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Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle.

Braz CU, Taylor JF, Bresolin T, Espigolan R, Feitosa FLB, Carvalheiro R, Baldi F, de Albuquerque LG, de Oliveira HN.

BMC Genet. 2019 Jan 14;20(1):8. doi: 10.1186/s12863-019-0713-4.


The effect of micronutrient supplementation on growth and hepatic metabolism in diploid and triploid Atlantic salmon (Salmo salar) parr fed a low marine ingredient diet.

Taylor JF, Vera LM, De Santis C, Lock EJ, Espe M, Skjærven KH, Leeming D, Del Pozo J, Mota-Velasco J, Migaud H, Hamre K, Tocher DR.

Comp Biochem Physiol B Biochem Mol Biol. 2019 Jan;227:106-121. doi: 10.1016/j.cbpb.2018.10.004. Epub 2018 Oct 24.


A comprehensive manually-curated compendium of bovine transcription factors.

de Souza MM, Zerlotini A, Geistlinger L, Tizioto PC, Taylor JF, Rocha MIP, Diniz WJS, Coutinho LL, Regitano LCA.

Sci Rep. 2018 Sep 13;8(1):13747. doi: 10.1038/s41598-018-32146-2.


Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation.

Yurchenko AA, Daetwyler HD, Yudin N, Schnabel RD, Vander Jagt CJ, Soloshenko V, Lhasaranov B, Popov R, Taylor JF, Larkin DM.

Sci Rep. 2018 Aug 28;8(1):12984. doi: 10.1038/s41598-018-31304-w.


Comparative ploidy response to experimental hydrogen peroxide exposure in Atlantic salmon (Salmo salar).

Chalmers L, Vera LM, Taylor JF, Adams A, Migaud H.

Fish Shellfish Immunol. 2018 Oct;81:354-367. doi: 10.1016/j.fsi.2018.07.017. Epub 2018 Jul 25.


Genome-wide study to detect single nucleotide polymorphisms associated with visceral and subcutaneous fat deposition in Holstein dairy cows.

Melendez P, Poock SE, Pithua P, Pinedo P, Manriquez D, Moore SG, Neal JD, Taylor JF.

Animal. 2019 Mar;13(3):487-494. doi: 10.1017/S1751731118001519. Epub 2018 Jul 2.


Evolution of Laboratory Animal Program Management.

Taylor JF.

In: Weichbrod RH, Thompson GAH, Norton JN, editors. Management of Animal Care and Use Programs in Research, Education, and Testing. 2nd edition. Boca Raton (FL): CRC Press/Taylor & Francis; 2018. Chapter 1.


Impact of dietary phosphorous in diploid and triploid Atlantic salmon (Salmo salar L.) with reference to early skeletal development in freshwater.

Smedley MA, Migaud H, McStay EL, Clarkson M, Bozzolla P, Campbell P, Taylor JF.

Aquaculture. 2018 Mar 1;490:329-343. doi: 10.1016/j.aquaculture.2018.02.049.


Review: Genomics of bull fertility.

Taylor JF, Schnabel RD, Sutovsky P.

Animal. 2018 Jun;12(s1):s172-s183. doi: 10.1017/S1751731118000599. Epub 2018 Apr 5. Review.


Leveraging a relationship-based sexual health framework for sexual risk prevention in adolescent men in the United States.

Hensel DJ, Bales CL, Taylor JF, Fortenberry JD.

Sex Health. 2018 Jun;15(3):238-245. doi: 10.1071/SH17097.


A Decision Made Well.

Taylor JF, Marshall MF.

Am J Bioeth. 2018 Mar;18(3):18-19. doi: 10.1080/15265161.2017.1418925. No abstract available.


Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

Bouwman AC, Daetwyler HD, Chamberlain AJ, Ponce CH, Sargolzaei M, Schenkel FS, Sahana G, Govignon-Gion A, Boitard S, Dolezal M, Pausch H, Brøndum RF, Bowman PJ, Thomsen B, Guldbrandtsen B, Lund MS, Servin B, Garrick DJ, Reecy J, Vilkki J, Bagnato A, Wang M, Hoff JL, Schnabel RD, Taylor JF, Vinkhuyzen AAE, Panitz F, Bendixen C, Holm LE, Gredler B, Hozé C, Boussaha M, Sanchez MP, Rocha D, Capitan A, Tribout T, Barbat A, Croiseau P, Drögemüller C, Jagannathan V, Vander Jagt C, Crowley JJ, Bieber A, Purfield DC, Berry DP, Emmerling R, Götz KU, Frischknecht M, Russ I, Sölkner J, Van Tassell CP, Fries R, Stothard P, Veerkamp RF, Boichard D, Goddard ME, Hayes BJ.

