


Handling Multiplicity in Neuroimaging Through Bayesian Lenses with Multilevel Modeling.

Chen G, Xiao Y, Taylor PA, Rajendra JK, Riggins T, Geng F, Redcay E, Cox RW.

Neuroinformatics. 2019 Oct;17(4):515-545. doi: 10.1007/s12021-018-9409-6.


Robustness Analysis for External Beam Radiation Therapy Treatment Plans: Describing Uncertainty Scenarios and Reporting Their Dosimetric Consequences.

Yock AD, Mohan R, Flampouri S, Bosch W, Taylor PA, Gladstone D, Kim S, Sohn J, Wallace R, Xiao Y, Buchsbaum J.

Pract Radiat Oncol. 2019 Jul - Aug;9(4):200-207. doi: 10.1016/j.prro.2018.12.002. Epub 2018 Dec 15. Review.


Detection of interstitial oxygen contents in Czochralski grown silicon crystals using internal calibration in laser-induced breakdown spectroscopy (LIBS).

Davari SA, Taylor PA, Standley RW, Mukherjee D.

Talanta. 2019 Feb 1;193:192-198. doi: 10.1016/j.talanta.2018.09.078. Epub 2018 Sep 26.


A tail of two sides: Artificially doubled false positive rates in neuroimaging due to the sidedness choice with t-tests.

Chen G, Cox RW, Glen DR, Rajendra JK, Reynolds RC, Taylor PA.

Hum Brain Mapp. 2019 Feb 15;40(3):1037-1043. doi: 10.1002/hbm.24399. Epub 2018 Sep 28.


A New Anthropomorphic Pediatric Spine Phantom for Proton Therapy Clinical Trial Credentialing.

Lewis DJ, Taylor PA, Followill DS, Sahoo N, Mahajan A, Stingo FC, Kry SF.

Int J Part Ther. 2018 Spring;4(4):20-27. doi: 10.14338/IJPT-17-00024.1. Epub 2018 Jul 26.


Despite high levels of expression in thymic epithelial cells, miR-181a1 and miR-181b1 are not required for thymic development.

Stefanski HE, Xing Y, Taylor PA, Maio S, Henao-Meija J, Williams A, Flavell RA, Hollander GA, Blazar BR.

PLoS One. 2018 Jun 27;13(6):e0198871. doi: 10.1371/journal.pone.0198871. eCollection 2018.


Clinical examination of proton pencil beam scanning on a moving anthropomorphic lung phantom.

Wang P, Tang S, Taylor PA, Cummings DE, Janson M, Traneus E, Sturgeon JD, Lee AK, Chang C.

Med Dosim. 2019 Summer;44(2):122-129. doi: 10.1016/j.meddos.2018.04.001. Epub 2018 May 11.


MicroRNA-155 Modulates Acute Graft-versus-Host Disease by Impacting T Cell Expansion, Migration, and Effector Function.

Zitzer NC, Snyder K, Meng X, Taylor PA, Efebera YA, Devine SM, Blazar BR, Garzon R, Ranganathan P.

J Immunol. 2018 Jun 15;200(12):4170-4179. doi: 10.4049/jimmunol.1701465. Epub 2018 May 2.


Reference dosimetry data and modeling challenges for Elekta accelerators based on IROC-Houston site visit data.

Kerns JR, Followill DS, Lowenstein J, Molineu A, Alvarez P, Taylor PA, Kry SF.

Med Phys. 2018 May;45(5):2337-2344. doi: 10.1002/mp.12865. Epub 2018 Apr 1.


Methicillin-Resistant Staphylococcus aureus Colonization Is Associated with Decreased Skin Commensal Bacteria in Atopic Dermatitis.

Shi B, Leung DYM, Taylor PA, Li H.

J Invest Dermatol. 2018 Jul;138(7):1668-1671. doi: 10.1016/j.jid.2018.01.022. Epub 2018 Feb 8. No abstract available.


Functional Connectivity Alterations between Networks and Associations with Infant Immune Health within Networks in HIV Infected Children on Early Treatment: A Study at 7 Years.

Toich JTF, Taylor PA, Holmes MJ, Gohel S, Cotton MF, Dobbels E, Laughton B, Little F, van der Kouwe AJW, Biswal B, Meintjes EM.

Front Hum Neurosci. 2018 Jan 11;11:635. doi: 10.3389/fnhum.2017.00635. eCollection 2017.


Intraclass correlation: Improved modeling approaches and applications for neuroimaging.

Chen G, Taylor PA, Haller SP, Kircanski K, Stoddard J, Pine DS, Leibenluft E, Brotman MA, Cox RW.

