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Items: 1 to 50 of 206

1.

LDeform: Longitudinal deformation analysis for adaptive radiotherapy of lung cancer.

Nadeem S, Zhang P, Rimner A, Sonke JJ, Deasy JO, Tannenbaum A.

Med Phys. 2020 Jan;47(1):132-141. doi: 10.1002/mp.13907. Epub 2019 Nov 26.

PMID:
31693764
2.

Network curvature as a hallmark of brain structural connectivity.

Farooq H, Chen Y, Georgiou TT, Tannenbaum A, Lenglet C.

Nat Commun. 2019 Oct 30;10(1):4937. doi: 10.1038/s41467-019-12915-x.

3.

Molecular phenotyping using networks, diffusion, and topology: soft tissue sarcoma.

Mathews JC, Pouryahya M, Moosmüller C, Kevrekidis YG, Deasy JO, Tannenbaum A.

Sci Rep. 2019 Sep 27;9(1):13982. doi: 10.1038/s41598-019-50300-2.

4.

Robust and interpretable PAM50 reclassification exhibits survival advantage for myoepithelial and immune phenotypes.

Mathews JC, Nadeem S, Levine AJ, Pouryahya M, Deasy JO, Tannenbaum A.

NPJ Breast Cancer. 2019 Sep 9;5:30. doi: 10.1038/s41523-019-0124-8. eCollection 2019.

5.

Optimal mass transport kinetic modeling for head and neck DCE-MRI: Initial analysis.

Elkin R, Nadeem S, LoCastro E, Paudyal R, Hatzoglou V, Lee NY, Shukla-Dave A, Deasy JO, Tannenbaum A.

Magn Reson Med. 2019 Dec;82(6):2314-2325. doi: 10.1002/mrm.27897. Epub 2019 Jul 4.

PMID:
31273818
6.

GlymphVIS: Visualizing Glymphatic Transport Pathways Using Regularized Optimal Transport.

Elkin R, Nadeem S, Haber E, Steklova K, Lee H, Benveniste H, Tannenbaum A.

Med Image Comput Comput Assist Interv. 2018 Sep;11070:844-852. doi: 10.1007/978-3-030-00928-1_95. Epub 2018 Sep 26.

7.

Knowing Is (Only) Half the Battle.

Tannenbaum AM, Halpern SD.

Ann Intern Med. 2019 Mar 5;170(5):338-339. doi: 10.7326/M18-3691. Epub 2019 Jan 29. No abstract available.

PMID:
30690647
8.

High-Throughput Microfluidic Sorting of Live Magnetotactic Bacteria.

Tay A, Pfeiffer D, Rowe K, Tannenbaum A, Popp F, Strangeway R, Schüler D, Di Carlo D.

Appl Environ Microbiol. 2018 Aug 17;84(17). pii: e01308-18. doi: 10.1128/AEM.01308-18. Print 2018 Sep 1.

9.

Characterizing Cancer Drug Response and Biological Correlates: A Geometric Network Approach.

Pouryahya M, Oh JH, Mathews JC, Deasy JO, Tannenbaum AR.

Sci Rep. 2018 Apr 23;8(1):6402. doi: 10.1038/s41598-018-24679-3.

10.

Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes.

Vermillion KL, Bacher R, Tannenbaum AP, Swanson S, Jiang P, Chu LF, Stewart R, Thomson JA, Vereide DT.

Dev Biol. 2018 Jul 1;439(1):30-41. doi: 10.1016/j.ydbio.2018.04.007. Epub 2018 Apr 17.

11.

Expandable Arterial Endothelial Precursors from Human CD34+ Cells Differ in Their Proclivity to Undergo an Endothelial-to-Mesenchymal Transition.

Miller AZ, Satchie A, Tannenbaum AP, Nihal A, Thomson JA, Vereide DT.

Stem Cell Reports. 2018 Jan 9;10(1):73-86. doi: 10.1016/j.stemcr.2017.12.011.

12.

