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Items: 37

1.

Sex differences in gene regulation in the dorsal root ganglion after nerve injury.

Stephens KE, Zhou W, Ji Z, Chen Z, He S, Ji H, Guan Y, Taverna SD.

BMC Genomics. 2019 Feb 19;20(1):147. doi: 10.1186/s12864-019-5512-9.

2.

Proteomic characterization of the arsenic response locus in S. cerevisiae.

West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ.

Epigenetics. 2019 Feb;14(2):130-145. doi: 10.1080/15592294.2019.1580110. Epub 2019 Mar 1.

PMID:
30739529
3.

RNA-seq of spinal cord from nerve-injured rats after spinal cord stimulation.

Stephens KE, Chen Z, Sivanesan E, Raja SN, Linderoth B, Taverna SD, Guan Y.

Mol Pain. 2018 Jan-Dec;14:1744806918817429. doi: 10.1177/1744806918817429. Epub 2018 Nov 19.

4.

Hydrazide Mimics for Protein Lysine Acylation To Assess Nucleosome Dynamics and Deubiquitinase Action.

Bhat S, Hwang Y, Gibson MD, Morgan MT, Taverna SD, Zhao Y, Wolberger C, Poirier MG, Cole PA.

J Am Chem Soc. 2018 Aug 1;140(30):9478-9485. doi: 10.1021/jacs.8b03572. Epub 2018 Jul 24.

5.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.

Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS.

Elife. 2016 Nov 28;5. pii: e19090. doi: 10.7554/eLife.19090.

6.

Reader domain specificity and lysine demethylase-4 family function.

Su Z, Wang F, Lee JH, Stephens KE, Papazyan R, Voronina E, Krautkramer KA, Raman A, Thorpe JJ, Boersma MD, Kuznetsov VI, Miller MD, Taverna SD, Phillips GN Jr, Denu JM.

Nat Commun. 2016 Nov 14;7:13387. doi: 10.1038/ncomms13387.

7.

Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin.

Xiong J, Gao S, Dui W, Yang W, Chen X, Taverna SD, Pearlman RE, Ashlock W, Miao W, Liu Y.

Nucleic Acids Res. 2016 Dec 1;44(21):10091-10105. Epub 2016 Aug 3.

8.

Nucleosome competition reveals processive acetylation by the SAGA HAT module.

Ringel AE, Cieniewicz AM, Taverna SD, Wolberger C.

Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):E5461-70. doi: 10.1073/pnas.1508449112. Epub 2015 Sep 23.

9.

Purification of specific chromatin loci for proteomic analysis.

Byrum SD, Taverna SD, Tackett AJ.

Methods Mol Biol. 2015;1228:83-92. doi: 10.1007/978-1-4939-1680-1_8.

10.

Using S-adenosyl-L-homocysteine capture compounds to characterize S-adenosyl-L-methionine and S-adenosyl-L-homocysteine binding proteins.

Brown LJ, Baranowski M, Wang Y, Schrey AK, Lenz T, Taverna SD, Cole PA, Sefkow M.

Anal Biochem. 2014 Dec 15;467:14-21. doi: 10.1016/j.ab.2014.08.013. Epub 2014 Aug 27.

11.

Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis.

Papazyan R, Voronina E, Chapman JR, Luperchio TR, Gilbert TM, Meier E, Mackintosh SG, Shabanowitz J, Tackett AJ, Reddy KL, Coyne RS, Hunt DF, Liu Y, Taverna SD.

Elife. 2014 Aug 26;3:e02996. doi: 10.7554/eLife.02996.

12.

A CRISPR-based approach for proteomic analysis of a single genomic locus.

Waldrip ZJ, Byrum SD, Storey AJ, Gao J, Byrd AK, Mackintosh SG, Wahls WP, Taverna SD, Raney KD, Tackett AJ.

Epigenetics. 2014 Sep;9(9):1207-11. doi: 10.4161/epi.29919. Epub 2014 Jul 18.

13.

The bromodomain of Gcn5 regulates site specificity of lysine acetylation on histone H3.