Hum Brain Mapp. 2018 Mar;39(3):1187-1206. doi: 10.1002/hbm.23909. Epub 2017 Dec 7.


Prenatal methamphetamine exposure is associated with corticostriatal white matter changes in neonates.

Warton FL, Taylor PA, Warton CMR, Molteno CD, Wintermark P, Lindinger NM, Zöllei L, van der Kouwe A, Jacobson JL, Jacobson SW, Meintjes EM.

Metab Brain Dis. 2018 Apr;33(2):507-522. doi: 10.1007/s11011-017-0135-9. Epub 2017 Oct 23.


White Matter Abnormalities in Children with HIV Infection and Exposure.

Jankiewicz M, Holmes MJ, Taylor PA, Cotton MF, Laughton B, van der Kouwe AJW, Meintjes EM.

Front Neuroanat. 2017 Sep 29;11:88. doi: 10.3389/fnana.2017.00088. eCollection 2017.


Resting-state functional magnetic resonance imaging in clade C HIV: within-group association with neurocognitive function.

du Plessis L, Paul RH, Hoare J, Stein DJ, Taylor PA, Meintjes EM, Joska JA.

J Neurovirol. 2017 Dec;23(6):875-885. doi: 10.1007/s13365-017-0581-5. Epub 2017 Oct 2.


Pencil Beam Algorithms Are Unsuitable for Proton Dose Calculations in Lung.

Taylor PA, Kry SF, Followill DS.

Int J Radiat Oncol Biol Phys. 2017 Nov 1;99(3):750-756. doi: 10.1016/j.ijrobp.2017.06.003. Epub 2017 Jun 13.


Localized reductions in resting-state functional connectivity in children with prenatal alcohol exposure.

Fan J, Taylor PA, Jacobson SW, Molteno CD, Gohel S, Biswal BB, Jacobson JL, Meintjes EM.

Hum Brain Mapp. 2017 Oct;38(10):5217-5233. doi: 10.1002/hbm.23726. Epub 2017 Jul 22.


MAPBOT: Meta-analytic parcellation based on text, and its application to the human thalamus.

Yuan R, Taylor PA, Alvarez TL, Misra D, Biswal BB.

Neuroimage. 2017 Aug 15;157:716-732. doi: 10.1016/j.neuroimage.2017.06.032. Epub 2017 Jun 17.


fMRI clustering and false-positive rates.

Cox RW, Chen G, Glen DR, Reynolds RC, Taylor PA.

Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):E3370-E3371. doi: 10.1073/pnas.1614961114. Epub 2017 Apr 18. No abstract available.


FMRI Clustering in AFNI: False-Positive Rates Redux.

Cox RW, Chen G, Glen DR, Reynolds RC, Taylor PA.

Brain Connect. 2017 Apr;7(3):152-171. doi: 10.1089/brain.2016.0475.


Corrigendum to "Untangling the relatedness among correlations, Part I: Nonparametric approaches to inter-subject correlation analysis at the group level" [Neuroimage (in press)].

Chen G, Shin YW, Taylor PA, Glen DR, Reynolds RC, Israel RB, Cox RW.

Neuroimage. 2017 Jan 15;145(Pt A):130-132. doi: 10.1016/j.neuroimage.2016.10.021. Epub 2016 Oct 28. No abstract available.


Evaluation of a 12-Month Pilot of Long-Term and Temporary Assisted Peritoneal Dialysis.

Bevilacqua MU, Turnbull L, Saunders S, Er L, Chiu H, Hill P, Singh RS, Levin A, Copland MA, Jamal A, Brumby C, Dunne O, Taylor PA.

Perit Dial Int. 2017 May-Jun;37(3):307-313. doi: 10.3747/pdi.2016.00201. Epub 2016 Dec 1.


Examining credentialing criteria and poor performance indicators for IROC Houston's anthropomorphic head and neck phantom.

Carson ME, Molineu A, Taylor PA, Followill DS, Stingo FC, Kry SF.

Med Phys. 2016 Dec;43(12):6491.


Untangling the relatedness among correlations, Part II: Inter-subject correlation group analysis through linear mixed-effects modeling.

Chen G, Taylor PA, Shin YW, Reynolds RC, Cox RW.

Neuroimage. 2017 Feb 15;147:825-840. doi: 10.1016/j.neuroimage.2016.08.029. Epub 2016 Oct 15.


Is the statistic value all we should care about in neuroimaging?

Chen G, Taylor PA, Cox RW.

