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Items: 1 to 50 of 212

1.

Strength of the association between antibiotic use and hemolytic uremic syndrome following Escherichia coli O157:H7 infection varies with case definition.

Tarr GAM, Oltean HN, Phipps AI, Rabinowitz P, Tarr PI.

Int J Med Microbiol. 2018 Oct;308(7):921-926. doi: 10.1016/j.ijmm.2018.06.009. Epub 2018 Jun 26.

PMID:
30257808
2.

Gut Sphingolipid Composition as a Prelude to Necrotizing Enterocolitis.

Rusconi B, Jiang X, Sidhu R, Ory DS, Warner BB, Tarr PI.

Sci Rep. 2018 Jul 20;8(1):10984. doi: 10.1038/s41598-018-28862-4.

3.

Relationship between enteric pathogens and acute gastroenteritis disease severity: a prospective cohort study.

Xie J, Nettel-Aguirre A, Lee BE, Chui L, Pang XL, Zhuo R, Parsons B, Vanderkooi OG, Tarr PI, Ali S, Dickinson JA, Hagen E, Svenson LW, MacDonald SE, Drews SJ, Tellier R, Graham T, Lavoie M, MacDonald J, Freedman SB; Pediatric Emergency Research Canada (PERC) and the Alberta Provincial Pediatric EnTeric Infection TEam (APPETITE Team).

Clin Microbiol Infect. 2018 Jun 28. pii: S1198-743X(18)30479-8. doi: 10.1016/j.cmi.2018.06.016. [Epub ahead of print]

PMID:
29964235
4.

Importance of case age in the purported association between phylogenetics and hemolytic uremic syndrome in Escherichia coli O157:H7 infections.

Tarr GAM, Shringi S, Oltean HN, Mayer J, Rabinowitz P, Wakefield J, Tarr PI, Besser TE, Phipps AI.

Epidemiol Infect. 2018 Sep;146(12):1550-1555. doi: 10.1017/S0950268818001632. Epub 2018 Jun 19.

PMID:
29914582
5.

Clinical and Laboratory Predictors of Shiga Toxin-Producing Escherichia coli Infection in Children With Bloody Diarrhea.

McKee RS, Tarr PI, Dietzen DJ, Chawla R, Schnadower D.

J Pediatric Infect Dis Soc. 2018 Aug 17;7(3):e116-e122. doi: 10.1093/jpids/piy025.

PMID:
29617871
6.

Carriage of Cronobacter sakazakii in the Very Preterm Infant Gut.

Chandrasekaran S, Burnham CD, Warner BB, Tarr PI, Wylie TN.

Clin Infect Dis. 2018 Jul 2;67(2):269-274. doi: 10.1093/cid/ciy062.

PMID:
29394356
7.

Geogenomic Segregation and Temporal Trends of Human Pathogenic Escherichia coli O157:H7, Washington, USA, 2005-20141.

Tarr GAM, Shringi S, Phipps AI, Besser TE, Mayer J, Oltean HN, Wakefield J, Tarr PI, Rabinowitz P.

Emerg Infect Dis. 2018 Jan;24(1):32-39. doi: 10.3201/eid2401.170851.

8.

Microbial antigen encounter during a preweaning interval is critical for tolerance to gut bacteria.

Knoop KA, Gustafsson JK, McDonald KG, Kulkarni DH, Coughlin PE, McCrate S, Kim D, Hsieh CS, Hogan SP, Elson CO, Tarr PI, Newberry RD.

Sci Immunol. 2017 Dec 15;2(18). pii: eaao1314. doi: 10.1126/sciimmunol.aao1314.

PMID:
29246946
9.

2017 Infectious Diseases Society of America Clinical Practice Guidelines for the Diagnosis and Management of Infectious Diarrhea.

Shane AL, Mody RK, Crump JA, Tarr PI, Steiner TS, Kotloff K, Langley JM, Wanke C, Warren CA, Cheng AC, Cantey J, Pickering LK.

Clin Infect Dis. 2017 Nov 29;65(12):1963-1973. doi: 10.1093/cid/cix959.

PMID:
29194529
10.

2017 Infectious Diseases Society of America Clinical Practice Guidelines for the Diagnosis and Management of Infectious Diarrhea.

