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Comparative analysis of bacterial communities associated with healthy and diseased corals in the Indonesian sea.

Mhuantong W, Nuryadi H, Trianto A, Sabdono A, Tangphatsornruang S, Eurwilaichitr L, Kanokratana P, Champreda V.

PeerJ. 2019 Dec 19;7:e8137. doi: 10.7717/peerj.8137. eCollection 2019.


Heat-induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea.

Pootakham W, Mhuantong W, Yoocha T, Putchim L, Jomchai N, Sonthirod C, Naktang C, Kongkachana W, Tangphatsornruang S.

Microbiologyopen. 2019 Dec;8(12):e935. doi: 10.1002/mbo3.935. Epub 2019 Sep 23.


Rice height QTLs in KDML105 chromosome segment substitution lines.

Shearman JR, Vejchasarn P, Naktang C, Phansenee Y, Jomchai N, Lanceras-Siangliw J, Tangphatsornruang S, Toojinda T.

Genomics. 2019 Sep 6. pii: S0888-7543(19)30384-2. doi: 10.1016/j.ygeno.2019.09.003. [Epub ahead of print]


Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential.

Wiseschart A, Mhuantong W, Tangphatsornruang S, Chantasingh D, Pootanakit K.

BMC Microbiol. 2019 Jun 27;19(1):144. doi: 10.1186/s12866-019-1521-8.


Complete Genome Sequences of Four Serotypes of Dengue Virus Prototype Continuously Maintained in the Laboratory.

Chin-Inmanu K, Suttitheptumrong A, Sangsrakru D, Mairiang D, Tangphatsornruang S, Malasit P, Suriyaphol P.

Microbiol Resour Announc. 2019 May 9;8(19). pii: e00199-19. doi: 10.1128/MRA.00199-19.


Dynamics of biogenic amines and bacterial communities in a Thai fermented pork product Nham.

Santiyanont P, Chantarasakha K, Tepkasikul P, Srimarut Y, Mhuantong W, Tangphatsornruang S, Zo YG, Chokesajjawatee N.

Food Res Int. 2019 May;119:110-118. doi: 10.1016/j.foodres.2019.01.060. Epub 2019 Jan 24.


Transcriptome analysis of oil palm inflorescences revealed candidate genes for an auxin signaling pathway involved in parthenocarpy.

Somyong S, Walayaporn K, Jomchai N, Naktang C, Yodyingyong T, Phumichai C, Pootakham W, Tangphatsornruang S.

PeerJ. 2018 Dec 17;6:e5975. doi: 10.7717/peerj.5975. eCollection 2018.


Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing.

Piriyapongsa J, Kaewprommal P, Vaiwsri S, Anuntakarun S, Wirojsirasak W, Punpee P, Klomsa-Ard P, Shaw PJ, Pootakham W, Yoocha T, Sangsrakru D, Tangphatsornruang S, Tongsima S, Tragoonrung S.

PeerJ. 2018 Oct 30;6:e5818. doi: 10.7717/peerj.5818. eCollection 2018.


Genome-wide association mapping of virulence gene in rice blast fungus Magnaporthe oryzae using a genotyping by sequencing approach.

Korinsak S, Tangphatsornruang S, Pootakham W, Wanchana S, Plabpla A, Jantasuriyarat C, Patarapuwadol S, Vanavichit A, Toojinda T.

Genomics. 2019 Jul;111(4):661-668. doi: 10.1016/j.ygeno.2018.05.011. Epub 2018 May 15.


Dynamics of coral-associated microbiomes during a thermal bleaching event.

Pootakham W, Mhuantong W, Putchim L, Yoocha T, Sonthirod C, Kongkachana W, Sangsrakru D, Naktang C, Jomchai N, Thongtham N, Tangphatsornruang S.

Microbiologyopen. 2018 Oct;7(5):e00604. doi: 10.1002/mbo3.604. Epub 2018 Mar 23.


Probing the Phylogenomics and Putative Pathogenicity Genes of Pythium insidiosum by Oomycete Genome Analyses.

Rujirawat T, Patumcharoenpol P, Lohnoo T, Yingyong W, Kumsang Y, Payattikul P, Tangphatsornruang S, Suriyaphol P, Reamtong O, Garg G, Kittichotirat W, Krajaejun T.

Sci Rep. 2018 Mar 7;8(1):4135. doi: 10.1038/s41598-018-22540-1.