Optimal transport for Gaussian mixture models.

Chen Y, Georgiou TT, Tannenbaum A.

IEEE Access. 2018;7:6269-6278. doi: 10.1109/ACCESS.2018.2889838. Epub 2018 Dec 27.

13.

Matricial Wasserstein-1 Distance.

Chen Y, Georgiou TT, Ning L, Tannenbaum A.

IEEE Control Syst Lett. 2017 Jul;1(1):14-19. doi: 10.1109/LCSYS.2017.2699319. Epub 2017 Apr 28.

14.

Impaired Fasting Glucose Is the Major Determinant of the 20-Year Mortality Risk Associated With Metabolic Syndrome in Nondiabetic Patients With Stable Coronary Artery Disease.

Younis A, Goldkorn R, Goldenberg I, Geva D, Tzur B, Mazu A, Younis A, Fisman Z, Tannenbaum A, Klempfner R.

J Am Heart Assoc. 2017 Oct 27;6(11). pii: e006609. doi: 10.1161/JAHA.117.006609.

15.

Film-Based Teaching Cases: Ditch or Digitize?

Paul DK, Castro-Aragon I, Tannenbaum A, LeBedis C, Gupta A, Shaffer K, Kadom N.

J Am Coll Radiol. 2018 Feb;15(2):343-345. doi: 10.1016/j.jacr.2017.08.031. Epub 2017 Oct 24. No abstract available.

PMID:
29079251
16.

Robust transport over networks.

Chen Y, Georgiou T, Pavon M, Tannenbaum A.

IEEE Trans Automat Contr. 2017 Sep;62(9):4675-4682. doi: 10.1109/TAC.2016.2626796. Epub 2016 Nov 9.

17.

Pediatric Sarcoma Data Forms a Unique Cluster Measured via the Earth Mover's Distance.

Chen Y, Cruz FD, Sandhu R, Kung AL, Mundi P, Deasy JO, Tannenbaum A.

Sci Rep. 2017 Aug 1;7(1):7035. doi: 10.1038/s41598-017-07551-8.

18.

Cerebrospinal and interstitial fluid transport via the glymphatic pathway modeled by optimal mass transport.

Ratner V, Gao Y, Lee H, Elkin R, Nedergaard M, Benveniste H, Tannenbaum A.

Neuroimage. 2017 May 15;152:530-537. doi: 10.1016/j.neuroimage.2017.03.021. Epub 2017 Mar 18.

19.

Transcriptional Responses to Ultraviolet and Ionizing Radiation: An Approach Based on Graph Curvature.

Chen Y, Oh JH, Sandhu R, Lee S, Deasy JO, Tannenbaum A.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2016 Dec;2016:1302-1306. doi: 10.1109/BIBM.2016.7822706. Epub 2017 Jan 19.

20.

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.

Zhou N, Yu X, Zhao T, Wen S, Wang F, Zhu W, Kurc T, Tannenbaum A, Saltz J, Gao Y.

Proc SPIE Int Soc Opt Eng. 2017 Feb;10140. pii: 101400K. doi: 10.1117/12.2254220. Epub 2017 Mar 1.

21.

Multi-scale learning based segmentation of glands in digital colonrectal pathology images.

Gao Y, Liu W, Arjun S, Zhu L, Ratner V, Kurc T, Saltz J, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2016 Feb;9791. pii: 97910M. Epub 2016 Mar 23.

22.

Ricci curvature: An economic indicator for market fragility and systemic risk.

Sandhu RS, Georgiou TT, Tannenbaum AR.

Sci Adv. 2016 May 27;2(5):e1501495. doi: 10.1126/sciadv.1501495. eCollection 2016 May.

23.

Hierarchical nucleus segmentation in digital pathology images.

Gao Y, Ratner V, Zhu L, Diprima T, Kurc T, Tannenbaum A, Saltz J.

Proc SPIE Int Soc Opt Eng. 2016 Feb;9791. pii: 979117. Epub 2016 Mar 23.

