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Dealing with the adaptive immune system during de novo evolution of genes from intergenic sequences.

Bekpen C, Xie C, Tautz D.

BMC Evol Biol. 2018 Aug 3;18(1):121. doi: 10.1186/s12862-018-1232-z.


Reply to 'No beneficial fitness effects of random peptides'.

Tautz D, Neme R.

Nat Ecol Evol. 2018 Jul;2(7):1048. doi: 10.1038/s41559-018-0586-3. No abstract available.


Meta-populational demes constitute a reservoir for large MHC allele diversity in wild house mice (Mus musculus).

Linnenbrink M, Teschke M, Montero I, Vallier M, Tautz D.

Front Zool. 2018 Apr 20;15:15. doi: 10.1186/s12983-018-0266-9. eCollection 2018.


Involvement of SPATA31 copy number variable genes in human lifespan.

Bekpen C, Xie C, Nebel A, Tautz D.

Aging (Albany NY). 2018 Apr 19;10(4):674-688. doi: 10.18632/aging.101421.


Low-level mitochondrial heteroplasmy modulates DNA replication, glucose metabolism and lifespan in mice.

Hirose M, Schilf P, Gupta Y, Zarse K, Künstner A, Fähnrich A, Busch H, Yin J, Wright MN, Ziegler A, Vallier M, Belheouane M, Baines JF, Tautz D, Johann K, Oelkrug R, Mittag J, Lehnert H, Othman A, Jöhren O, Schwaninger M, Prehn C, Adamski J, Shima K, Rupp J, Häsler R, Fuellen G, Köhling R, Ristow M, Ibrahim SM.

Sci Rep. 2018 Apr 12;8(1):5872. doi: 10.1038/s41598-018-24290-6.


Using the Mus musculus hybrid zone to assess covariation and genetic architecture of limb bone lengths.

Škrabar N, Turner LM, Pallares LF, Harr B, Tautz D.

Mol Ecol Resour. 2018 Jul;18(4):908-921. doi: 10.1111/1755-0998.12776. Epub 2018 Apr 10.


Random sequences are an abundant source of bioactive RNAs or peptides.

Neme R, Amador C, Yildirim B, McConnell E, Tautz D.

Nat Ecol Evol. 2017 Jun;1(6):0217. doi: 10.1038/s41559-017-0127. Epub 2017 Apr 24.


Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans.

Bekpen C, Künzel S, Xie C, Eaaswarkhanth M, Lin YL, Gokcumen O, Akdis CA, Tautz D.

BMC Genomics. 2017 Mar 6;18(1):222. doi: 10.1186/s12864-017-3595-8.


Automated Phenotyping Indicates Pupal Size in Drosophila Is a Highly Heritable Trait with an Apparent Polygenic Basis.

Reeves RG, Tautz D.

G3 (Bethesda). 2017 Apr 3;7(4):1277-1286. doi: 10.1534/g3.117.039883.


Tracing the dynamics of gene transcripts after organismal death.

Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA.

Open Biol. 2017 Jan;7(1). pii: 160267. doi: 10.1098/rsob.160267.


No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution.

Domazet-Lošo T, Carvunis AR, Albà MM, Šestak MS, Bakaric R, Neme R, Tautz D.

Mol Biol Evol. 2017 Apr 1;34(4):843-856. doi: 10.1093/molbev/msw284.


Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus.

Harr B, Karakoc E, Neme R, Teschke M, Pfeifle C, Pezer Ž, Babiker H, Linnenbrink M, Montero I, Scavetta R, Abai MR, Molins MP, Schlegel M, Ulrich RG, Altmüller J, Franitza M, Büntge A, Künzel S, Tautz D.

Sci Data. 2016 Sep 13;3:160075. doi: 10.1038/sdata.2016.75.


Craniofacial shape transition across the house mouse hybrid zone: implications for the genetic architecture and evolution of between-species differences.

Pallares LF, Turner LM, Tautz D.

Dev Genes Evol. 2016 Jun;226(3):173-86. doi: 10.1007/s00427-016-0550-7. Epub 2016 May 23.


