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Items: 13

1.

Quantification of Aneuploidy in Mammalian Systems.

van den Bos H, Bakker B, Taudt A, Guryev V, Colomé-Tatché M, Lansdorp PM, Foijer F, Spierings DCJ.

Methods Mol Biol. 2019;1896:159-190. doi: 10.1007/978-1-4939-8931-7_15.

PMID:
30474848
2.

METHimpute: imputation-guided construction of complete methylomes from WGBS data.

Taudt A, Roquis D, Vidalis A, Wardenaar R, Johannes F, Colome-Tatché-Tatché M.

BMC Genomics. 2018 Jun 7;19(1):444. doi: 10.1186/s12864-018-4641-x.

3.

Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni.

Roquis D, Taudt A, Geyer KK, Padalino G, Hoffmann KF, Holroyd N, Berriman M, Aliaga B, Chaparro C, Grunau C, Augusto RC.

PLoS Pathog. 2018 May 21;14(5):e1007066. doi: 10.1371/journal.ppat.1007066. eCollection 2018 May.

4.

MLL2 conveys transcription-independent H3K4 trimethylation in oocytes.

Hanna CW, Taudt A, Huang J, Gahurova L, Kranz A, Andrews S, Dean W, Stewart AF, Colomé-Tatché M, Kelsey G.

Nat Struct Mol Biol. 2018 Jan;25(1):73-82. doi: 10.1038/s41594-017-0013-5. Epub 2018 Jan 1.

PMID:
29323282
5.

Histone propionylation is a mark of active chromatin.

Kebede AF, Nieborak A, Shahidian LZ, Le Gras S, Richter F, Gómez DA, Baltissen MP, Meszaros G, Magliarelli HF, Taudt A, Margueron R, Colomé-Tatché M, Ricci R, Daujat S, Vermeulen M, Mittler G, Schneider R.

Nat Struct Mol Biol. 2017 Dec;24(12):1048-1056. doi: 10.1038/nsmb.3490. Epub 2017 Oct 23.

PMID:
29058708
6.

Copy number alterations assessed at the single-cell level revealed mono- and polyclonal seeding patterns of distant metastasis in a small-cell lung cancer patient.

Ferronika P, van den Bos H, Taudt A, Spierings DCJ, Saber A, Hiltermann TJN, Kok K, Porubsky D, van der Wekken AJ, Timens W, Foijer F, Colomé-Tatché M, Groen HJM, Lansdorp PM, van den Berg A.

Ann Oncol. 2017 Jul 1;28(7):1668-1670. doi: 10.1093/annonc/mdx182. No abstract available.

PMID:
28419234
7.

Erratum to: Single-cell whole genome sequencing reveals no evidence for common aneuploidy in normal and Alzheimer's disease neurons.

van den Bos H, Spierings DC, Taudt A, Bakker B, Porubský D, Falconer E, Novoa C, Halsema N, Kazemier HG, Hoekstra-Wakker K, Guryev V, den Dunnen WF, Foijer F, Colomé-Tatché M, Boddeke HW, Landsdorp PM.

Genome Biol. 2016 Jun 30;17(1):143. No abstract available.

8.

Single-cell whole genome sequencing reveals no evidence for common aneuploidy in normal and Alzheimer's disease neurons.

van den Bos H, Spierings DC, Taudt AS, Bakker B, Porubský D, Falconer E, Novoa C, Halsema N, Kazemier HG, Hoekstra-Wakker K, Guryev V, den Dunnen WF, Foijer F, Tatché MC, Boddeke HW, Lansdorp PM.

Genome Biol. 2016 May 31;17(1):116. doi: 10.1186/s13059-016-0976-2. Erratum in: Genome Biol. 2016 Jun 30;17(1):143.

9.

Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies.

Bakker B, Taudt A, Belderbos ME, Porubsky D, Spierings DC, de Jong TV, Halsema N, Kazemier HG, Hoekstra-Wakker K, Bradley A, de Bont ES, van den Berg A, Guryev V, Lansdorp PM, Colomé-Tatché M, Foijer F.

Genome Biol. 2016 May 31;17(1):115. doi: 10.1186/s13059-016-0971-7.

10.

Genetic sources of population epigenomic variation.

Taudt A, Colomé-Tatché M, Johannes F.

Nat Rev Genet. 2016 Jun;17(6):319-32. doi: 10.1038/nrg.2016.45. Epub 2016 May 9. Review.

PMID:
27156976
11.

Rate, spectrum, and evolutionary dynamics of spontaneous epimutations.

van der Graaf A, Wardenaar R, Neumann DA, Taudt A, Shaw RG, Jansen RC, Schmitz RJ, Colomé-Tatché M, Johannes F.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6676-81. doi: 10.1073/pnas.1424254112. Epub 2015 May 11.

12.

histoneHMM: Differential analysis of histone modifications with broad genomic footprints.

Heinig M, Colomé-Tatché M, Taudt A, Rintisch C, Schafer S, Pravenec M, Hubner N, Vingron M, Johannes F.

BMC Bioinformatics. 2015 Feb 22;16:60. doi: 10.1186/s12859-015-0491-6.

13.

Simulation of protein association: Kinetic pathways towards crystal contacts.

Taudt A, Arnold A, Pleiss J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Mar;91(3):033311. Epub 2015 Mar 30.

PMID:
25871250

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