24.

On Matrix-Valued Monge-Kantorovich Optimal Mass Transport.

Ning L, Georgiou TT, Tannenbaum A.

IEEE Trans Automat Contr. 2015 Feb;60(2):373-382. Epub 2014 Aug 21.

25.

Interactive Image Segmentation Framework Based On Control Theory.

Zhu L, Kolesov I, Karasev P, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2015 Feb 21;9413. pii: 941343. Epub 2015 Mar 20.

26.

Optimal-mass-transfer-based estimation of glymphatic transport in living brain.

Ratner V, Zhu L, Kolesov I, Nedergaard M, Benveniste H, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2015 Feb 21;9413. pii: 94131J. Epub 2015 Mar 20.

27.

A Kalman Filtering Perspective for Multiatlas Segmentation.

Gao Y, Zhu L, Cates J, MacLeod RS, Bouix S, Tannenbaum A.

SIAM J Imaging Sci. 2015;8(2):1007-1029. Epub 2015 Apr 30.

28.

A Stochastic Approach to Diffeomorphic Point Set Registration with Landmark Constraints.

Kolesov I, Lee J, Sharp G, Vela P, Tannenbaum A.

IEEE Trans Pattern Anal Mach Intell. 2016 Feb;38(2):238-51. doi: 10.1109/TPAMI.2015.2448102.

29.

Graph Curvature for Differentiating Cancer Networks.

Sandhu R, Georgiou T, Reznik E, Zhu L, Kolesov I, Senbabaoglu Y, Tannenbaum A.

Sci Rep. 2015 Jul 14;5:12323. doi: 10.1038/srep12323.

30.

Linear Models Based on Noisy Data and the Frisch Scheme.

Ning L, Georgiou TT, Tannenbaum A, Boyd SP.

SIAM Rev Soc Ind Appl Math. 2015;57(2):167-197. Epub 2015 May 8.

31.

Clinical associations of incidentally detected parotid gland calcification on CT.

Buch K, Nadgir RN, Fujita A, Tannenbaum AD, Ozonoff A, Sakai O.

Laryngoscope. 2015 Jun;125(6):1360-5. doi: 10.1002/lary.25095. Epub 2014 Dec 15.

PMID:
25510822
32.

Reconstruction and Feature Selection for Desorption Electrospray Ionization Mass Spectroscopy Imagery.

Gao Y, Zhu L, Norton I, Agar NY, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2014 Mar 12;9036:90360D.

33.

Interpolation of Longitudinal Shape and Image Data via Optimal Mass Transport.

Gao Y, Zhu LJ, Bouix S, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2014 Mar 21;9034:90342X.

34.

A Framework for Joint Image-and-Shape Analysis.

Gao Y, Tannenbaum A, Bouix S.

Proc SPIE Int Soc Opt Eng. 2014 Mar 21;9034:90340V.

35.

MRI Brain Tumor Segmentation and Necrosis Detection Using Adaptive Sobolev Snakes.

Nakhmani A, Kikinis R, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2014 Mar 21;9034:903442.

36.

A complete system for automatic extraction of left ventricular myocardium from CT images using shape segmentation and contour evolution.

Liangjia Zhu, Yi Gao, Appia V, Yezzi A, Arepalli C, Faber T, Stillman A, Tannenbaum A.

IEEE Trans Image Process. 2014 Mar;23(3):1340-51. doi: 10.1109/TIP.2014.2300751.

37.

Evaluation of current algorithms for segmentation of scar tissue from late gadolinium enhancement cardiovascular magnetic resonance of the left atrium: an open-access grand challenge.

Karim R, Housden RJ, Balasubramaniam M, Chen Z, Perry D, Uddin A, Al-Beyatti Y, Palkhi E, Acheampong P, Obom S, Hennemuth A, Lu Y, Bai W, Shi W, Gao Y, Peitgen HO, Radau P, Razavi R, Tannenbaum A, Rueckert D, Cates J, Schaeffter T, Peters D, MacLeod R, Rhode K.