Nat Genet. 2018 Mar;50(3):362-367. doi: 10.1038/s41588-018-0056-5. Epub 2018 Feb 19.


Identification of genomic variants causing sperm abnormalities and reduced male fertility.

Taylor JF, Schnabel RD, Sutovsky P.

Anim Reprod Sci. 2018 Jul;194:57-62. doi: 10.1016/j.anireprosci.2018.02.007. Epub 2018 Feb 10. Review.


Tissue Tropism in Host Transcriptional Response to Members of the Bovine Respiratory Disease Complex.

Behura SK, Tizioto PC, Kim J, Grupioni NV, Seabury CM, Schnabel RD, Gershwin LJ, Van Eenennaam AL, Toaff-Rosenstein R, Neibergs HL, Regitano LCA, Taylor JF.

Sci Rep. 2017 Dec 20;7(1):17938. doi: 10.1038/s41598-017-18205-0.


Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar.

Vera LM, Metochis C, Taylor JF, Clarkson M, Skjærven KH, Migaud H, Tocher DR.

BMC Genomics. 2017 Nov 17;18(1):886. doi: 10.1186/s12864-017-4264-7.


Candidate lethal haplotypes and causal mutations in Angus cattle.

Hoff JL, Decker JE, Schnabel RD, Taylor JF.

BMC Genomics. 2017 Oct 18;18(1):799. doi: 10.1186/s12864-017-4196-2.


Impact of Salmonid alphavirus infection in diploid and triploid Atlantic salmon (Salmo salar L.) fry.

Herath TK, Ashby AJ, Jayasuriya NS, Bron JE, Taylor JF, Adams A, Richards RH, Weidmann M, Ferguson HW, Taggart JB, Migaud H, Fordyce MJ, Thompson KD.

PLoS One. 2017 Sep 26;12(9):e0179192. doi: 10.1371/journal.pone.0179192. eCollection 2017.


Genetic diversity and population structure of South African smallholder farmer sheep breeds determined using the OvineSNP50 beadchip.

Molotsi AH, Taylor JF, Cloete SWP, Muchadeyi F, Decker JE, Whitacre LK, Sandenbergh L, Dzama K.

Trop Anim Health Prod. 2017 Dec;49(8):1771-1777. doi: 10.1007/s11250-017-1392-7. Epub 2017 Sep 16.


GM2 Gangliosidosis in Shiba Inu Dogs with an In-Frame Deletion in HEXB.

Kolicheski A, Johnson GS, Villani NA, O'Brien DP, Mhlanga-Mutangadura T, Wenger DA, Mikoloski K, Eagleson JS, Taylor JF, Schnabel RD, Katz ML.

J Vet Intern Med. 2017 Sep;31(5):1520-1526. doi: 10.1111/jvim.14794. Epub 2017 Aug 20.


Early nutritional intervention can improve utilisation of vegetable-based diets in diploid and triploid Atlantic salmon (Salmo salar L.).

Clarkson M, Migaud H, Metochis C, Vera LM, Leeming D, Tocher DR, Taylor JF.

Br J Nutr. 2017 Jul;118(1):17-29. doi: 10.1017/S0007114517001842. Epub 2017 Jul 24.


Rapid Communication: Subclinical bovine respiratory disease - loci and pathogens associated with lung lesions in feedlot cattle.

Kiser JN, Lawrence TE, Neupane M, Seabury CM, Taylor JF, Womack JE, Neibergs HL.

J Anim Sci. 2017 Jun;95(6):2726-2731. doi: 10.2527/jas.2017.1548.


Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle.

Seabury CM, Oldeschulte DL, Saatchi M, Beever JE, Decker JE, Halley YA, Bhattarai EK, Molaei M, Freetly HC, Hansen SL, Yampara-Iquise H, Johnson KA, Kerley MS, Kim J, Loy DD, Marques E, Neibergs HL, Schnabel RD, Shike DW, Spangler ML, Weaber RL, Garrick DJ, Taylor JF.

BMC Genomics. 2017 May 18;18(1):386. doi: 10.1186/s12864-017-3754-y.


Identification of loci associated with susceptibility to subspecies () tissue infection in cattle.

Kiser JN, White SN, Johnson KA, Hoff JL, Taylor JF, Neibergs HL.

J Anim Sci. 2017 Mar;95(3):1080-1091. doi: 10.2527/jas.2016.1152.


Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2017 Apr 5;7:44345. doi: 10.1038/srep44345. No abstract available.


Association of single nucleotide polymorphisms in candidate genes previously related to genetic variation in fertility with phenotypic measurements of reproductive function in Holstein cows.