Characterization of cellulolytic microbial consortium enriched on Napier grass using metagenomic approaches.

Kanokratana P, Wongwilaiwalin S, Mhuantong W, Tangphatsornruang S, Eurwilaichitr L, Champreda V.

J Biosci Bioeng. 2018 Apr;125(4):439-447. doi: 10.1016/j.jbiosc.2017.10.014. Epub 2017 Nov 21.


Brown rice and retrograded brown rice alleviate inflammatory response in dextran sulfate sodium (DSS)-induced colitis mice.

Praengam K, Sahasakul Y, Kupradinun P, Sakarin S, Sanitchua W, Rungsipipat A, Rattanapinyopituk K, Angkasekwinai P, Changsri K, Mhuantong W, Tangphatsornruang S, Tuntipopipat S.

Food Funct. 2017 Dec 13;8(12):4630-4643. doi: 10.1039/c7fo00305f.


Transcriptome-based discovery of pathways and genes related to reproduction of the black tiger shrimp (Penaeus monodon).

Uengwetwanit T, Ponza P, Sangsrakru D, Wichadakul D, Ingsriswang S, Leelatanawit R, Klinbunga S, Tangphatsornruang S, Karoonuthaisiri N.

Mar Genomics. 2018 Feb;37:69-73. doi: 10.1016/j.margen.2017.08.007. Epub 2017 Sep 9.


Microbial communities in the reef water at Kham Island, lower Gulf of Thailand.

Somboonna N, Wilantho A, Monanunsap S, Chavanich S, Tangphatsornruang S, Tongsima S.

PeerJ. 2017 Aug 14;5:e3625. doi: 10.7717/peerj.3625. eCollection 2017.


Genome-wide association mapping of latex yield and girth in Amazonian accessions of Hevea brasiliensis grown in a suboptimal climate zone.

Chanroj V, Rattanawong R, Phumichai T, Tangphatsornruang S, Ukoskit K.

Genomics. 2017 Oct;109(5-6):475-484. doi: 10.1016/j.ygeno.2017.07.005. Epub 2017 Jul 24.


Targeted disruption of the polyketide synthase gene pks15 affects virulence against insects and phagocytic survival in the fungus Beauveria bassiana.

Toopaang W, Phonghanpot S, Punya J, Panyasiri C, Klamchao K, Wasuwan R, Srisuksam C, Sangsrakru D, Sonthirod C, Tangphatsornruang S, Tanticharoen M, Amnuaykanjanasin A.

Fungal Biol. 2017 Aug;121(8):664-675. doi: 10.1016/j.funbio.2017.04.007. Epub 2017 May 6.


High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system.

Pootakham W, Mhuantong W, Yoocha T, Putchim L, Sonthirod C, Naktang C, Thongtham N, Tangphatsornruang S.

Sci Rep. 2017 Jun 5;7(1):2774. doi: 10.1038/s41598-017-03139-4.


De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species.

Pootakham W, Sonthirod C, Naktang C, Ruang-Areerate P, Yoocha T, Sangsrakru D, Theerawattanasuk K, Rattanawong R, Lekawipat N, Tangphatsornruang S.

Sci Rep. 2017 Feb 2;7:41457. doi: 10.1038/srep41457.


Effect of freeze-thaw process on physical properties, microbial activities and population structures of anaerobic sludge.

Phalakornkule C, Nuchdang S, Khemkhao M, Mhuantong W, Wongwilaiwalin S, Tangphatsornruang S, Champreda V, Kitsuwan J, Vatanyoopaisarn S.

J Biosci Bioeng. 2017 Apr;123(4):474-481. doi: 10.1016/j.jbiosc.2016.11.005. Epub 2016 Dec 19.


Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients.

Jitwasinkul T, Suriyaphol P, Tangphatsornruang S, Hansen MA, Hansen LH, Sørensen SJ, Permpikul C, Rongrungruang Y, Tribuddharat C.

J Glob Antimicrob Resist. 2016 Sep;6:57-66. doi: 10.1016/j.jgar.2016.03.001. Epub 2016 Apr 19.


The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads.

Shearman JR, Sonthirod C, Naktang C, Pootakham W, Yoocha T, Sangsrakru D, Jomchai N, Tragoonrung S, Tangphatsornruang S.

Sci Rep. 2016 Aug 17;6:31533. doi: 10.1038/srep31533.


