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Items: 1 to 50 of 181

1.

A study on the genetic relationships of Avena taxa and the origins of hexaploid oat.

Chew P, Meade K, Hayes A, Harjes C, Bao Y, Beattie AD, Puddephat I, Gusmini G, Tanksley SD.

Theor Appl Genet. 2016 Jul;129(7):1405-1415. doi: 10.1007/s00122-016-2712-4. Epub 2016 Apr 5.

PMID:
27048238
2.

Selfing for the design of genomic selection experiments in biparental plant populations.

McClosky B, LaCombe J, Tanksley SD.

Theor Appl Genet. 2013 Nov;126(11):2907-20. doi: 10.1007/s00122-013-2182-x. Epub 2013 Aug 27.

PMID:
23982592
3.

The impact of recombination on short-term selection gain in plant breeding experiments.

McClosky B, Tanksley SD.

Theor Appl Genet. 2013 Sep;126(9):2299-312. doi: 10.1007/s00122-013-2136-3. Epub 2013 Jun 13.

PMID:
23760653
4.

Chromosomal evolution in the plant family Solanaceae.

Wu F, Tanksley SD.

BMC Genomics. 2010 Mar 17;11:182. doi: 10.1186/1471-2164-11-182.

5.

COSII genetic maps of two diploid Nicotiana species provide a detailed picture of synteny with tomato and insights into chromosome evolution in tetraploid N. tabacum.

Wu F, Eannetta NT, Xu Y, Plieske J, Ganal M, Pozzi C, Bakaher N, Tanksley SD.

Theor Appl Genet. 2010 Feb;120(4):809-27. doi: 10.1007/s00122-009-1206-z. Epub 2009 Nov 17.

PMID:
19921141
6.

A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum.

Wu F, Eannetta NT, Xu Y, Durrett R, Mazourek M, Jahn MM, Tanksley SD.

Theor Appl Genet. 2009 May;118(7):1279-93. doi: 10.1007/s00122-009-0980-y. Epub 2009 Feb 20.

PMID:
19229514
7.

Natural variation in an ABC transporter gene associated with seed size evolution in tomato species.

Orsi CH, Tanksley SD.

PLoS Genet. 2009 Jan;5(1):e1000347. doi: 10.1371/journal.pgen.1000347. Epub 2009 Jan 23.

8.

EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.).

Labate JA, Robertson LD, Wu F, Tanksley SD, Baldo AM.

Theor Appl Genet. 2009 Mar;118(5):1005-14. doi: 10.1007/s00122-008-0957-2. Epub 2009 Jan 20.

PMID:
19153710
9.

A detailed synteny map of the eggplant genome based on conserved ortholog set II (COSII) markers.

Wu F, Eannetta NT, Xu Y, Tanksley SD.

Theor Appl Genet. 2009 Mar;118(5):927-35. doi: 10.1007/s00122-008-0950-9. Epub 2009 Jan 9.

PMID:
19132336
10.

Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.

Wang Y, Diehl A, Wu F, Vrebalov J, Giovannoni J, Siepel A, Tanksley SD.

Genetics. 2008 Sep;180(1):391-408. doi: 10.1534/genetics.108.087981. Epub 2008 Aug 24.

11.

The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C, Ling H, Xue Y, Seymour G, Bishop G, Bryan G, Sharma R, Khurana J, Tyagi A, Chattopadhyay D, Singh NK, Stiekema W, Lindhout P, Jesse T, Lankhorst RK, Bouzayen M, Shibata D, Tabata S, Granell A, Botella MA, Giuliano G, Frusciante L, Causse M, Zamir D.

Comp Funct Genomics. 2005;6(3):153-8. doi: 10.1002/cfg.468.

12.

Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication.

Cong B, Barrero LS, Tanksley SD.

Nat Genet. 2008 Jun;40(6):800-4. doi: 10.1038/ng.144. Epub 2008 May 11.

PMID:
18469814
13.

The SGN comparative map viewer.

Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD.

Bioinformatics. 2008 Feb 1;24(3):422-3. doi: 10.1093/bioinformatics/btm597. Epub 2008 Jan 17.

PMID:
18202028
14.

Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.

Chen KY, Cong B, Wing R, Vrebalov J, Tanksley SD.

Science. 2007 Oct 26;318(5850):643-5.

15.

Cloning, expression, crystallization and preliminary X-ray analysis of the XMT and DXMT N-methyltransferases from Coffea canephora (robusta).

McCarthy AA, Biget L, Lin C, Petiard V, Tanksley SD, McCarthy JG.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Apr 1;63(Pt 4):304-7. Epub 2007 Mar 12.

18.
19.

EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot.

Carlson JE, Leebens-Mack JH, Wall PK, Zahn LM, Mueller LA, Landherr LL, Hu Y, Ilut DC, Arrington JM, Choirean S, Becker A, Field D, Tanksley SD, Ma H, dePamphilis CW.

Plant Mol Biol. 2006 Oct;62(3):351-69. Epub 2006 Aug 17.

