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Items: 37

1.

WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants.

Gentzbittel L, Ben C, Mazurier M, Shin MG, Lorenz T, Rickauer M, Marjoram P, Nuzhdin SV, Tatarinova TV.

Genome Biol. 2019 May 28;20(1):106. doi: 10.1186/s13059-019-1697-0.

2.

Computational models in genetics at BGRS-2018.

Orlov YL, Tatarinova TV, Kochetov AV.

BMC Genet. 2019 Mar 18;20(Suppl 1):28. doi: 10.1186/s12863-019-0724-1. No abstract available.

3.

Bioinformatics research at BGRS \ SB-2018.

Orlov YL, Hofestädt R, Tatarinova TV.

J Bioinform Comput Biol. 2019 Feb;17(1):1902001. doi: 10.1142/S0219720019020013. No abstract available.

PMID:
30866731
4.

Characterization of the mitochondrial genome of the MAX1 type of cytoplasmic male-sterile sunflower.

Makarenko MS, Usatov AV, Tatarinova TV, Azarin KV, Logacheva MD, Gavrilova VA, Horn R.

BMC Plant Biol. 2019 Feb 15;19(Suppl 1):51. doi: 10.1186/s12870-019-1637-x.

5.

Bioinformatics research at BGRS-2018.

Tatarinova TV, Chen M, Orlov YL.

BMC Bioinformatics. 2019 Feb 5;20(Suppl 1):33. doi: 10.1186/s12859-018-2566-7. No abstract available.

6.

Changes in Biological Pathways During 6,000 Years of Civilization in Europe.

Chekalin E, Rubanovich A, Tatarinova TV, Kasianov A, Bender N, Chekalina M, Staub K, Koepke N, Rühli F, Bruskin S, Morozova I.

Mol Biol Evol. 2019 Jan 1;36(1):127-140. doi: 10.1093/molbev/msy201.

PMID:
30376122
7.

PalmXplore: oil palm gene database.

Sanusi NSNM, Rosli R, Halim MAA, Chan KL, Nagappan J, Azizi N, Amiruddin N, Tatarinova TV, Low EL.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay095.

8.

Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017).

Orlov YL, Tatarinova TV, Zakhartsev MV, Kolchanov NA.

J Bioinform Comput Biol. 2018 Feb;16(1):1802001. doi: 10.1142/S0219720018020018. Epub 2018 Feb 13. No abstract available.

PMID:
29439645
9.

Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe.

Triska P, Chekanov N, Stepanov V, Khusnutdinova EK, Kumar GPA, Akhmetova V, Babalyan K, Boulygina E, Kharkov V, Gubina M, Khidiyatova I, Khitrinskaya I, Khrameeva EE, Khusainova R, Konovalova N, Litvinov S, Marusin A, Mazur AM, Puzyrev V, Ivanoshchuk D, Spiridonova M, Teslyuk A, Tsygankova S, Triska M, Trofimova N, Vajda E, Balanovsky O, Baranova A, Skryabin K, Tatarinova TV, Prokhortchouk E.

BMC Genet. 2017 Dec 28;18(Suppl 1):110. doi: 10.1186/s12863-017-0578-3.

10.

Genetics at Belyaev Conference - 2017: introductory note.

Orlov YL, Baranova AV, Tatarinova TV, Kolchanov NA.

BMC Genet. 2017 Dec 28;18(Suppl 1):116. doi: 10.1186/s12863-017-0577-4. No abstract available.

11.

Nucleotide patterns aiding in prediction of eukaryotic promoters.

Triska M, Solovyev V, Baranova A, Kel A, Tatarinova TV.

PLoS One. 2017 Nov 15;12(11):e0187243. doi: 10.1371/journal.pone.0187243. eCollection 2017.

12.

Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory.

Ponomarenko P, Ryutov A, Maglinte DT, Baranova A, Tatarinova TV, Gai X.

BMC Med Genomics. 2017 Oct 6;10(1):57. doi: 10.1186/s12920-017-0297-7.