Neuroimage. 2017 Feb 15;147:952-959. doi: 10.1016/j.neuroimage.2016.09.066. Epub 2016 Oct 10. Review.


The skin microbiome is different in pediatric versus adult atopic dermatitis.

Shi B, Bangayan NJ, Curd E, Taylor PA, Gallo RL, Leung DYM, Li H.

J Allergy Clin Immunol. 2016 Oct;138(4):1233-1236. doi: 10.1016/j.jaci.2016.04.053. Epub 2016 Jun 29. No abstract available.


Development of a specialty medication prior-authorization service at an urban academic medical center.

Martin MT, Telebak E, Taylor PA, Volozhina O.

Am J Health Syst Pharm. 2016 Aug 1;73(15):1174-9. doi: 10.2146/ajhp160059.


Assessing the performance of different DTI motion correction strategies in the presence of EPI distortion correction.

Taylor PA, Alhamud A, van der Kouwe A, Saleh MG, Laughton B, Meintjes E.

Hum Brain Mapp. 2016 Dec;37(12):4405-4424. doi: 10.1002/hbm.23318. Epub 2016 Jul 20.


Agreement Between Institutional Measurements and Treatment Planning System Calculations for Basic Dosimetric Parameters as Measured by the Imaging and Radiation Oncology Core-Houston.

Kerns JR, Followill DS, Lowenstein J, Molineu A, Alvarez P, Taylor PA, Kry SF.

Int J Radiat Oncol Biol Phys. 2016 Aug 1;95(5):1527-1534. doi: 10.1016/j.ijrobp.2016.03.035. Epub 2016 Apr 2.


Programmed death ligand-1 expression on donor T cells drives graft-versus-host disease lethality.

Saha A, O'Connor RS, Thangavelu G, Lovitch SB, Dandamudi DB, Wilson CB, Vincent BG, Tkachev V, Pawlicki JM, Furlan SN, Kean LS, Aoyama K, Taylor PA, Panoskaltsis-Mortari A, Foncea R, Ranganathan P, Devine SM, Burrill JS, Guo L, Sacristan C, Snyder NW, Blair IA, Milone MC, Dustin ML, Riley JL, Bernlohr DA, Murphy WJ, Fife BT, Munn DH, Miller JS, Serody JS, Freeman GJ, Sharpe AH, Turka LA, Blazar BR.

J Clin Invest. 2016 Jul 1;126(7):2642-60. doi: 10.1172/JCI85796. Epub 2016 Jun 13.


White matter deficits mediate effects of prenatal alcohol exposure on cognitive development in childhood.

Fan J, Jacobson SW, Taylor PA, Molteno CD, Dodge NC, Stanton ME, Jacobson JL, Meintjes EM.

Hum Brain Mapp. 2016 Aug;37(8):2943-58. doi: 10.1002/hbm.23218. Epub 2016 May 24.


Untangling the relatedness among correlations, part I: Nonparametric approaches to inter-subject correlation analysis at the group level.

Chen G, Shin YW, Taylor PA, Glen DR, Reynolds RC, Israel RB, Cox RW.

Neuroimage. 2016 Nov 15;142:248-259. doi: 10.1016/j.neuroimage.2016.05.023. Epub 2016 May 17. Erratum in: Neuroimage. 2017 Jan 15;145(Pt A):130-132.


Technical Report: Reference photon dosimetry data for Varian accelerators based on IROC-Houston site visit data.

Kerns JR, Followill DS, Lowenstein J, Molineu A, Alvarez P, Taylor PA, Stingo FC, Kry SF.

Med Phys. 2016 May;43(5):2374. doi: 10.1118/1.4945697.


Results From the Imaging and Radiation Oncology Core Houston's Anthropomorphic Phantoms Used for Proton Therapy Clinical Trial Credentialing.

Taylor PA, Kry SF, Alvarez P, Keith T, Lujano C, Hernandez N, Followill DS.

Int J Radiat Oncol Biol Phys. 2016 May 1;95(1):242-8. doi: 10.1016/j.ijrobp.2016.01.061. Epub 2016 Feb 10.


Targeted Rho-associated kinase 2 inhibition suppresses murine and human chronic GVHD through a Stat3-dependent mechanism.

Flynn R, Paz K, Du J, Reichenbach DK, Taylor PA, Panoskaltsis-Mortari A, Vulic A, Luznik L, MacDonald KK, Hill GR, Nyuydzefe MS, Weiss JM, Chen W, Trzeciak A, Serody JS, Aguilar EG, Murphy WJ, Maillard I, Munn D, Koreth J, Cutler CS, Antin JH, Ritz J, Waksal SD, Zanin-Zhorov A, Blazar BR.