Cieniewicz AM, Moreland L, Ringel AE, Mackintosh SG, Raman A, Gilbert TM, Wolberger C, Tackett AJ, Taverna SD.

Mol Cell Proteomics. 2014 Nov;13(11):2896-910. doi: 10.1074/mcp.M114.038174. Epub 2014 Aug 8.

14.

A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions.

Gilbert TM, McDaniel SL, Byrum SD, Cades JA, Dancy BC, Wade H, Tackett AJ, Strahl BD, Taverna SD.

Mol Cell Proteomics. 2014 Nov;13(11):2883-95. doi: 10.1074/mcp.M114.038224. Epub 2014 Aug 6.

15.

A selective phenelzine analogue inhibitor of histone demethylase LSD1.

Prusevich P, Kalin JH, Ming SA, Basso M, Givens J, Li X, Hu J, Taylor MS, Cieniewicz AM, Hsiao PY, Huang R, Roberson H, Adejola N, Avery LB, Casero RA Jr, Taverna SD, Qian J, Tackett AJ, Ratan RR, McDonald OG, Feinberg AP, Cole PA.

ACS Chem Biol. 2014 Jun 20;9(6):1284-93. doi: 10.1021/cb500018s. Epub 2014 Apr 7.

16.

Purification of a specific native genomic locus for proteomic analysis.

Byrum SD, Taverna SD, Tackett AJ.

Nucleic Acids Res. 2013 Nov;41(20):e195. doi: 10.1093/nar/gkt822. Epub 2013 Sep 11.

17.

Selective inhibition of p300 HAT blocks cell cycle progression, induces cellular senescence, and inhibits the DNA damage response in melanoma cells.

Yan G, Eller MS, Elm C, Larocca CA, Ryu B, Panova IP, Dancy BM, Bowers EM, Meyers D, Lareau L, Cole PA, Taverna SD, Alani RM.

J Invest Dermatol. 2013 Oct;133(10):2444-2452. doi: 10.1038/jid.2013.187. Epub 2013 Apr 18.

18.

Separation and purification of multiply acetylated proteins using cation-exchange chromatography.

Papazyan R, Taverna SD.

Methods Mol Biol. 2013;981:103-13. doi: 10.1007/978-1-62703-305-3_8.

19.

ChAP-MS: a method for identification of proteins and histone posttranslational modifications at a single genomic locus.

Byrum SD, Raman A, Taverna SD, Tackett AJ.

Cell Rep. 2012 Jul 26;2(1):198-205. doi: 10.1016/j.celrep.2012.06.019. Epub 2012 Jul 20.

20.

Azalysine analogues as probes for protein lysine deacetylation and demethylation.

Dancy BC, Ming SA, Papazyan R, Jelinek CA, Majumdar A, Sun Y, Dancy BM, Drury WJ 3rd, Cotter RJ, Taverna SD, Cole PA.

J Am Chem Soc. 2012 Mar 21;134(11):5138-48. doi: 10.1021/ja209574z. Epub 2012 Mar 12.

21.

Conserved herpesvirus kinases target the DNA damage response pathway and TIP60 histone acetyltransferase to promote virus replication.

Li R, Zhu J, Xie Z, Liao G, Liu J, Chen MR, Hu S, Woodard C, Lin J, Taverna SD, Desai P, Ambinder RF, Hayward GS, Qian J, Zhu H, Hayward SD.

Cell Host Microbe. 2011 Oct 20;10(4):390-400. doi: 10.1016/j.chom.2011.08.013.

22.

Quantitative analysis of histone exchange for transcriptionally active chromatin.

Byrum SD, Taverna SD, Tackett AJ.

J Clin Bioinforma. 2011 Jul 7;1(1):17. doi: 10.1186/2043-9113-1-17.

23.

Analysis of Histone Exchange during Chromatin Purification.

Byrum S, Mackintosh SG, Edmondson RD, Cheung WL, Taverna SD, Tackett AJ.

