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Items: 47

1.

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.

Fu S, Chang PL, Friesen ML, Teakle NL, Tarone AM, Sze SH.

BMC Genomics. 2019 Jun 6;20(Suppl 5):425. doi: 10.1186/s12864-019-5702-5.

2.

Machine learning performance in a microbial molecular autopsy context: A cross-sectional postmortem human population study.

Zhang Y, Pechal JL, Schmidt CJ, Jordan HR, Wang WW, Benbow ME, Sze SH, Tarone AM.

PLoS One. 2019 Apr 15;14(4):e0213829. doi: 10.1371/journal.pone.0213829. eCollection 2019.

3.

Suppressing tawny crazy ant (Nylanderia fulva) by RNAi technology.

Meng J, Lei J, Davitt A, Holt JR, Huang J, Gold R, Vargo EL, Tarone AM, Zhu-Salzman K.

Insect Sci. 2018 May 22. doi: 10.1111/1744-7917.12604. [Epub ahead of print]

PMID:
29790281
4.

Temporal and Spatial Impact of Human Cadaver Decomposition on Soil Bacterial and Arthropod Community Structure and Function.

Singh B, Minick KJ, Strickland MS, Wickings KG, Crippen TL, Tarone AM, Benbow ME, Sufrin N, Tomberlin JK, Pechal JL.

Front Microbiol. 2018 Jan 4;8:2616. doi: 10.3389/fmicb.2017.02616. eCollection 2017.

5.

A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms.

Sze SH, Parrott JJ, Tarone AM.

BMC Genomics. 2017 Dec 6;18(Suppl 10):895. doi: 10.1186/s12864-017-4270-9.

6.

Is PMI the Hypothesis or the Null Hypothesis?

Tarone AM, Sanford MR.

J Med Entomol. 2017 Sep 1;54(5):1109-1115. doi: 10.1093/jme/tjx119.

PMID:
28874020
7.

A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms.

Sze SH, Pimsler ML, Tomberlin JK, Jones CD, Tarone AM.

BMC Genomics. 2017 May 24;18(Suppl 4):387. doi: 10.1186/s12864-017-3735-1.

8.

Genome Sequence of a Providencia stuartii Strain Isolated from Luciliasericata Salivary Glands.

Yuan Y, Zhang Y, Fu S, Crippen TL, Visi DK, Benbow ME, Allen MS, Tomberlin JK, Sze SH, Tarone AM.

Genome Announc. 2017 Apr 27;5(17). pii: e00250-17. doi: 10.1128/genomeA.00250-17.

9.

Genome Sequence of a Proteus mirabilis Strain Isolated from the Salivary Glands of Larval Lucilia sericata.

Yuan Y, Zhang Y, Fu S, Crippen TL, Visi DK, Benbow ME, Allen MS, Tomberlin JK, Sze SH, Tarone AM.

Genome Announc. 2016 Jul 28;4(4). pii: e00672-16. doi: 10.1128/genomeA.00672-16.

10.

Human Thanatomicrobiome Succession and Time Since Death.

Javan GT, Finley SJ, Can I, Wilkinson JE, Hanson JD, Tarone AM.

Sci Rep. 2016 Jul 14;6:29598. doi: 10.1038/srep29598.

11.

Forensic Entomology: Evaluating Uncertainty Associated With Postmortem Interval (PMI) Estimates With Ecological Models.

Faris AM, Wang HH, Tarone AM, Grant WE.

J Med Entomol. 2016 May 31. pii: tjw070. [Epub ahead of print]

PMID:
27247349
12.

Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data.

Fu S, Tarone AM, Sze SH.

BMC Genomics. 2015;16 Suppl 11:S5. doi: 10.1186/1471-2164-16-S11-S5. Epub 2015 Nov 10.

13.

Field Documentation of Unusual Post-Mortem Arthropod Activity on Human Remains.

Pechal JL, Benbow ME, Tomberlin JK, Crippen TL, Tarone AM, Singh B, Lenhart PA.

J Med Entomol. 2015 Jan;52(1):105-8. doi: 10.1093/jme/tju012.

PMID:
26336287
14.

Structural and Genetic Investigation of the Egg and First-Instar Larva of an Egg-Laying Population of Blaesoxipha plinthopyga (Diptera: Sarcophagidae), a Species of Forensic Importance.

Pimsler ML, Pape T, Johnston JS, Wharton RA, Parrott JJ, Restuccia D, Sanford MR, Tomberlin JK, Tarone AM.

J Med Entomol. 2014 Nov 1;51(6):1283-95. doi: 10.1603/ME14029. Epub 2014 Nov 1.

PMID:
26309319
15.

A metagenomic assessment of the bacteria associated with Lucilia sericata and Lucilia cuprina (Diptera: Calliphoridae).

Singh B, Crippen TL, Zheng L, Fields AT, Yu Z, Ma Q, Wood TK, Dowd SE, Flores M, Tomberlin JK, Tarone AM.