Blood. 2016 Apr 28;127(17):2144-54. doi: 10.1182/blood-2015-10-678706. Epub 2016 Mar 16.


Real-time measurement and correction of both B0 changes and subject motion in diffusion tensor imaging using a double volumetric navigated (DvNav) sequence.

Alhamud A, Taylor PA, van der Kouwe AJ, Meintjes EM.

Neuroimage. 2016 Feb 1;126:60-71. doi: 10.1016/j.neuroimage.2015.11.022. Epub 2015 Nov 14.


Parallel Plating of Simulated Distal Humerus Fractures Demonstrates Increased Stiffness Relative to Orthogonal Plating With a Distal Humerus Locking Plate System.

Taylor PA, Owen JR, Benfield CP, Wayne JS, Boardman ND 3rd.

J Orthop Trauma. 2016 Apr;30(4):e118-22. doi: 10.1097/BOT.0000000000000477.


DBSproc: An open source process for DBS electrode localization and tractographic analysis.

Lauro PM, Vanegas-Arroyave N, Huang L, Taylor PA, Zaghloul KA, Lungu C, Saad ZS, Horovitz SG.

Hum Brain Mapp. 2016 Jan;37(1):422-33. doi: 10.1002/hbm.23039. Epub 2015 Nov 2.


Open Environment for Multimodal Interactive Connectivity Visualization and Analysis.

Taylor PA, Chen G, Cox RW, Saad ZS.

Brain Connect. 2016 Mar;6(2):109-21. doi: 10.1089/brain.2015.0363. Epub 2015 Nov 10.


Functional topography of the thalamocortical system in human.

Yuan R, Di X, Taylor PA, Gohel S, Tsai YH, Biswal BB.

Brain Struct Funct. 2016 May;221(4):1971-84. doi: 10.1007/s00429-015-1018-7. Epub 2015 Apr 30.


Targeting Syk-activated B cells in murine and human chronic graft-versus-host disease.

Flynn R, Allen JL, Luznik L, MacDonald KP, Paz K, Alexander KA, Vulic A, Du J, Panoskaltsis-Mortari A, Taylor PA, Poe JC, Serody JS, Murphy WJ, Hill GR, Maillard I, Koreth J, Cutler CS, Soiffer RJ, Antin JH, Ritz J, Chao NJ, Clynes RA, Sarantopoulos S, Blazar BR.

Blood. 2015 Jun 25;125(26):4085-94. doi: 10.1182/blood-2014-08-595470. Epub 2015 Apr 7.


The IL-33/ST2 axis augments effector T-cell responses during acute GVHD.

Reichenbach DK, Schwarze V, Matta BM, Tkachev V, Lieberknecht E, Liu Q, Koehn BH, Pfeifer D, Taylor PA, Prinz G, Dierbach H, Stickel N, Beck Y, Warncke M, Junt T, Schmitt-Graeff A, Nakae S, Follo M, Wertheimer T, Schwab L, Devlin J, Watkins SC, Duyster J, Ferrara JL, Turnquist HR, Zeiser R, Blazar BR.

Blood. 2015 May 14;125(20):3183-92. doi: 10.1182/blood-2014-10-606830. Epub 2015 Mar 26. Erratum in: Blood. 2016 Sep 1;128(9):1311.


B7-H3 expression in donor T cells and host cells negatively regulates acute graft-versus-host disease lethality.

Veenstra RG, Flynn R, Kreymborg K, McDonald-Hyman C, Saha A, Taylor PA, Osborn MJ, Panoskaltsis-Mortari A, Schmitt-Graeff A, Lieberknecht E, Murphy WJ, Serody JS, Munn DH, Freeman GJ, Allison JP, Mak TW, van den Brink M, Zeiser R, Blazar BR.

Blood. 2015 May 21;125(21):3335-46. doi: 10.1182/blood-2014-09-603357. Epub 2015 Mar 26. Erratum in: Blood. 2016 Jun 16;127(24):3104.


Therapeutic activity of multiple common γ-chain cytokine inhibition in acute and chronic GVHD.

Hechinger AK, Smith BA, Flynn R, Hanke K, McDonald-Hyman C, Taylor PA, Pfeifer D, Hackanson B, Leonhardt F, Prinz G, Dierbach H, Schmitt-Graeff A, Kovarik J, Blazar BR, Zeiser R.

Blood. 2015 Jan 15;125(3):570-80. doi: 10.1182/blood-2014-06-581793. Epub 2014 Oct 28.

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