Mapping of Craniofacial Traits in Outbred Mice Identifies Major Developmental Genes Involved in Shape Determination.

Pallares LF, Carbonetto P, Gopalakrishnan S, Parker CC, Ackert-Bicknell CL, Palmer AA, Tautz D.

PLoS Genet. 2015 Nov 2;11(11):e1005607. doi: 10.1371/journal.pgen.1005607. eCollection 2015 Nov.


Eco-genomic analysis of the poleward range expansion of the wasp spider Argiope bruennichi shows rapid adaptation and genomic admixture.

Krehenwinkel H, Rödder D, Tautz D.

Glob Chang Biol. 2015 Dec;21(12):4320-32. doi: 10.1111/gcb.13042. Epub 2015 Nov 2.


Genetic Differentiation of Hypothalamus Parentally Biased Transcripts in Populations of the House Mouse Implicate the Prader-Willi Syndrome Imprinted Region as a Possible Source of Behavioral Divergence.

Lorenc A, Linnenbrink M, Montero I, Schilhabel MB, Tautz D.

Mol Biol Evol. 2015 Jul;32(7):1914-5. doi: 10.1093/molbev/msv108. Epub 2015 May 19. No abstract available.


Eurasian house mouse (Mus musculus L.) differentiation at microsatellite loci identifies the Iranian plateau as a phylogeographic hotspot.

Hardouin EA, Orth A, Teschke M, Darvish J, Tautz D, Bonhomme F.

BMC Evol Biol. 2015 Feb 25;15:26. doi: 10.1186/s12862-015-0306-4.


The discovery of de novo gene evolution.

Tautz D.

Perspect Biol Med. 2014 Winter;57(1):149-61. doi: 10.1353/pbm.2014.0006.


Use of a natural hybrid zone for genomewide association mapping of craniofacial traits in the house mouse.

Pallares LF, Harr B, Turner LM, Tautz D.

Mol Ecol. 2014 Dec;23(23):5756-70. doi: 10.1111/mec.12968. Epub 2014 Nov 15.


Copy number variants and selective sweeps in natural populations of the house mouse (Mus musculus domesticus).

Bryk J, Tautz D.

Front Genet. 2014 Jun 3;5:153. doi: 10.3389/fgene.2014.00153. eCollection 2014. Review.


A role for ultrasonic vocalisation in social communication and divergence of natural populations of the house mouse (Mus musculus domesticus).

von Merten S, Hoier S, Pfeifle C, Tautz D.

PLoS One. 2014 May 9;9(5):e97244. doi: 10.1371/journal.pone.0097244. eCollection 2014. Erratum in: PLoS One. 2015;10(1):e0118130.


Evolution: dynamics of de novo gene emergence.

Neme R, Tautz D.

Curr Biol. 2014 Mar 17;24(6):R238-40. doi: 10.1016/j.cub.2014.02.016.


A revised design for microarray experiments to account for experimental noise and uncertainty of probe response.

Pozhitkov AE, Noble PA, Bryk J, Tautz D.

PLoS One. 2014 Mar 11;9(3):e91295. doi: 10.1371/journal.pone.0091295. eCollection 2014.


Genomic networks of hybrid sterility.

Turner LM, White MA, Tautz D, Payseur BA.

PLoS Genet. 2014 Feb 20;10(2):e1004162. doi: 10.1371/journal.pgen.1004162. eCollection 2014 Feb.


One size does not fit all.

Tautz D.

Elife. 2014;3:e02088. doi: 10.7554/eLife.02088. Epub 2014 Jan 21.


Exploring the effects of gene dosage on mandible shape in mice as a model for studying the genetic basis of natural variation.

Boell L, Pallares LF, Brodski C, Chen Y, Christian JL, Kousa YA, Kuss P, Nelsen S, Novikov O, Schutte BC, Wang Y, Tautz D.

Dev Genes Evol. 2013 Sep;223(5):279-87. doi: 10.1007/s00427-013-0443-y. Epub 2013 Apr 6.


Quantitative shape analysis with weighted covariance estimates for increased statistical efficiency.

Ragheb H, Thacker NA, Bromiley PA, Tautz D, Schunke AC.

