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Items: 1 to 50 of 68

1.

Effect of the lipoxygenase inhibitor baicalein on bone tissue and bone healing in ovariectomized rats.

Saul D, Weber M, Zimmermann MH, Kosinsky RL, Hoffmann DB, Menger B, Taudien S, Lehmann W, Komrakova M, Sehmisch S.

Nutr Metab (Lond). 2019 Jan 11;16:4. doi: 10.1186/s12986-018-0327-2. eCollection 2019.

2.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

3.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

4.

Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses.

Penselin D, Münsterkötter M, Kirsten S, Felder M, Taudien S, Platzer M, Ashelford K, Paskiewicz KH, Harrison RJ, Hughes DJ, Wolf T, Shelest E, Graap J, Hoffmann J, Wenzel C, Wöltje N, King KM, Fitt BD, Güldener U, Avrova A, Knogge W.

BMC Genomics. 2016 Nov 22;17(1):953.

5.

Impaired Planar Germ Cell Division in the Testis, Caused by Dissociation of RHAMM from the Spindle, Results in Hypofertility and Seminoma.

Li H, Frappart L, Moll J, Winkler A, Kroll T, Hamann J, Kufferath I, Groth M, Taudien S, Schütte M, Yaspo ML, Heuer H, Lange BM, Platzer M, Zatloukal K, Herrlich P, Ploubidou A.

Cancer Res. 2016 Nov 1;76(21):6382-6395. Epub 2016 Aug 19.

6.

Genetic Factors of the Disease Course After Sepsis: Rare Deleterious Variants Are Predictive.

Taudien S, Lausser L, Giamarellos-Bourboulis EJ, Sponholz C, Schöneweck F, Felder M, Schirra LR, Schmid F, Gogos C, Groth S, Petersen BS, Franke A, Lieb W, Huse K, Zipfel PF, Kurzai O, Moepps B, Gierschik P, Bauer M, Scherag A, Kestler HA, Platzer M.

EBioMedicine. 2016 Oct;12:227-238. doi: 10.1016/j.ebiom.2016.08.037. Epub 2016 Sep 15.

7.

Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.

Scherag A, Schöneweck F, Kesselmeier M, Taudien S, Platzer M, Felder M, Sponholz C, Rautanen A, Hill AVS, Hinds CJ, Hossain H, Suttorp N, Kurzai O, Slevogt H, Giamarellos-Bourboulis EJ, Armaganidis A, Trips E, Scholz M, Brunkhorst FM.

EBioMedicine. 2016 Oct;12:239-246. doi: 10.1016/j.ebiom.2016.08.043. Epub 2016 Sep 15.

8.

The distribution of α-kleisin during meiosis in the holocentromeric plant Luzula elegans.

Ma W, Schubert V, Martis MM, Hause G, Liu Z, Shen Y, Conrad U, Shi W, Scholz U, Taudien S, Cheng Z, Houben A.

Chromosome Res. 2016 Sep;24(3):393-405. doi: 10.1007/s10577-016-9529-5. Epub 2016 Jun 13.

PMID:
27294972
9.

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N.

Plant Physiol. 2016 Jun;171(2):1113-27. doi: 10.1104/pp.16.00124. Epub 2016 Apr 14.

10.

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer KF, Platzer M, Stein N, Scholz U, Mascher M.

Plant Biotechnol J. 2016 Jul;14(7):1511-22. doi: 10.1111/pbi.12511. Epub 2016 Jan 23.

11.

Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish.

Reichwald K, Petzold A, Koch P, Downie BR, Hartmann N, Pietsch S, Baumgart M, Chalopin D, Felder M, Bens M, Sahm A, Szafranski K, Taudien S, Groth M, Arisi I, Weise A, Bhatt SS, Sharma V, Kraus JM, Schmid F, Priebe S, Liehr T, Görlach M, Than ME, Hiller M, Kestler HA, Volff JN, Schartl M, Cellerino A, Englert C, Platzer M.

Cell. 2015 Dec 3;163(6):1527-38. doi: 10.1016/j.cell.2015.10.071.

12.

Functional capacities of human IgM memory B cells in early inflammatory responses and secondary germinal center reactions.

Seifert M, Przekopowitz M, Taudien S, Lollies A, Ronge V, Drees B, Lindemann M, Hillen U, Engler H, Singer BB, Küppers R.

Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):E546-55. doi: 10.1073/pnas.1416276112. Epub 2015 Jan 26.