13.

Evidence-based gene models for structural and functional annotations of the oil palm genome.

Chan KL, Tatarinova TV, Rosli R, Amiruddin N, Azizi N, Halim MAA, Sanusi NSNM, Jayanthi N, Ponomarenko P, Triska M, Solovyev V, Firdaus-Raih M, Sambanthamurthi R, Murphy D, Low EL.

Biol Direct. 2017 Sep 8;12(1):21. doi: 10.1186/s13062-017-0191-4.

14.

Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments.

Zolotarenko A, Chekalin E, Mehta R, Baranova A, Tatarinova TV, Bruskin S.

Methods Mol Biol. 2017;1613:355-370. doi: 10.1007/978-1-4939-7027-8_14.

PMID:
28849568
15.

Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer.

Triska M, Ivliev A, Nikolsky Y, Tatarinova TV.

Methods Mol Biol. 2017;1613:291-310. doi: 10.1007/978-1-4939-7027-8_11.

PMID:
28849565
16.

Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data.

Chan KL, Rosli R, Tatarinova TV, Hogan M, Firdaus-Raih M, Low EL.

BMC Bioinformatics. 2017 Jan 27;18(Suppl 1):1426. doi: 10.1186/s12859-016-1426-6.

17.

Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis.

Zolotarenko A, Chekalin E, Mesentsev A, Kiseleva L, Gribanova E, Mehta R, Baranova A, Tatarinova TV, Piruzian ES, Bruskin S.

Exp Mol Med. 2016 Nov 4;48(11):e268. doi: 10.1038/emm.2016.97.

18.

Nucleotide diversity analysis highlights functionally important genomic regions.

Tatarinova TV, Chekalin E, Nikolsky Y, Bruskin S, Chebotarov D, McNally KL, Alexandrov N.

Sci Rep. 2016 Oct 24;6:35730. doi: 10.1038/srep35730.

19.

Toward high-resolution population genomics using archaeological samples.

Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, Ponomarenko P, Klyuchnikov V, ArunKumar G, Prokhortchouk E, Gankin Y, Rogaev E, Nikolsky Y, Baranova A, Elhaik E, Tatarinova TV.

DNA Res. 2016 Aug;23(4):295-310. doi: 10.1093/dnares/dsw029. Epub 2016 Jul 19. Review.

20.

A Rapid and Sensitive Next-Generation Sequencing Method to Detect RB1 Mutations Improves Care for Retinoblastoma Patients and Their Families.

Li WL, Buckley J, Sanchez-Lara PA, Maglinte DT, Viduetsky L, Tatarinova TV, Aparicio JG, Kim JW, Au M, Ostrow D, Lee TC, O'Gorman M, Judkins A, Cobrinik D, Triche TJ.

J Mol Diagn. 2016 Jul;18(4):480-93. doi: 10.1016/j.jmoldx.2016.02.006. Epub 2016 May 4.

21.

Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.

Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altınışık NE, Flegontova O, Gelfand MS, Gerasimov ES, Khrameeva EE, Konovalova OP, Neretina T, Nikolsky YV, Starostin G, Stepanova VV, Travinsky IV, Tříska M, Tříska P, Tatarinova TV.

Sci Rep. 2016 Feb 11;6:20768. doi: 10.1038/srep20768.

22.

The mysterious orphans of Mycoplasmataceae.

Tatarinova TV, Lysnyansky I, Nikolsky YV, Bolshoy A.

Biol Direct. 2016 Jan 8;11(1):2. doi: 10.1186/s13062-015-0104-3.

23.

Differential Evolution approach to detect recent admixture.

Kozlov K, Chebotarev D, Hassan M, Triska M, Triska P, Flegontov P, Tatarinova TV.

BMC Genomics. 2015;16 Suppl 8:S9. doi: 10.1186/1471-2164-16-S8-S9. Epub 2015 Jun 18.

24.