Shane AL, Mody RK, Crump JA, Tarr PI, Steiner TS, Kotloff K, Langley JM, Wanke C, Warren CA, Cheng AC, Cantey J, Pickering LK.

Clin Infect Dis. 2017 Nov 29;65(12):e45-e80. doi: 10.1093/cid/cix669.

PMID:
29053792
11.

Environmental Enteric Dysfunction: A Case Definition for Intervention Trials.

Denno DM, Tarr PI, Nataro JP.

Am J Trop Med Hyg. 2017 Dec;97(6):1643-1646. doi: 10.4269/ajtmh.17-0183. Epub 2017 Sep 21. No abstract available.

12.

Re: Fruit Juice and Child Health.

Freedman SB, Tarr PI, Mahajan P.

Pediatrics. 2017 Oct;140(4). pii: e20172301A. doi: 10.1542/peds.2017-2301A. No abstract available.

13.

Randomised controlled trial of Lactobacillus rhamnosus (LGG) versus placebo in children presenting to the emergency department with acute gastroenteritis: the PECARN probiotic study protocol.

Schnadower D, Tarr PI, Casper TC, Gorelick MH, Dean MJ, O'Connell KJ, Mahajan P, Chun TH, Bhatt SR, Roskind CG, Powell EC, Rogers AJ, Vance C, Sapien RE, Gao F, Freedman SB.

BMJ Open. 2017 Sep 24;7(9):e018115. doi: 10.1136/bmjopen-2017-018115.

14.

Serologic Evidence of Gut-driven Systemic Inflammation in Juvenile Idiopathic Arthritis.

Fotis L, Shaikh N, Baszis KW, Samson CM, Lev-Tzion R, French AR, Tarr PI.

J Rheumatol. 2017 Nov;44(11):1624-1631. doi: 10.3899/jrheum.161589. Epub 2017 Sep 15.

PMID:
28916545
15.

Measurement of gut permeability using fluorescent tracer agent technology.

Dorshow RB, Hall-Moore C, Shaikh N, Talcott MR, Faubion WA, Rogers TE, Shieh JJ, Debreczeny MP, Johnson JR, Dyer RB, Singh RJ, Tarr PI.

Sci Rep. 2017 Sep 7;7(1):10888. doi: 10.1038/s41598-017-09971-y.

16.

Impaired Barrier Function and Autoantibody Generation in Malnutrition Enteropathy in Zambia.

Amadi B, Besa E, Zyambo K, Kaonga P, Louis-Auguste J, Chandwe K, Tarr PI, Denno DM, Nataro JP, Faubion W, Sailer A, Yeruva S, Brantner T, Murray J, Prendergast AJ, Turner JR, Kelly P.

EBioMedicine. 2017 Aug;22:191-199. doi: 10.1016/j.ebiom.2017.07.017. Epub 2017 Jul 19.

17.

Enteropathogen detection in children with diarrhoea, or vomiting, or both, comparing rectal flocked swabs with stool specimens: an outpatient cohort study.

Freedman SB, Xie J, Nettel-Aguirre A, Lee B, Chui L, Pang XL, Zhuo R, Parsons B, Dickinson JA, Vanderkooi OG, Ali S, Osterreicher L, Lowerison K, Tarr PI; Alberta Provincial Pediatric EnTeric Infection TEam (APPETITE).

Lancet Gastroenterol Hepatol. 2017 Sep;2(9):662-669. doi: 10.1016/S2468-1253(17)30160-7. Epub 2017 Jul 14.

PMID:
28712662
18.

Early pregnancy vaginal microbiome trends and preterm birth.

Stout MJ, Zhou Y, Wylie KM, Tarr PI, Macones GA, Tuuli MG.

Am J Obstet Gynecol. 2017 Sep;217(3):356.e1-356.e18. doi: 10.1016/j.ajog.2017.05.030. Epub 2017 May 23.

19.

Independence of gut bacterial content and neonatal necrotizing enterocolitis severity.

Barron LK, Warner BB, Tarr PI, Shannon WD, Deych E, Warner BW.