13.

Narrowing down the distal border of the copy number variable beta-defensin gene cluster on human 8p23.

Taudien S, Huse K, Groth M, Platzer M.

BMC Res Notes. 2014 Feb 19;7:93. doi: 10.1186/1756-0500-7-93.

14.

8p23 beta-defensin copy number determination by single-locus pseudogene-based paralog ratio tests risk bias due to low-frequency sequence variations.

Zhang X, Müller S, Möller M, Huse K, Taudien S, Book M, Stuber F, Platzer M, Groth M.

BMC Genomics. 2014 Jan 24;15:64. doi: 10.1186/1471-2164-15-64.

15.

BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower.

Livaja M, Wang Y, Wieckhorst S, Haseneyer G, Seidel M, Hahn V, Knapp SJ, Taudien S, Schön CC, Bauer E.

BMC Genomics. 2013 Sep 17;14:628. doi: 10.1186/1471-2164-14-628.

16.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N.

Plant Physiol. 2014 Jan;164(1):412-23. doi: 10.1104/pp.113.228213. Epub 2013 Nov 15.

17.

Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion.

Torriani SF, Penselin D, Knogge W, Felder M, Taudien S, Platzer M, McDonald BA, Brunner PC.

Fungal Genet Biol. 2014 Jan;62:34-42. doi: 10.1016/j.fgb.2013.11.001. Epub 2013 Nov 13.

18.

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, Muehlbauer GJ, Stein N.

Genome Biol. 2013 Jun 12;14(6):R58. doi: 10.1186/gb-2013-14-6-r58.

19.

The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels.

Petzold A, Reichwald K, Groth M, Taudien S, Hartmann N, Priebe S, Shagin D, Englert C, Platzer M.

BMC Genomics. 2013 Mar 16;14:185. doi: 10.1186/1471-2164-14-185.

20.

Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).

Lüpken T, Stein N, Perovic D, Habekuss A, Krämer I, Hähnel U, Steuernagel B, Scholz U, Zhou R, Ariyadasa R, Taudien S, Platzer M, Martis M, Mayer K, Friedt W, Ordon F.

Theor Appl Genet. 2013 May;126(5):1201-12. doi: 10.1007/s00122-013-2047-3. Epub 2013 Mar 2.

PMID:
23456135
21.

Association studies of the copy-number variable ß-defensin cluster on 8p23.1 in adenocarcinoma and chronic pancreatitis.

Taudien S, Gäbel G, Kuss O, Groth M, Grützmann R, Huse K, Kluttig A, Wolf A, Nothnagel M, Rosenstiel P, Greiser KH, Werdan K, Krawczak M, Pilarsky C, Platzer M.

BMC Res Notes. 2012 Nov 13;5:629. doi: 10.1186/1756-0500-5-629.

22.

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

Heckmann S, Macas J, Kumke K, Fuchs J, Schubert V, Ma L, Novák P, Neumann P, Taudien S, Platzer M, Houben A.

Plant J. 2013 Feb;73(4):555-65. doi: 10.1111/tpj.12054. Epub 2012 Dec 12.

23.

Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.

Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Bailey PC, O'Sullivan DM.

PLoS One. 2012;7(9):e45307. doi: 10.1371/journal.pone.0045307. Epub 2012 Sep 24.

24.

Comparative evaluation of establishing a human gut microbial community within rodent models.

Wos-Oxley M, Bleich A, Oxley AP, Kahl S, Janus LM, Smoczek A, Nahrstedt H, Pils MC, Taudien S, Platzer M, Hedrich HJ, Medina E, Pieper DH.

Gut Microbes. 2012 May-Jun;3(3):234-49. doi: 10.4161/gmic.19934. Epub 2012 May 1.

25.

Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1.

Fluch S, Kopecky D, Burg K, Šimková H, Taudien S, Petzold A, Kubaláková M, Platzer M, Berenyi M, Krainer S, Doležel J, Lelley T.

PLoS One. 2012;7(2):e30784. doi: 10.1371/journal.pone.0030784. Epub 2012 Feb 6.

26.

Sequencing of 21 varicella-zoster virus genomes reveals two novel genotypes and evidence of recombination.

Zell R, Taudien S, Pfaff F, Wutzler P, Platzer M, Sauerbrei A.

J Virol. 2012 Feb;86(3):1608-22. doi: 10.1128/JVI.06233-11. Epub 2011 Nov 30.

27.