Genome-wide signatures of male-mediated migration shaping the Indian gene pool.

ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R; Genographic Consortium.

J Hum Genet. 2015 Sep;60(9):493-9.

PMID:
25994871
25.

Reply to Mendez et al: the 'extremely ancient' chromosome that still isn't.

Elhaik E, Tatarinova TV, Klyosov AA, Graur D.

Eur J Hum Genet. 2015 May;23(5):567-8. doi: 10.1038/ejhg.2014.227. Epub 2014 Oct 15. No abstract available.

26.

The 'extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the Y chromosome.

Elhaik E, Tatarinova TV, Klyosov AA, Graur D.

Eur J Hum Genet. 2014 Sep;22(9):1111-6. doi: 10.1038/ejhg.2013.303. Epub 2014 Jan 22.

27.

Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa.

Elhaik E, Pellegrini M, Tatarinova TV.

BMC Bioinformatics. 2014 Jan 21;15:23. doi: 10.1186/1471-2105-15-23.

28.

Tumor suppressors status in cancer cell line Encyclopedia.

Sonkin D, Hassan M, Murphy DJ, Tatarinova TV.

Mol Oncol. 2013 Aug;7(4):791-8. doi: 10.1016/j.molonc.2013.04.001. Epub 2013 Apr 11.

29.

Evaluation of codon biology in citrus and Poncirus trifoliata based on genomic features and frame corrected expressed sequence tags.

Ahmad T, Sablok G, Tatarinova TV, Xu Q, Deng XX, Guo WW.

DNA Res. 2013 Apr;20(2):135-50. doi: 10.1093/dnares/dss039. Epub 2013 Jan 11.

30.

Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages.

Sablok G, Luo C, Lee WS, Rahman F, Tatarinova TV, Harikrishna JA, Luo Z.

3 Biotech. 2011 Jul;1(1):35-45. Epub 2011 Apr 21.

31.

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua.

Pérez-Quintero AL, Sablok G, Tatarinova TV, Conesa A, Kuo J, López C.

Biotechnol Lett. 2012 Apr;34(4):737-45. doi: 10.1007/s10529-011-0808-0. Epub 2011 Dec 9.

PMID:
22160362
32.

Towards the integration of genomics, epidemiological and clinical data.

Solovyev VV, Tatarinova TV.

Genome Med. 2011 Jul 27;3(7):48. doi: 10.1186/gm264.

33.

Artificial microRNAs (amiRNAs) engineering - On how microRNA-based silencing methods have affected current plant silencing research.

Sablok G, Pérez-Quintero AL, Hassan M, Tatarinova TV, López C.

Biochem Biophys Res Commun. 2011 Mar 18;406(3):315-9. doi: 10.1016/j.bbrc.2011.02.045. Epub 2011 Feb 15. Review.

PMID:
21329663
34.

Synonymous codon usage, GC(3), and evolutionary patterns across plastomes of three pooid model species: emerging grass genome models for monocots.

Sablok G, Nayak KC, Vazquez F, Tatarinova TV.

Mol Biotechnol. 2011 Oct;49(2):116-28. doi: 10.1007/s12033-011-9383-9.

PMID:
21308422
35.

GC3 biology in corn, rice, sorghum and other grasses.

Tatarinova TV, Alexandrov NN, Bouck JB, Feldmann KA.

BMC Genomics. 2010 May 16;11:308. doi: 10.1186/1471-2164-11-308.

36.

Insights into corn genes derived from large-scale cDNA sequencing.

Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA.

Plant Mol Biol. 2009 Jan;69(1-2):179-94. doi: 10.1007/s11103-008-9415-4. Epub 2008 Oct 21.

37.

Continuum excitons in the fractional-quantum-Hall-effect regime: Steps in the filling-factor dependence of the energy.

Tatarinova TV, Rashba EI, Efros AL.

Phys Rev B Condens Matter. 1994 Dec 15;50(23):17349-17356. No abstract available.

PMID:
9976138

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