J Pediatr Surg. 2017 Jun;52(6):993-998. doi: 10.1016/j.jpedsurg.2017.03.029. Epub 2017 Apr 5.

20.

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis.

Pammi M, Cope J, Tarr PI, Warner BB, Morrow AL, Mai V, Gregory KE, Kroll JS, McMurtry V, Ferris MJ, Engstrand L, Lilja HE, Hollister EB, Versalovic J, Neu J.

Microbiome. 2017 Mar 9;5(1):31. doi: 10.1186/s40168-017-0248-8. Review.

21.

Case-Control Assessment of the Roles of Noroviruses, Human Bocaviruses 2, 3, and 4, and Novel Polyomaviruses and Astroviruses in Acute Childhood Diarrhea.

Melamed R, Storch GA, Holtz LR, Klein EJ, Herrin B, Tarr PI, Denno DM.

J Pediatric Infect Dis Soc. 2017 Sep 1;6(3):e49-e54. doi: 10.1093/jpids/piw083.

PMID:
28186546
22.

Environmental Enteric Dysfunction and the Fecal Microbiota in Malawian Children.

Ordiz MI, Stephenson K, Agapova S, Wylie KM, Maleta K, Martin J, Trehan I, Tarr PI, Manary MJ.

Am J Trop Med Hyg. 2017 Feb 8;96(2):473-476. doi: 10.4269/ajtmh.16-0617. Epub 2016 Dec 12.

23.

Associations Between Hydration Status, Intravenous Fluid Administration, and Outcomes of Patients Infected With Shiga Toxin-Producing Escherichia coli: A Systematic Review and Meta-analysis.

Grisaru S, Xie J, Samuel S, Hartling L, Tarr PI, Schnadower D, Freedman SB; Alberta Provincial Pediatric Enteric Infection Team.

JAMA Pediatr. 2017 Jan 1;171(1):68-76. doi: 10.1001/jamapediatrics.2016.2952. Review.

PMID:
27893870
24.

Environmental Enteric Dysfunction Is Associated With Poor Linear Growth and Can Be Identified by Host Fecal mRNAs.

Ordiz MI, Shaikh N, Trehan I, Maleta K, Stauber J, Shulman R, Devaraj S, Tarr PI, Manary MJ.

J Pediatr Gastroenterol Nutr. 2016 Nov;63(5):453-459.

25.

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome.

Gibson MK, Wang B, Ahmadi S, Burnham CA, Tarr PI, Warner BB, Dantas G.

Nat Microbiol. 2016 Mar 7;1:16024. doi: 10.1038/nmicrobiol.2016.24.

26.

Antibiotic perturbation of the preterm infant gut microbiome and resistome.

Gasparrini AJ, Crofts TS, Gibson MK, Tarr PI, Warner BB, Dantas G.

Gut Microbes. 2016 Sep 2;7(5):443-9. doi: 10.1080/19490976.2016.1218584. Epub 2016 Jul 29. Review.

27.

Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.

Rusconi B, Sanjar F, Koenig SS, Mammel MK, Tarr PI, Eppinger M.

Front Microbiol. 2016 Jun 30;7:985. doi: 10.3389/fmicb.2016.00985. eCollection 2016.

28.

Gut bacteria and late-onset neonatal bloodstream infections in preterm infants.

Tarr PI, Warner BB.

Semin Fetal Neonatal Med. 2016 Dec;21(6):388-393. doi: 10.1016/j.siny.2016.06.002. Epub 2016 Jun 23. Review.

PMID:
27345372
29.

Necrotizing enterocolitis and preterm infant gut bacteria.

Warner BB, Tarr PI.

Semin Fetal Neonatal Med. 2016 Dec;21(6):394-399. doi: 10.1016/j.siny.2016.06.001. Epub 2016 Jun 22. Review.

30.

Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice.

Planer JD, Peng Y, Kau AL, Blanton LV, Ndao IM, Tarr PI, Warner BB, Gordon JI.

Nature. 2016 Jun 9;534(7606):263-6. doi: 10.1038/nature17940. Epub 2016 May 25.

31.

Droplet digital PCR quantifies host inflammatory transcripts in feces reliably and reproducibly.

Stauber J, Shaikh N, Ordiz MI, Tarr PI, Manary MJ.