Sequencing of BAC pools by different next generation sequencing platforms and strategies.

Taudien S, Steuernagel B, Ariyadasa R, Schulte D, Schmutzer T, Groth M, Felder M, Petzold A, Scholz U, Mayer KF, Stein N, Platzer M.

BMC Res Notes. 2011 Oct 14;4:411. doi: 10.1186/1756-0500-4-411.

28.

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schön CC, Taudien S, Scholz U, Stein N, Mayer KF, Bauer E.

BMC Plant Biol. 2011 Sep 28;11:131. doi: 10.1186/1471-2229-11-131.

29.

Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae.

Mameaux S, Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Jack P, Werner P, Gray JC, Greenland AJ, Powell W.

Plant Biotechnol J. 2012 Jan;10(1):67-82. doi: 10.1111/j.1467-7652.2011.00645.x. Epub 2011 Aug 15.

30.

A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome.

Parlange F, Oberhaensli S, Breen J, Platzer M, Taudien S, Simková H, Wicker T, Doležel J, Keller B.

Funct Integr Genomics. 2011 Dec;11(4):671-7. doi: 10.1007/s10142-011-0240-5. Epub 2011 Aug 2.

PMID:
21809124
31.

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives.

Wicker T, Mayer KF, Gundlach H, Martis M, Steuernagel B, Scholz U, Simková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Dolezel J, Keller B, Stein N.

Plant Cell. 2011 May;23(5):1706-18. doi: 10.1105/tpc.111.086629. Epub 2011 May 27.

32.

Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing.

Taudien S, Szafranski K, Felder M, Groth M, Huse K, Raffaelli F, Petzold A, Zhang X, Rosenstiel P, Hampe J, Schreiber S, Platzer M.

BMC Genomics. 2011 May 18;12(1):243. doi: 10.1186/1471-2164-12-243.

33.

Highly parallel gene-to-BAC addressing using microarrays.

Liu H, McNicol J, Bayer M, Morris JA, Cardle L, Marshall DF, Schulte D, Stein N, Shi BJ, Taudien S, Waugh R, Hedley PE.

Biotechniques. 2011 Mar;50(3):165-74. doi: 10.2144/000113627.

34.

Unlocking the barley genome by chromosomal and comparative genomics.

Mayer KF, Martis M, Hedley PE, Simková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Dolezel J, Waugh R, Stein N.

Plant Cell. 2011 Apr;23(4):1249-63. doi: 10.1105/tpc.110.082537. Epub 2011 Apr 5.

35.

The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny.

Hřibová E, Čížková J, Christelová P, Taudien S, de Langhe E, Doležel J.

PLoS One. 2011 Mar 22;6(3):e17863. doi: 10.1371/journal.pone.0017863.

36.

Linking chemical and microbial diversity in marine sponges: possible role for poribacteria as producers of methyl-branched fatty acids.

Hochmuth T, Niederkrüger H, Gernert C, Siegl A, Taudien S, Platzer M, Crews P, Hentschel U, Piel J.

Chembiochem. 2010 Dec 10;11(18):2572-8. doi: 10.1002/cbic.201000510.

PMID:
21077090
37.

Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing.

Taudien S, Groth M, Huse K, Petzold A, Szafranski K, Hampe J, Rosenstiel P, Schreiber S, Platzer M.

BMC Genomics. 2010 Apr 19;11:252. doi: 10.1186/1471-2164-11-252.

38.

A poke into the diversity and associations within human anterior nare microbial communities.

Wos-Oxley ML, Plumeier I, von Eiff C, Taudien S, Platzer M, Vilchez-Vargas R, Becker K, Pieper DH.

ISME J. 2010 Jul;4(7):839-51. doi: 10.1038/ismej.2010.15. Epub 2010 Feb 25.

PMID:
20182526
39.

The unique complexity of the CYP3A4 upstream region suggests a nongenetic explanation of its expression variability.

Qiu H, Mathäs M, Nestler S, Bengel C, Nem D, Gödtel-Armbrust U, Lang T, Taudien S, Burk O, Wojnowski L.

Pharmacogenet Genomics. 2010 Mar;20(3):167-78. doi: 10.1097/FPC.0b013e328336bbeb.

PMID:
20147837
40.

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley.

Steuernagel B, Taudien S, Gundlach H, Seidel M, Ariyadasa R, Schulte D, Petzold A, Felder M, Graner A, Scholz U, Mayer KF, Platzer M, Stein N.