PMID:
16915518
20.

CpG + CpNpG analysis of protein-coding sequences from tomato.

Hobolth A, Nielsen R, Wang Y, Wu F, Tanksley SD.

Mol Biol Evol. 2006 Jun;23(6):1318-23. Epub 2006 Apr 6.

PMID:
16600999
21.

Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome.

Wang Y, Tang X, Cheng Z, Mueller L, Giovannoni J, Tanksley SD.

Genetics. 2006 Apr;172(4):2529-40. Epub 2006 Feb 19.

22.

Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.

Lin C, Mueller LA, Mc Carthy J, Crouzillat D, Pétiard V, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):114-30. Epub 2005 Nov 5.

23.

Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development.

Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ.

Plant Cell. 2005 Nov;17(11):2954-65. Epub 2005 Oct 21.

24.

Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.

Wang Y, van der Hoeven RS, Nielsen R, Mueller LA, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):72-84. Epub 2005 Oct 6.

PMID:
16208505
25.

The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.

Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.

Plant Physiol. 2005 Jul;138(3):1310-7.

26.

Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana.

Yogeeswaran K, Frary A, York TL, Amenta A, Lesser AH, Nasrallah JB, Tanksley SD, Nasrallah ME.

Genome Res. 2005 Apr;15(4):505-15.

27.

Floral gene resources from basal angiosperms for comparative genomics research.

Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH.

BMC Plant Biol. 2005 Mar 30;5:5.

30.

Comprehensive EST analysis of tomato and comparative genomics of fruit ripening.

Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ.

Plant J. 2004 Oct;40(1):47-59.

31.

ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development.

Alba R, Fei Z, Payton P, Liu Y, Moore SL, Debbie P, Cohn J, D'Ascenzo M, Gordon JS, Rose JK, Martin G, Tanksley SD, Bouzayen M, Jahn MM, Giovannoni J.

Plant J. 2004 Sep;39(5):697-714.

32.

Evaluating the genetic basis of multiple-locule fruit in a broad cross section of tomato cultivars.

Barrero LS, Tanksley SD.

Theor Appl Genet. 2004 Aug;109(3):669-79. Epub 2004 May 15.

PMID:
15292992
33.

A comparative study of the genetic bases of natural variation in tomato leaf, sepal, and petal morphology.

Frary A, Fritz LA, Tanksley SD.

Theor Appl Genet. 2004 Aug;109(3):523-33. Epub 2004 May 19.

PMID:
15150691
34.

The genetic, developmental, and molecular bases of fruit size and shape variation in tomato.

Tanksley SD.

Plant Cell. 2004;16 Suppl:S181-9. Epub 2004 May 6. Review. No abstract available.

35.

Advanced backcross QTL analysis of a Lycopersicon esculentum x L. pennellii cross and identification of possible orthologs in the Solanaceae.

Frary A, Fulton TM, Zamir D, Tanksley SD.

Theor Appl Genet. 2004 Feb;108(3):485-96. Epub 2004 Jan 22.

PMID:
14740082
36.

The making of a bell pepper-shaped tomato fruit: identification of loci controlling fruit morphology in Yellow Stuffer tomato.

van der Knaap E, Tanksley SD.

Theor Appl Genet. 2003 Jun;107(1):139-47. Epub 2003 Mar 21.

PMID:
12835939
38.

QTL analysis of morphological traits in eggplant and implications for conservation of gene function during evolution of solanaceous species.

Frary A, Doganlar S, Daunay MC, Tanksley SD.

Theor Appl Genet. 2003 Jul;107(2):359-70. Epub 2003 Apr 3.

PMID:
12677409
39.

Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions.

Van Der Knaap E, Lippman ZB, Tanksley SD.

Theor Appl Genet. 2002 Feb;104(2-3):241-247.

PMID:
12582693
40.

Mapping quantitative trait loci in inbred backcross lines of Lycopersicon pimpinellifolium (LA1589).

Doganlar S, Frary A, Ku HM, Tanksley SD.

Genome. 2002 Dec;45(6):1189-202.

PMID:
12502266
41.

Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations.

Cong B, Liu J, Tanksley SD.

Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13606-11. Epub 2002 Oct 7.

42.

A new class of regulatory genes underlying the cause of pear-shaped tomato fruit.

Liu J, Van Eck J, Cong B, Tanksley SD.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):13302-6. Epub 2002 Sep 19.

44.

Conservation of gene function in the solanaceae as revealed by comparative mapping of domestication traits in eggplant.

Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD.

Genetics. 2002 Aug;161(4):1713-26.

45.

A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the solanaceae.

Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD.

Genetics. 2002 Aug;161(4):1697-711.

46.

Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants.

Fulton TM, Van der Hoeven R, Eannetta NT, Tanksley SD.

Plant Cell. 2002 Jul;14(7):1457-67.

47.

A simple formula useful for positional cloning.

Durrett RT, Chen KY, Tanksley SD.

Genetics. 2002 Jan;160(1):353-5.

49.

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