Ortega MS, Denicol AC, Cole JB, Null DJ, Taylor JF, Schnabel RD, Hansen PJ.

J Dairy Sci. 2017 May;100(5):3725-3734. doi: 10.3168/jds.2016-12260. Epub 2017 Mar 2.


Effects of Arthrocen, an avocado/soy unsaponifiables agent, on inflammatory mediators and gene expression in human chondrocytes.

Goudarzi R, Taylor JF, Yazdi PG, Pedersen BA.

FEBS Open Bio. 2017 Jan 9;7(2):187-194. doi: 10.1002/2211-5463.12176. eCollection 2017 Feb. Erratum in: FEBS Open Bio. 2018 Jul 09;8(8):1364.


Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis.

Whitacre LK, Hoff JL, Schnabel RD, Albarella S, Ciotola F, Peretti V, Strozzi F, Ferrandi C, Ramunno L, Sonstegard TS, Williams JL, Taylor JF, Decker JE.

Sci Rep. 2017 Jan 3;7:39719. doi: 10.1038/srep39719.


In Vitro Effects of Arthrocen, an Avocado/Soy Unsaponifiables Agent, on Inflammation and Global Gene Expression in Human Monocytes.

Taylor JF, Goudarzi R, Yazdi PG, Pedersen BA.

Int J Chem. 2017;9(4):31-39. doi: 10.5539/ijc.v9n4p31.


Homozygous PPT1 Splice Donor Mutation in a Cane Corso Dog With Neuronal Ceroid Lipofuscinosis.

Kolicheski A, Barnes Heller HL, Arnold S, Schnabel RD, Taylor JF, Knox CA, Mhlanga-Mutangadura T, O'Brien DP, Johnson GS, Dreyfus J, Katz ML.

J Vet Intern Med. 2017 Jan;31(1):149-157. doi: 10.1111/jvim.14632. Epub 2016 Dec 23.


Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2016 Dec 22;6:39493. doi: 10.1038/srep39493. Erratum in: Sci Rep. 2017 Apr 05;7:44345.


A homozygous PIGN missense mutation in Soft-Coated Wheaten Terriers with a canine paroxysmal dyskinesia.

Kolicheski AL, Johnson GS, Mhlanga-Mutangadura T, Taylor JF, Schnabel RD, Kinoshita T, Murakami Y, O'Brien DP.

Neurogenetics. 2017 Jan;18(1):39-47. doi: 10.1007/s10048-016-0502-4. Epub 2016 Nov 28.


Ethical Barriers in Adolescent Oncofertility Counseling.

Runco DV, Taylor JF, Helft PR.

J Pediatr Hematol Oncol. 2017 Jan;39(1):56-61. Review.


Insight into the genetic composition of South African Sanga cattle using SNP data from cattle breeds worldwide.

Makina SO, Whitacre LK, Decker JE, Taylor JF, MacNeil MD, Scholtz MM, van Marle-Köster E, Muchadeyi FC, Makgahlela ML, Maiwashe A.

Genet Sel Evol. 2016 Nov 15;48(1):88.


Early cave art and ancient DNA record the origin of European bison.

Soubrier J, Gower G, Chen K, Richards SM, Llamas B, Mitchell KJ, Ho SY, Kosintsev P, Lee MS, Baryshnikov G, Bollongino R, Bover P, Burger J, Chivall D, Crégut-Bonnoure E, Decker JE, Doronichev VB, Douka K, Fordham DA, Fontana F, Fritz C, Glimmerveen J, Golovanova LV, Groves C, Guerreschi A, Haak W, Higham T, Hofman-Kamińska E, Immel A, Julien MA, Krause J, Krotova O, Langbein F, Larson G, Rohrlach A, Scheu A, Schnabel RD, Taylor JF, Tokarska M, Tosello G, van der Plicht J, van Loenen A, Vigne JD, Wooley O, Orlando L, Kowalczyk R, Shapiro B, Cooper A.

Nat Commun. 2016 Oct 18;7:13158. doi: 10.1038/ncomms13158.


Effects of temperature on feed intake and plasma chemistry after exhaustive exercise in triploid brown trout (Salmo trutta L).

Preston AC, Taylor JF, Fjelldal PG, Hansen T, Migaud H.

Fish Physiol Biochem. 2017 Apr;43(2):337-350. doi: 10.1007/s10695-016-0290-7. Epub 2016 Sep 13.


Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications.

Wu XL, Xu J, Feng G, Wiggans GR, Taylor JF, He J, Qian C, Qiu J, Simpson B, Walker J, Bauck S.