Cell Immunol. 2016 May;303:43-9. doi: 10.1016/j.cellimm.2016.03.007. Epub 2016 Apr 6.

32.

Environmental Enteric Dysfunction Includes a Broad Spectrum of Inflammatory Responses and Epithelial Repair Processes.

Yu J, Ordiz MI, Stauber J, Shaikh N, Trehan I, Barnell E, Head RD, Maleta K, Tarr PI, Manary MJ.

Cell Mol Gastroenterol Hepatol. 2015 Dec 11;2(2):158-174.e1. eCollection 2016 Feb.

33.

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study.

Warner BB, Deych E, Zhou Y, Hall-Moore C, Weinstock GM, Sodergren E, Shaikh N, Hoffmann JA, Linneman LA, Hamvas A, Khanna G, Rouggly-Nickless LC, Ndao IM, Shands BA, Escobedo M, Sullivan JE, Radmacher PG, Shannon WD, Tarr PI.

Lancet. 2016 May 7;387(10031):1928-36. doi: 10.1016/S0140-6736(16)00081-7. Epub 2016 Mar 9.

34.

Shiga Toxin-Producing Escherichia coli Infection, Antibiotics, and Risk of Developing Hemolytic Uremic Syndrome: A Meta-analysis.

Freedman SB, Xie J, Neufeld MS, Hamilton WL, Hartling L, Tarr PI; Alberta Provincial Pediatric Enteric Infection Team (APPETITE), Nettel-Aguirre A, Chuck A, Lee B, Johnson D, Currie G, Talbot J, Jiang J, Dickinson J, Kellner J, MacDonald J, Svenson L, Chui L, Louie M, Lavoie M, Eltorki M, Vanderkooi O, Tellier R, Ali S, Drews S, Graham T, Pang XL.

Clin Infect Dis. 2016 May 15;62(10):1251-1258. doi: 10.1093/cid/ciw099. Epub 2016 Feb 24. Review.

35.

Early life dynamics of the human gut virome and bacterial microbiome in infants.

Lim ES, Zhou Y, Zhao G, Bauer IK, Droit L, Ndao IM, Warner BB, Tarr PI, Wang D, Holtz LR.

Nat Med. 2015 Oct;21(10):1228-34. doi: 10.1038/nm.3950. Epub 2015 Sep 14.

36.

The effect of dietary resistant starch type 2 on the microbiota and markers of gut inflammation in rural Malawi children.

Ordiz MI, May TD, Mihindukulasuriya K, Martin J, Crowley J, Tarr PI, Ryan K, Mortimer E, Gopalsamy G, Maleta K, Mitreva M, Young G, Manary MJ.

Microbiome. 2015 Sep 3;3:37. doi: 10.1186/s40168-015-0102-9.

37.

Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.

Zhang Y, Rowehl L, Krumsiek JM, Orner EP, Shaikh N, Tarr PI, Sodergren E, Weinstock GM, Boedeker EC, Xiong X, Parkinson J, Frank DN, Li E, Gathungu G.

PLoS One. 2015 Jul 28;10(7):e0134759. doi: 10.1371/journal.pone.0134759. eCollection 2015. No abstract available.

38.

Erratum: Gut resistome development in healthy twin pairs in the first year of life.

Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao IM, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G.

Microbiome. 2015 Jul 23;3:29. doi: 10.1186/s40168-015-0095-4. eCollection 2015.

39.

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.

Zhang Y, Rowehl L, Krumsiek JM, Orner EP, Shaikh N, Tarr PI, Sodergren E, Weinstock GM, Boedeker EC, Xiong X, Parkinson J, Frank DN, Li E, Gathungu G.

PLoS One. 2015 Jun 30;10(6):e0130902. doi: 10.1371/journal.pone.0130902. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0134759.

40.

Gut resistome development in healthy twin pairs in the first year of life.

Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao MI, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G.

Microbiome. 2015 Jun 25;3:27. doi: 10.1186/s40168-015-0090-9. eCollection 2015. Erratum in: Microbiome. 2015;3:29.

41.

Impact of neonatal intensive care bed configuration on rates of late-onset bacterial sepsis and methicillin-resistant Staphylococcus aureus colonization.