Front Zool. 2013 Apr 2;10(1):16. doi: 10.1186/1742-9994-10-16.


Paternal imprinting of mating preferences between natural populations of house mice (Mus musculus domesticus).

Montero I, Teschke M, Tautz D.

Mol Ecol. 2013 May;22(9):2549-62. doi: 10.1111/mec.12271. Epub 2013 Mar 18.


Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution.

Neme R, Tautz D.

BMC Genomics. 2013 Feb 21;14:117. doi: 10.1186/1471-2164-14-117.


Animals in a bacterial world, a new imperative for the life sciences.

McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36. doi: 10.1073/pnas.1218525110. Epub 2013 Feb 7. Review.


Increased mitochondrial mutation frequency after an island colonization: positive selection or accumulation of slightly deleterious mutations?

Hardouin EA, Tautz D.

Biol Lett. 2013 Feb 6;9(2):20121123. doi: 10.1098/rsbl.2012.1123. Print 2013 Apr 23.


Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.

Harrison A, Binder H, Buhot A, Burden CJ, Carlon E, Gibas C, Gamble LJ, Halperin A, Hooyberghs J, Kreil DP, Levicky R, Noble PA, Ott A, Pettitt BM, Tautz D, Pozhitkov AE.

Nucleic Acids Res. 2013 Mar 1;41(5):2779-96. doi: 10.1093/nar/gks1358. Epub 2013 Jan 9. Review.


Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus).

Staubach F, Lorenc A, Messer PW, Tang K, Petrov DA, Tautz D.

PLoS Genet. 2012;8(8):e1002891. doi: 10.1371/journal.pgen.1002891. Epub 2012 Aug 30.


TINA manual landmarking tool: software for the precise digitization of 3D landmarks.

Schunke AC, Bromiley PA, Tautz D, Thacker NA.

Front Zool. 2012 Apr 5;9(1):6. doi: 10.1186/1742-9994-9-6.


Parallel selection mapping using artificially selected mice reveals body weight control loci.

Chan YF, Jones FC, McConnell E, Bryk J, Bünger L, Tautz D.

Curr Biol. 2012 May 8;22(9):794-800. doi: 10.1016/j.cub.2012.03.011. Epub 2012 Mar 22.


Micro-evolutionary divergence patterns of mandible shapes in wild house mouse (Mus musculus) populations.

Boell L, Tautz D.

BMC Evol Biol. 2011 Oct 18;11:306. doi: 10.1186/1471-2148-11-306.


The evolutionary origin of orphan genes.

Tautz D, Domazet-Lošo T.

Nat Rev Genet. 2011 Aug 31;12(10):692-702. doi: 10.1038/nrg3053. Review.


Not just another genome.

Tautz D.

BMC Biol. 2011 Feb 4;9:8. doi: 10.1186/1741-7007-9-8.


Rapid formation of distinct hybrid lineages after secondary contact of two fish species (Cottus sp.).

Stemshorn KC, Reed FA, Nolte AW, Tautz D.

Mol Ecol. 2011 Apr;20(7):1475-91. doi: 10.1111/j.1365-294X.2010.04997.x. Epub 2011 Jan 21.


A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns.

Domazet-Lošo T, Tautz D.

Nature. 2010 Dec 9;468(7325):815-8. doi: 10.1038/nature09632.


House mouse colonization patterns on the sub-Antarctic Kerguelen Archipelago suggest singular primary invasions and resilience against re-invasion.

Hardouin EA, Chapuis JL, Stevens MI, van Vuuren JB, Quillfeldt P, Scavetta RJ, Teschke M, Tautz D.

BMC Evol Biol. 2010 Oct 26;10:325. doi: 10.1186/1471-2148-10-325.


Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa.

Domazet-Loso T, Tautz D.

BMC Biol. 2010 May 21;8:66. doi: 10.1186/1741-7007-8-66.


Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow.

Wolf JB, Bayer T, Haubold B, Schilhabel M, Rosenstiel P, Tautz D.

Mol Ecol. 2010 Mar;19 Suppl 1:162-75. doi: 10.1111/j.1365-294X.2009.04471.x.


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