BMC Genomics. 2009 Nov 20;10:547. doi: 10.1186/1471-2164-10-547.

41.

Gene content and virtual gene order of barley chromosome 1H.

Mayer KF, Taudien S, Martis M, Simková H, Suchánková P, Gundlach H, Wicker T, Petzold A, Felder M, Steuernagel B, Scholz U, Graner A, Platzer M, Dolezel J, Stein N.

Plant Physiol. 2009 Oct;151(2):496-505. doi: 10.1104/pp.109.142612. Epub 2009 Aug 19.

42.

A highly conserved retinoic acid responsive element controls wt1a expression in the zebrafish pronephros.

Bollig F, Perner B, Besenbeck B, Köthe S, Ebert C, Taudien S, Englert C.

Development. 2009 Sep;136(17):2883-92. doi: 10.1242/dev.031773.

43.

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley.

Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N.

Plant J. 2009 Sep;59(5):712-22. doi: 10.1111/j.1365-313X.2009.03911.x. Epub 2009 May 12.

44.

Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting.

Fisch KM, Gurgui C, Heycke N, van der Sar SA, Anderson SA, Webb VL, Taudien S, Platzer M, Rubio BK, Robinson SJ, Crews P, Piel J.

Nat Chem Biol. 2009 Jul;5(7):494-501. doi: 10.1038/nchembio.176.

PMID:
19448639
45.

High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research.

Reichwald K, Lauber C, Nanda I, Kirschner J, Hartmann N, Schories S, Gausmann U, Taudien S, Schilhabel MB, Szafranski K, Glöckner G, Schmid M, Cellerino A, Schartl M, Englert C, Platzer M.

Genome Biol. 2009 Feb 11;10(2):R16. doi: 10.1186/gb-2009-10-2-r16.

46.

Genetic variants of the copy number polymorphic beta-defensin locus are associated with sporadic prostate cancer.

Huse K, Taudien S, Groth M, Rosenstiel P, Szafranski K, Hiller M, Hampe J, Junker K, Schubert J, Schreiber S, Birkenmeier G, Krawczak M, Platzer M.

Tumour Biol. 2008;29(2):83-92. doi: 10.1159/000135688. Epub 2008 Jun 2.

PMID:
18515986
47.

High-resolution mapping of the 8p23.1 beta-defensin cluster reveals strictly concordant copy number variation of all genes.

Groth M, Szafranski K, Taudien S, Huse K, Mueller O, Rosenstiel P, Nygren AO, Schreiber S, Birkenmeier G, Platzer M.

Hum Mutat. 2008 Oct;29(10):1247-54. doi: 10.1002/humu.20751.

PMID:
18470942
48.

SNP and haplotype mapping for genetic analysis in the rat.

STAR Consortium, Saar K, Beck A, Bihoreau MT, Birney E, Brocklebank D, Chen Y, Cuppen E, Demonchy S, Dopazo J, Flicek P, Foglio M, Fujiyama A, Gut IG, Gauguier D, Guigo R, Guryev V, Heinig M, Hummel O, Jahn N, Klages S, Kren V, Kube M, Kuhl H, Kuramoto T, Kuroki Y, Lechner D, Lee YA, Lopez-Bigas N, Lathrop GM, Mashimo T, Medina I, Mott R, Patone G, Perrier-Cornet JA, Platzer M, Pravenec M, Reinhardt R, Sakaki Y, Schilhabel M, Schulz H, Serikawa T, Shikhagaie M, Tatsumoto S, Taudien S, Toyoda A, Voigt B, Zelenika D, Zimdahl H, Hubner N.

Nat Genet. 2008 May;40(5):560-6. doi: 10.1038/ng.124.

49.

Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection.

Nguyen T, Ishida K, Jenke-Kodama H, Dittmann E, Gurgui C, Hochmuth T, Taudien S, Platzer M, Hertweck C, Piel J.

Nat Biotechnol. 2008 Feb;26(2):225-33. doi: 10.1038/nbt1379. Epub 2008 Jan 27.

PMID:
18223641
50.

CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7.

Qiu H, Taudien S, Herlyn H, Schmitz J, Zhou Y, Chen G, Roberto R, Rocchi M, Platzer M, Wojnowski L.

Pharmacogenet Genomics. 2008 Jan;18(1):53-66. doi: 10.1097/FPC.0b013e3282f313f8.

PMID:
18216722

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