Julian S, Burnham CA, Sellenriek P, Shannon WD, Hamvas A, Tarr PI, Warner BB.

Infect Control Hosp Epidemiol. 2015 Oct;36(10):1173-82. doi: 10.1017/ice.2015.144. Epub 2015 Jun 25.

42.

Shiga Toxin/Verocytotoxin-Producing Escherichia coli Infections: Practical Clinical Perspectives.

Davis TK, Van De Kar NC, Tarr PI.

Microbiol Spectr. 2014 Aug;2(4):EHEC-0025-2014. doi: 10.1128/microbiolspec.EHEC-0025-2014. Review.

PMID:
26104210
43.

Gut Colonization of Healthy Children and Their Mothers With Pathogenic Ciprofloxacin-Resistant Escherichia coli.

Gurnee EA, Ndao IM, Johnson JR, Johnston BD, Gonzalez MD, Burnham CA, Hall-Moore CM, McGhee JE, Mellmann A, Warner BB, Tarr PI.

J Infect Dis. 2015 Dec 15;212(12):1862-8. doi: 10.1093/infdis/jiv278. Epub 2015 May 12.

44.

Real-Time PCR Assay for Detection and Differentiation of Shiga Toxin-Producing Escherichia coli from Clinical Samples.

Qin X, Klein EJ, Galanakis E, Thomas AA, Stapp JR, Rich S, Buccat AM, Tarr PI.

J Clin Microbiol. 2015 Jul;53(7):2148-53. doi: 10.1128/JCM.00115-15. Epub 2015 Apr 29.

45.

Agitation down-regulates immunoglobulin binding protein EibG expression in Shiga toxin-producing Escherichia coli (STEC).

Kuczius T, Zhang W, Merkel V, Mellmann A, Tarr PI, Karch H.

PLoS One. 2015 Mar 6;10(3):e0119583. doi: 10.1371/journal.pone.0119583. eCollection 2015.

46.

Use of the lactulose to mannitol ratio to evaluate childhood environmental enteric dysfunction: a systematic review.

Denno DM, VanBuskirk K, Nelson ZC, Musser CA, Hay Burgess DC, Tarr PI.

Clin Infect Dis. 2014 Nov 1;59 Suppl 4:S213-9. doi: 10.1093/cid/ciu541. Review.

PMID:
25305289
47.

Environmental enteric dysfunction: pathogenesis, diagnosis, and clinical consequences.

Keusch GT, Denno DM, Black RE, Duggan C, Guerrant RL, Lavery JV, Nataro JP, Rosenberg IH, Ryan ET, Tarr PI, Ward H, Bhutta ZA, Coovadia H, Lima A, Ramakrishna B, Zaidi AK, Hay Burgess DC, Brewer T.

Clin Infect Dis. 2014 Nov 1;59 Suppl 4:S207-12. doi: 10.1093/cid/ciu485. Review.

48.

Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study.

Zhou Y, Burnham CA, Hink T, Chen L, Shaikh N, Wollam A, Sodergren E, Weinstock GM, Tarr PI, Dubberke ER.

J Clin Microbiol. 2014 Dec;52(12):4260-6. doi: 10.1128/JCM.02115-14. Epub 2014 Oct 1.

49.

Small bowel resection induces long-term changes in the enteric microbiota of mice.

Sommovilla J, Zhou Y, Sun RC, Choi PM, Diaz-Miron J, Shaikh N, Sodergren E, Warner BB, Weinstock GM, Tarr PI, Warner BW.

J Gastrointest Surg. 2015 Jan;19(1):56-64; discussion 64. doi: 10.1007/s11605-014-2631-0. Epub 2014 Sep 3.

50.

Patterned progression of bacterial populations in the premature infant gut.

La Rosa PS, Warner BB, Zhou Y, Weinstock GM, Sodergren E, Hall-Moore CM, Stevens HJ, Bennett WE Jr, Shaikh N, Linneman LA, Hoffmann JA, Hamvas A, Deych E, Shands BA, Shannon WD, Tarr PI.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12522-7. doi: 10.1073/pnas.1409497111. Epub 2014 Aug 11. Erratum in: Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17336.

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