J Cardiovasc Magn Reson. 2013 Dec 20;15:105. doi: 10.1186/1532-429X-15-105.

38.

Stochastic Image Registration with User Constraints.

Kolesov I, Lee J, Vela P, Tannenbaum A.

Proc SPIE Int Soc Opt Eng. 2013 Mar 13;8669. doi: 10.1117/12.2007096.

39.

Particle Filters and Occlusion Handling for Rigid 2D-3D Pose Tracking.

Lee J, Sandhu R, Tannenbaum A.

Comput Vis Image Underst. 2013 Aug 1;117(8):922-933.

40.

Automatic segmentation of the left atrium from MR images via variational region growing with a moments-based shape prior.

Zhu L, Gao Y, Yezzi A, Tannenbaum A.

IEEE Trans Image Process. 2013 Dec;22(12):5111-22. doi: 10.1109/TIP.2013.2282049. Epub 2013 Sep 16.

41.

Automated skin segmentation in ultrasonic evaluation of skin toxicity in breast cancer radiotherapy.

Gao Y, Tannenbaum A, Chen H, Torres M, Yoshida E, Yang X, Wang Y, Curran W, Liu T.

Ultrasound Med Biol. 2013 Nov;39(11):2166-75. doi: 10.1016/j.ultrasmedbio.2013.04.006. Epub 2013 Aug 27.

42.

Multimodal deformable registration of traumatic brain injury MR volumes via the Bhattacharyya distance.

Lou Y, Irimia A, Vela PA, Chambers MC, Van Horn JD, Vespa PM, Tannenbaum AR.

IEEE Trans Biomed Eng. 2013 Sep;60(9):2511-20. doi: 10.1109/TBME.2013.2259625.

43.

Clinical significance of trochlear calcifications in the orbit.

Buch K, Nadgir RN, Tannenbaum AD, Ozonoff A, Fujita A, Sakai O.

AJNR Am J Neuroradiol. 2014 Mar;35(3):573-7. doi: 10.3174/ajnr.A3697. Epub 2013 Aug 14.

44.

Interactive medical image segmentation using PDE control of active contours.

Karasev P, Kolesov I, Fritscher K, Vela P, Mitchell P, Tannenbaum A.

IEEE Trans Med Imaging. 2013 Nov;32(11):2127-39. doi: 10.1109/TMI.2013.2274734. Epub 2013 Jul 24.

45.

Sparse texture active contour.

Gao Y, Bouix S, Shenton M, Tannenbaum A.

IEEE Trans Image Process. 2013 Oct;22(10):3866-78. doi: 10.1109/TIP.2013.2263147. Epub 2013 Jun 21.

46.

Automatic delineation of the myocardial wall from CT images via shape segmentation and variational region growing.

Zhu L, Gao Y, Appia V, Yezzi A, Arepalli C, Faber T, Stillman A, Tannenbaum A.

IEEE Trans Biomed Eng. 2013 Oct;60(10):2887-95. doi: 10.1109/TBME.2013.2266118. Epub 2013 Jun 4.

47.

Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems.

Gholami B, Bailey JM, Haddad WM, Tannenbaum AR.

IEEE Trans Control Syst Technol. 2012 Mar;20(5):1343-1350.

48.

Optical flow estimation for flame detection in videos.

Mueller M, Karasev P, Kolesov I, Tannenbaum A.

IEEE Trans Image Process. 2013 Jul;22(7):2786-97. doi: 10.1109/TIP.2013.2258353. Epub 2013 Apr 16.

49.
50.

Joint CT/CBCT deformable registration and CBCT enhancement for cancer radiotherapy.

Lou Y, Niu T, Jia X, Vela PA, Zhu L, Tannenbaum AR.

Med Image Anal. 2013 Apr;17(3):387-400. doi: 10.1016/j.media.2013.01.005. Epub 2013 Feb 4.

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