PLoS One. 2016 Sep 1;11(9):e0161719. doi: 10.1371/journal.pone.0161719. eCollection 2016.


A comparison of the response of diploid and triploid Atlantic salmon (Salmo salar) siblings to a commercial furunculosis vaccine and subsequent experimental infection with Aeromonas salmonicida.

Chalmers L, Thompson KD, Taylor JF, Black S, Migaud H, North B, Adams A.

Fish Shellfish Immunol. 2016 Oct;57:301-308. doi: 10.1016/j.fsi.2016.08.049. Epub 2016 Aug 25.


Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.

Taylor JF, Whitacre LK, Hoff JL, Tizioto PC, Kim J, Decker JE, Schnabel RD.

Genet Sel Evol. 2016 Aug 17;48(1):59. doi: 10.1186/s12711-016-0237-6.


Four steps to preserving adolescent confidentiality in an electronic health environment.

Williams RL, Taylor JF.

Curr Opin Obstet Gynecol. 2016 Oct;28(5):393-8. doi: 10.1097/GCO.0000000000000305. Review.


Expression of the Bovine NK-Lysin Gene Family and Activity against Respiratory Pathogens.

Chen J, Yang C, Tizioto PC, Huang H, Lee MO, Payne HR, Lawhon SD, Schroeder F, Taylor JF, Womack JE.

PLoS One. 2016 Jul 13;11(7):e0158882. doi: 10.1371/journal.pone.0158882. eCollection 2016.


Holsteins are the genomic selection poster cows.

Taylor JF, Taylor KH, Decker JE.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7690-2. doi: 10.1073/pnas.1608144113. Epub 2016 Jun 29. No abstract available.


Australian Cattle Dogs with Neuronal Ceroid Lipofuscinosis are Homozygous for a CLN5 Nonsense Mutation Previously Identified in Border Collies.

Kolicheski A, Johnson GS, O'Brien DP, Mhlanga-Mutangadura T, Gilliam D, Guo J, Anderson-Sieg TD, Schnabel RD, Taylor JF, Lebowitz A, Swanson B, Hicks D, Niman ZE, Wininger FA, Carpentier MC, Katz ML.

J Vet Intern Med. 2016 Jul;30(4):1149-58. doi: 10.1111/jvim.13971. Epub 2016 May 20.


Regulate genome-edited products, not genome editing itself.

Carroll D, Van Eenennaam AL, Taylor JF, Seger J, Voytas DF.

Nat Biotechnol. 2016 May 6;34(5):477-9. doi: 10.1038/nbt.3566. No abstract available.


Adiposity, lipogenesis, and fatty acid composition of subcutaneous and intramuscular adipose tissues of Brahman and Angus crossbred cattle.

Campbell EM, Sanders JO, Lunt DK, Gill CA, Taylor JF, Davis SK, Riley DG, Smith SB.

J Anim Sci. 2016 Apr;94(4):1415-25. doi: 10.2527/jas.2015-9954.


Fertility Preservation after a Cancer Diagnosis: A Systematic Review of Adolescents', Parents', and Providers' Perspectives, Experiences, and Preferences.

Taylor JF, Ott MA.

J Pediatr Adolesc Gynecol. 2016 Dec;29(6):585-598. doi: 10.1016/j.jpag.2016.04.005. Epub 2016 Apr 21. Review.


Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE.

DNA Res. 2016 Jun;23(3):253-62. doi: 10.1093/dnares/dsw013. Epub 2016 Apr 15.


Variation in myogenic differentiation 1 mRNA abundance is associated with beef tenderness in Nelore cattle.

Tizioto PC, Coutinho LL, Mourão GB, Gasparin G, Malagó W Jr, Bressani FA, Tullio RR, Nassu RT, Taylor JF, Regitano LC.

Anim Genet. 2016 Aug;47(4):491-4. doi: 10.1111/age.12434. Epub 2016 Mar 30.


Genome-wide association study of tick resistance in South African Nguni cattle.

Mapholi NO, Maiwashe A, Matika O, Riggio V, Bishop SC, MacNeil MD, Banga C, Taylor JF, Dzama K.

Ticks Tick Borne Dis. 2016 Apr;7(3):487-97. doi: 10.1016/j.ttbdis.2016.02.005. Epub 2016 Feb 17.


Origins of cattle on Chirikof Island, Alaska, elucidated from genome-wide SNP genotypes.

Decker JE, Taylor JF, Kantanen J, Millbrooke A, Schnabel RD, Alexander LJ, MacNeil MD.

Heredity (Edinb). 2016 Jun;116(6):502-5. doi: 10.1038/hdy.2016.7. Epub 2016 Feb 10.

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