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Items: 38

1.

Draft Genome Sequences of Eight Vibrio sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae.

Liang K, Islam MT, Hussain N, Winkjer NS, Im MS, Rowe LA, Tarr CL, Boucher Y.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01473-18. doi: 10.1128/MRA.01473-18. eCollection 2019 Jan.

2.

Draft Genome Sequences of Nine Vibrio sp. Isolates from across the United States Closely Related to Vibrio cholerae.

Islam MT, Liang K, Im MS, Winkjer J, Busby S, Tarr CL, Boucher Y.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e00965-18. doi: 10.1128/MRA.00965-18. eCollection 2018 Nov.

3.

Integrated view of Vibrio cholerae in the Americas.

Domman D, Quilici ML, Dorman MJ, Njamkepo E, Mutreja A, Mather AE, Delgado G, Morales-Espinosa R, Grimont PAD, Lizárraga-Partida ML, Bouchier C, Aanensen DM, Kuri-Morales P, Tarr CL, Dougan G, Parkhill J, Campos J, Cravioto A, Weill FX, Thomson NR.

Science. 2017 Nov 10;358(6364):789-793. doi: 10.1126/science.aao2136.

PMID:
29123068
4.

Complete Genome Sequence of Vibrio sp. Strain 2521-89, a Close Relative of Vibrio cholerae Isolated from Lake Water in New Mexico, USA.

Liang K, Orata FD, Winkjer NS, Rowe LA, Tarr CL, Boucher Y.

Genome Announc. 2017 Aug 31;5(35). pii: e00905-17. doi: 10.1128/genomeA.00905-17.

5.

Notes from the Field: Cronobacter sakazakii Infection Associated with Feeding Extrinsically Contaminated Expressed Human Milk to a Premature Infant - Pennsylvania, 2016.

Bowen A, Wiesenfeld HC, Kloesz JL, Pasculle AW, Nowalk AJ, Brink L, Elliot E, Martin H, Tarr CL.

MMWR Morb Mortal Wkly Rep. 2017 Jul 21;66(28):761-762. doi: 10.15585/mmwr.mm6628a5. No abstract available.

6.

Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to Cheese, United States, 2013.

Chen Y, Luo Y, Carleton H, Timme R, Melka D, Muruvanda T, Wang C, Kastanis G, Katz LS, Turner L, Fritzinger A, Moore T, Stones R, Blankenship J, Salter M, Parish M, Hammack TS, Evans PS, Tarr CL, Allard MW, Strain EA, Brown EW.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e00633-17. doi: 10.1128/AEM.00633-17. Print 2017 Aug 1.

7.

Metagenomics of Two Severe Foodborne Outbreaks Provides Diagnostic Signatures and Signs of Coinfection Not Attainable by Traditional Methods.

Huang AD, Luo C, Pena-Gonzalez A, Weigand MR, Tarr CL, Konstantinidis KT.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02577-16. doi: 10.1128/AEM.02577-16. Print 2017 Feb 1.

8.

Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis.

Orata FD, Xu Y, Gladney LM, Rishishwar L, Case RJ, Boucher Y, Jordan IK, Tarr CL.

Int J Syst Evol Microbiol. 2016 Oct;66(10):4148-4155. doi: 10.1099/ijsem.0.001327. Epub 2016 Jul 27.

PMID:
27468862
9.

Diversity of Clinical and Environmental Isolates of Vibrio cholerae in Natural Transformation and Contact-Dependent Bacterial Killing Indicative of Type VI Secretion System Activity.

Bernardy EE, Turnsek MA, Wilson SK, Tarr CL, Hammer BK.

Appl Environ Microbiol. 2016 Apr 18;82(9):2833-2842. doi: 10.1128/AEM.00351-16. Print 2016 May.

10.

Determination of Evolutionary Relationships of Outbreak-Associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b by Whole-Genome Sequencing.

Bergholz TM, den Bakker HC, Katz LS, Silk BJ, Jackson KA, Kucerova Z, Joseph LA, Turnsek M, Gladney LM, Halpin JL, Xavier K, Gossack J, Ward TJ, Frace M, Tarr CL.