J Integr OMICS. 2011 Feb 1;1(1):61-65.

24.

MassSQUIRM: An assay for quantitative measurement of lysine demethylase activity.

Blair LP, Avaritt NL, Huang R, Cole PA, Taverna SD, Tackett AJ.

Epigenetics. 2011 Apr;6(4):490-9. Epub 2011 Apr 1.

25.

Drug discovery: Reader's block.

Taverna SD, Cole PA.

Nature. 2010 Dec 23;468(7327):1050-1. doi: 10.1038/4681050a. No abstract available.

PMID:
21179160
26.

Mapping the local protein interactome of the NuA3 histone acetyltransferase.

Smart SK, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ.

Protein Sci. 2009 Sep;18(9):1987-97. doi: 10.1002/pro.212.

27.

A noncanonical bromodomain in the AAA ATPase protein Yta7 directs chromosomal positioning and barrier chromatin activity.

Gradolatto A, Smart SK, Byrum S, Blair LP, Rogers RS, Kolar EA, Lavender H, Larson SK, Aitchison JD, Taverna SD, Tackett AJ.

Mol Cell Biol. 2009 Sep;29(17):4604-11. doi: 10.1128/MCB.00160-09. Epub 2009 Jul 6.

28.

Saccharomyces cerevisiae Yta7 regulates histone gene expression.

Gradolatto A, Rogers RS, Lavender H, Taverna SD, Allis CD, Aitchison JD, Tackett AJ.

Genetics. 2008 May;179(1):291-304. doi: 10.1534/genetics.107.086520.

29.

How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.

Taverna SD, Li H, Ruthenburg AJ, Allis CD, Patel DJ.

Nat Struct Mol Biol. 2007 Nov;14(11):1025-1040. doi: 10.1038/nsmb1338. Epub 2007 Nov 5. Review.

30.

RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena.

Liu Y, Taverna SD, Muratore TL, Shabanowitz J, Hunt DF, Allis CD.

Genes Dev. 2007 Jun 15;21(12):1530-45.

31.

Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini.

Taverna SD, Ueberheide BM, Liu Y, Tackett AJ, Diaz RL, Shabanowitz J, Chait BT, Hunt DF, Allis CD.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2086-91. Epub 2007 Feb 6.

32.

Phosphorylation of the SQ H2A.X motif is required for proper meiosis and mitosis in Tetrahymena thermophila.

Song X, Gjoneska E, Ren Q, Taverna SD, Allis CD, Gorovsky MA.

Mol Cell Biol. 2007 Apr;27(7):2648-60. Epub 2007 Jan 22.

33.

Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs.

Taverna SD, Ilin S, Rogers RS, Tanny JC, Lavender H, Li H, Baker L, Boyle J, Blair LP, Chait BT, Patel DJ, Aitchison JD, Tackett AJ, Allis CD.

Mol Cell. 2006 Dec 8;24(5):785-796. doi: 10.1016/j.molcel.2006.10.026.

34.

The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved.

Barber CM, Turner FB, Wang Y, Hagstrom K, Taverna SD, Mollah S, Ueberheide B, Meyer BJ, Hunt DF, Cheung P, Allis CD.

Chromosoma. 2004 May;112(7):360-71. Epub 2004 May 7.

PMID:
15133681
35.

Antigen receptor loci poised for V(D)J rearrangement are broadly associated with BRG1 and flanked by peaks of histone H3 dimethylated at lysine 4.

Morshead KB, Ciccone DN, Taverna SD, Allis CD, Oettinger MA.

Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11577-82. Epub 2003 Sep 19.

36.

Methylation of histone h3 at lysine 9 targets programmed DNA elimination in tetrahymena.

Taverna SD, Coyne RS, Allis CD.

Cell. 2002 Sep 20;110(6):701-11.

37.

Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3.

Jacobs SA, Taverna SD, Zhang Y, Briggs SD, Li J, Eissenberg JC, Allis CD, Khorasanizadeh S.

EMBO J. 2001 Sep 17;20(18):5232-41.

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