Appl Microbiol Biotechnol. 2015 Jan;99(2):869-83. doi: 10.1007/s00253-014-6115-7. Epub 2014 Oct 14.

PMID:
25306907
16.

Functional characterization of calliphorid cell death genes and cellularization gene promoters for controlling gene expression and cell viability in early embryos.

Edman RM, Linger RJ, Belikoff EJ, Li F, Sze SH, Tarone AM, Scott MJ.

Insect Mol Biol. 2015 Feb;24(1):58-70. doi: 10.1111/imb.12135. Epub 2014 Sep 16.

PMID:
25225046
17.

A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.

Sze SH, Tarone AM.

BMC Genomics. 2014;15 Suppl 5:S6. doi: 10.1186/1471-2164-15-S5-S6. Epub 2014 Jul 14.

18.

Intrapopulation genome size variation in D. melanogaster reflects life history variation and plasticity.

Ellis LL, Huang W, Quinn AM, Ahuja A, Alfrejd B, Gomez FE, Hjelmen CE, Moore KL, Mackay TF, Johnston JS, Tarone AM.

PLoS Genet. 2014 Jul 24;10(7):e1004522. doi: 10.1371/journal.pgen.1004522. eCollection 2014 Jul.

19.

Reply: A correspondence from a maturing discipline.

Tarone AM, Tomberlin JK, Johnston JS, Wallace JR, Benbow ME, Mohr R, Mondor EB, Vanlaerhoven SL.

J Med Entomol. 2014 May;51(3):490-2. No abstract available.

PMID:
24897841
20.

Developmental variation among Cochliomyia macellaria Fabricius (Diptera: Calliphoridae) populations from three ecoregions of Texas, USA.

Owings CG, Spiegelman C, Tarone AM, Tomberlin JK.

Int J Legal Med. 2014 Jul;128(4):709-17. doi: 10.1007/s00414-014-1014-0. Epub 2014 May 9.

PMID:
24811885
21.

Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines.

Huang W, Massouras A, Inoue Y, Peiffer J, Ràmia M, Tarone AM, Turlapati L, Zichner T, Zhu D, Lyman RF, Magwire MM, Blankenburg K, Carbone MA, Chang K, Ellis LL, Fernandez S, Han Y, Highnam G, Hjelmen CE, Jack JR, Javaid M, Jayaseelan J, Kalra D, Lee S, Lewis L, Munidasa M, Ongeri F, Patel S, Perales L, Perez A, Pu L, Rollmann SM, Ruth R, Saada N, Warner C, Williams A, Wu YQ, Yamamoto A, Zhang Y, Zhu Y, Anholt RR, Korbel JO, Mittelman D, Muzny DM, Gibbs RA, Barbadilla A, Johnston JS, Stone EA, Richards S, Deplancke B, Mackay TF.

Genome Res. 2014 Jul;24(7):1193-208. doi: 10.1101/gr.171546.113. Epub 2014 Apr 8.

22.

The role of spatial aggregation in forensic entomology.

Fiene JG, Sword GA, Van Laerhoven SL, Tarone AM.

J Med Entomol. 2014 Jan;51(1):1-9.

PMID:
24605447
23.

Sex determination mechanisms in the Calliphoridae (blow flies).

Scott MJ, Pimsler ML, Tarone AM.

Sex Dev. 2014;8(1-3):29-37. doi: 10.1159/000357132. Epub 2013 Dec 21. Review.

PMID:
24401179
24.

Microbial community functional change during vertebrate carrion decomposition.

Pechal JL, Crippen TL, Tarone AM, Lewis AJ, Tomberlin JK, Benbow ME.

PLoS One. 2013 Nov 12;8(11):e79035. doi: 10.1371/journal.pone.0079035. eCollection 2013.

25.

Bacteria mediate oviposition by the black soldier fly, Hermetia illucens (L.), (Diptera: Stratiomyidae).

Zheng L, Crippen TL, Holmes L, Singh B, Pimsler ML, Benbow ME, Tarone AM, Dowd S, Yu Z, Vanlaerhoven SL, Wood TK, Tomberlin JK.

Sci Rep. 2013;3:2563. doi: 10.1038/srep02563.

26.

A survey of bacterial diversity from successive life stages of black soldier fly (Diptera: Stratiomyidae) by using 16S rDNA pyrosequencing.

Zheng L, Crippen TL, Singh B, Tarone AM, Dowd S, Yu Z, Wood TK, Tomberlin JK.

J Med Entomol. 2013 May;50(3):647-58.

PMID:
23802462
27.

The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing.

Pechal JL, Crippen TL, Benbow ME, Tarone AM, Dowd S, Tomberlin JK.

Int J Legal Med. 2014 Jan;128(1):193-205. doi: 10.1007/s00414-013-0872-1. Epub 2013 Jun 10.

PMID:
23749255
28.

Increasing precision in development-based postmortem interval estimates: what's sex got to do with it?

Picard CJ, Deblois K, Tovar F, Bradley JL, Johnston JS, Tarone AM.