Appl Environ Microbiol. 2015 Nov 20;82(3):928-38. doi: 10.1128/AEM.02440-15. Print 2016 Feb 1.

11.

The Dynamics of Genetic Interactions between Vibrio metoecus and Vibrio cholerae, Two Close Relatives Co-Occurring in the Environment.

Orata FD, Kirchberger PC, Méheust R, Barlow EJ, Tarr CL, Boucher Y.

Genome Biol Evol. 2015 Oct 9;7(10):2941-54. doi: 10.1093/gbe/evv193.

12.

Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.

Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT, Weppelmann TA, Katz LS, Tarr CL, Colwell RR, Morris JG Jr, Salemi M.

MBio. 2014 Dec 23;5(6). pii: e01824-14. doi: 10.1128/mBio.01824-14.

13.

Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen.

Gladney LM, Katz LS, Knipe KM, Rowe LA, Conley AB, Rishishwar L, Mariño-Ramírez L, Jordan IK, Tarr CL.

Genome Announc. 2014 Nov 20;2(6). pii: e01188-14. doi: 10.1128/genomeA.01188-14.

14.

Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.

Kahler AM, Haley BJ, Chen A, Mull BJ, Tarr CL, Turnsek M, Katz LS, Humphrys MS, Derado G, Freeman N, Boncy J, Colwell RR, Huq A, Hill VR.

Am J Trop Med Hyg. 2015 Jan;92(1):118-25. doi: 10.4269/ajtmh.13-0601. Epub 2014 Nov 10.

15.

Multidrug-resistant IncA/C plasmid in Vibrio cholerae from Haiti.

Folster JP, Katz L, McCullough A, Parsons MB, Knipe K, Sammons SA, Boncy J, Tarr CL, Whichard JM.

Emerg Infect Dis. 2014 Nov;20(11):1951-3. doi: 10.3201/eid2011.140889. No abstract available.

16.

Molecular and phenotypic characterization of Vibrio navarrensis isolates associated with human illness.

Gladney LM, Tarr CL.

J Clin Microbiol. 2014 Nov;52(11):4070-4. doi: 10.1128/JCM.01544-14. Epub 2014 Sep 3.

17.

Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype.

Katz LS, Turnsek M, Kahler A, Hill VR, Boyd EF, Tarr CL.

Genome Announc. 2014 Jul 10;2(4). pii: e00617-14. doi: 10.1128/genomeA.00617-14.

18.

Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens.

Kirchberger PC, Turnsek M, Hunt DE, Haley BJ, Colwell RR, Polz MF, Tarr CL, Boucher Y.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3208-14. doi: 10.1099/ijs.0.060145-0. Epub 2014 Jun 27.

PMID:
24972615
19.

Listeria monocytogenes Infection in a Sugar Glider (Petaurus breviceps) - New Mexico, 2011.

Nichols M, Takacs N, Ragsdale J, Levenson D, Marquez C, Roache K, Tarr CL.

Zoonoses Public Health. 2015 Jun;62(4):254-7. doi: 10.1111/zph.12134. Epub 2014 May 10.

PMID:
24815369
20.

Population structure of Listeria monocytogenes serotype 4b isolates from sporadic human listeriosis cases in the United States from 2003 to 2008.

Lee S, Ward TJ, Graves LM, Tarr CL, Siletzky RM, Kathariou S.

Appl Environ Microbiol. 2014 Jun;80(12):3632-44.

21.

Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493.

Kalburge SS, Polson SW, Boyd Crotty K, Katz L, Turnsek M, Tarr CL, Martinez-Urtaza J, Boyd EF.

Genome Announc. 2014 Mar 13;2(2). pii: e00159-14. doi: 10.1128/genomeA.00159-14.

22.

Multistate outbreak of listeriosis associated with cantaloupe.

McCollum JT, Cronquist AB, Silk BJ, Jackson KA, O'Connor KA, Cosgrove S, Gossack JP, Parachini SS, Jain NS, Ettestad P, Ibraheem M, Cantu V, Joshi M, DuVernoy T, Fogg NW Jr, Gorny JR, Mogen KM, Spires C, Teitell P, Joseph LA, Tarr CL, Imanishi M, Neil KP, Tauxe RV, Mahon BE.

N Engl J Med. 2013 Sep 5;369(10):944-53. doi: 10.1056/NEJMoa1215837.

23.

Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti.

Katz LS, Petkau A, Beaulaurier J, Tyler S, Antonova ES, Turnsek MA, Guo Y, Wang S, Paxinos EE, Orata F, Gladney LM, Stroika S, Folster JP, Rowe L, Freeman MM, Knox N, Frace M, Boncy J, Graham M, Hammer BK, Boucher Y, Bashir A, Hanage WP, Van Domselaar G, Tarr CL.

MBio. 2013 Jul 2;4(4). pii: e00398-13. doi: 10.1128/mBio.00398-13.

24.

A hybrid approach for the automated finishing of bacterial genomes.

Bashir A, Klammer A, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE.

Nat Biotechnol. 2012 Jul 1;30(7):701-707. doi: 10.1038/nbt.2288.

25.

Toxigenic Vibrio cholerae O1 in water and seafood, Haiti.

Hill VR, Cohen N, Kahler AM, Jones JL, Bopp CA, Marano N, Tarr CL, Garrett NM, Boncy J, Henry A, Gómez GA, Wellman M, Curtis M, Freeman MM, Turnsek M, Benner RA Jr, Dahourou G, Espey D, DePaola A, Tappero JW, Handzel T, Tauxe RV.

Emerg Infect Dis. 2011 Nov;17(11):2147-50. doi: 10.3201/eid1711.110748.

26.

Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations.

Boucher Y, Cordero OX, Takemura A, Hunt DE, Schliep K, Bapteste E, Lopez P, Tarr CL, Polz MF.

MBio. 2011 Apr 12;2(2). pii: e00335-10. doi: 10.1128/mBio.00335-10. Print 2011.

27.

Molecular characterization reveals similar virulence gene content in unrelated clonal groups of Escherichia coli of serogroup O174 (OX3).

Tarr CL, Nelson AM, Beutin L, Olsen KE, Whittam TS.

J Bacteriol. 2008 Feb;190(4):1344-9. Epub 2007 Dec 14.

28.

Recent gene conversions between duplicated glutamate decarboxylase genes (gadA and gadB) in pathogenic Escherichia coli.

Bergholz TM, Tarr CL, Christensen LM, Betting DJ, Whittam TS.

Mol Biol Evol. 2007 Oct;24(10):2323-33. Epub 2007 Aug 4.

PMID:
17675652
29.

Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination.

Tarr CL, Patel JS, Puhr ND, Sowers EG, Bopp CA, Strockbine NA.

J Clin Microbiol. 2007 Jan;45(1):134-40. Epub 2006 Nov 8.

31.

Natural selection of the major histocompatibility complex (Mhc) in Hawaiian honeycreepers (Drepanidinae).

Jarvi SI, Tarr CL, McIntosh CE, Atkinson CT, Fleischer RC.

Mol Ecol. 2004 Aug;13(8):2157-68.

PMID:
15245391
32.

Molecular characterization of a serotype O121:H19 clone, a distinct Shiga toxin-producing clone of pathogenic Escherichia coli.

Tarr CL, Large TM, Moeller CL, Lacher DW, Tarr PI, Acheson DW, Whittam TS.

Infect Immun. 2002 Dec;70(12):6853-9.

33.
34.

Cryptic genetic variation and paraphyly in ravens.

Omland KE, Tarr CL, Boarma WI, Marzluff JM, Fleischer RC.

Proc Biol Sci. 2000 Dec 22;267(1461):2475-82.

35.
37.

Primers for polymorphic GT microsatellites isolated from the Mariana crow, Corvus kubaryi.

Tarr CL, Fleischer RC.

Mol Ecol. 1998 Feb;7(2):253-5. No abstract available.

PMID:
9532766
38.

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