J Med Entomol. 2013 Mar;50(2):425-31.

PMID:
23540132
29.

Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity.

Tarone AM, McIntyre LM, Harshman LG, Nuzhdin SV.

Heredity (Edinb). 2012 Oct;109(4):226-34. doi: 10.1038/hdy.2012.34. Epub 2012 Jul 4.

30.

Genome sizes of forensically relevant Diptera.

Picard CJ, Johnston JS, Tarone AM.

J Med Entomol. 2012 Jan;49(1):192-7.

PMID:
22308788
31.

A de novo transcriptome assembly of Lucilia sericata (Diptera: Calliphoridae) with predicted alternative splices, single nucleotide polymorphisms and transcript expression estimates.

Sze SH, Dunham JP, Carey B, Chang PL, Li F, Edman RM, Fjeldsted C, Scott MJ, Nuzhdin SV, Tarone AM.

Insect Mol Biol. 2012 Apr;21(2):205-21. doi: 10.1111/j.1365-2583.2011.01127.x. Epub 2012 Jan 29.

PMID:
22283785
32.

Proteus mirabilis interkingdom swarming signals attract blow flies.

Ma Q, Fonseca A, Liu W, Fields AT, Pimsler ML, Spindola AF, Tarone AM, Crippen TL, Tomberlin JK, Wood TK.

ISME J. 2012 Jul;6(7):1356-66. doi: 10.1038/ismej.2011.210. Epub 2012 Jan 12.

33.

Population and temperature effects on Lucilia sericata (Diptera: Calliphoridae) body size and minimum development time.

Tarone AM, Picard CJ, Spiegelman C, Foran DR.

J Med Entomol. 2011 Sep;48(5):1062-8.

PMID:
21936326
34.

Antitoxin MqsA helps mediate the bacterial general stress response.

Wang X, Kim Y, Hong SH, Ma Q, Brown BL, Pu M, Tarone AM, Benedik MJ, Peti W, Page R, Wood TK.

Nat Chem Biol. 2011 Jun;7(6):359-66. doi: 10.1038/nchembio.560. Epub 2011 Apr 24.

35.

Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster.

Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM.

PLoS Genet. 2011 Mar;7(3):e1001336. doi: 10.1371/journal.pgen.1001336. Epub 2011 Mar 17.

36.

Basic research in evolution and ecology enhances forensics.

Tomberlin JK, Benbow ME, Tarone AM, Mohr RM.

Trends Ecol Evol. 2011 Feb;26(2):53-5. doi: 10.1016/j.tree.2010.12.001. Epub 2010 Dec 22.

PMID:
21185105
37.

Gene expression during blow fly development: improving the precision of age estimates in forensic entomology.

Tarone AM, Foran DR.

J Forensic Sci. 2011 Jan;56 Suppl 1:S112-22. doi: 10.1111/j.1556-4029.2010.01632.x. Epub 2010 Dec 13.

PMID:
21155802
38.

A roadmap for bridging basic and applied research in forensic entomology.

Tomberlin JK, Mohr R, Benbow ME, Tarone AM, VanLaerhoven S.

Annu Rev Entomol. 2011;56:401-21. doi: 10.1146/annurev-ento-051710-103143. Review.

PMID:
20822449
39.

Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping.

Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JD.

Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10302-7. doi: 10.1073/pnas.0913160107. Epub 2010 May 17.

40.

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M.

Nature. 2010 Jun 3;465(7298):627-31. doi: 10.1038/nature08800. Epub 2010 Mar 24.

41.

Generalized additive models and Lucilia sericata growth: assessing confidence intervals and error rates in forensic entomology.

Tarone AM, Foran DR.

J Forensic Sci. 2008 Jul;53(4):942-8. doi: 10.1111/j.1556-4029.2008.00744.x.

PMID:
18503527
42.

Mapping genetically compensatory pathways from synthetic lethal interactions in yeast.

Ma X, Tarone AM, Li W.

PLoS One. 2008 Apr 9;3(4):e1922. doi: 10.1371/journal.pone.0001922.

43.

Aging blow fly eggs using gene expression: a feasibility study.

Tarone AM, Jennings KC, Foran DR.

J Forensic Sci. 2007 Nov;52(6):1350-4.

PMID:
18093065
44.
45.

Genetic variation for expression of the sex determination pathway genes in Drosophila melanogaster.

Tarone AM, Nasser YM, Nuzhdin SV.

Genet Res. 2005 Aug;86(1):31-40.

PMID:
16181521
46.

Functional divergence caused by ancient positive selection of a Drosophila hybrid incompatibility locus.

Barbash DA, Awadalla P, Tarone AM.

PLoS Biol. 2004 Jun;2(6):e142. Epub 2004 Jun 15.

47.

A rapidly evolving MYB-related protein causes species isolation in Drosophila.

Barbash DA, Siino DF, Tarone AM, Roote J.

Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5302-7. Epub 2003 Apr 14.

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