Differentially expressed transcripts in stomach of Penaeus monodon in response to AHPND infection.

Soonthornchai W, Chaiyapechara S, Klinbunga S, Thongda W, Tangphatsornruang S, Yoocha T, Jarayabhand P, Jiravanichpaisal P.

Dev Comp Immunol. 2016 Dec;65:53-63. doi: 10.1016/j.dci.2016.06.013. Epub 2016 Jun 20.


Comparative Study of Bacterial Communities in Nepenthes Pitchers and Their Correlation to Species and Fluid Acidity.

Kanokratana P, Mhuanthong W, Laothanachareon T, Tangphatsornruang S, Eurwilaichitr L, Kruetreepradit T, Mayes S, Champreda V.

Microb Ecol. 2016 Aug;72(2):381-93. doi: 10.1007/s00248-016-0798-5. Epub 2016 Jun 10.


ACC oxidase and miRNA 159a, and their involvement in fresh fruit bunch yield (FFB) via sex ratio determination in oil palm.

Somyong S, Poopear S, Sunner SK, Wanlayaporn K, Jomchai N, Yoocha T, Ukoskit K, Tangphatsornruang S, Tragoonrung S.

Mol Genet Genomics. 2016 Jun;291(3):1243-57. doi: 10.1007/s00438-016-1181-4. Epub 2016 Feb 20.


Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi.

Wichadakul D, Kobmoo N, Ingsriswang S, Tangphatsornruang S, Chantasingh D, Luangsa-ard JJ, Eurwilaichitr L.

BMC Genomics. 2015 Oct 28;16:881. doi: 10.1186/s12864-015-2101-4.


Comparative mitochondrial genome analysis of Pythium insidiosum and related oomycete species provides new insights into genetic variation and phylogenetic relationships.

Tangphatsornruang S, Ruang-Areerate P, Sangsrakru D, Rujirawat T, Lohnoo T, Kittichotirat W, Patumcharoenpol P, Grenville-Briggs LJ, Krajaejun T.

Gene. 2016 Jan 1;575(1):34-41. doi: 10.1016/j.gene.2015.08.036. Epub 2015 Aug 21.


Draft Genome Sequence of the Pathogenic Oomycete Pythium insidiosum Strain Pi-S, Isolated from a Patient with Pythiosis.

Rujirawat T, Patumcharoenpol P, Lohnoo T, Yingyong W, Lerksuthirat T, Tangphatsornruang S, Suriyaphol P, Grenville-Briggs LJ, Garg G, Kittichotirat W, Krajaejun T.

Genome Announc. 2015 Jun 18;3(3). pii: e00574-15. doi: 10.1128/genomeA.00574-15.


A single base substitution in BADH/AMADH is responsible for fragrance in cucumber (Cucumis sativus L.), and development of SNAP markers for the fragrance.

Yundaeng C, Somta P, Tangphatsornruang S, Chankaew S, Srinives P.

Theor Appl Genet. 2015 Sep;128(9):1881-92. doi: 10.1007/s00122-015-2554-5. Epub 2015 Jun 17.


Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS).

Pootakham W, Ruang-Areerate P, Jomchai N, Sonthirod C, Sangsrakru D, Yoocha T, Theerawattanasuk K, Nirapathpongporn K, Romruensukharom P, Tragoonrung S, Tangphatsornruang S.

Front Plant Sci. 2015 May 27;6:367. doi: 10.3389/fpls.2015.00367. eCollection 2015.


Survey of Microbial Diversity in Flood Areas during Thailand 2011 Flood Crisis Using High-Throughput Tagged Amplicon Pyrosequencing.

Mhuantong W, Wongwilaiwalin S, Laothanachareon T, Eurwilaichitr L, Tangphatsornruang S, Boonchayaanant B, Limpiyakorn T, Pattaragulwanit K, Punmatharith T, McEvoy J, Khan E, Rachakornkij M, Champreda V.

PLoS One. 2015 May 28;10(5):e0128043. doi: 10.1371/journal.pone.0128043. eCollection 2015.


SNP identification from RNA sequencing and linkage map construction of rubber tree for anchoring the draft genome.

Shearman JR, Sangsrakru D, Jomchai N, Ruang-Areerate P, Sonthirod C, Naktang C, Theerawattanasuk K, Tragoonrung S, Tangphatsornruang S.

PLoS One. 2015 Apr 1;10(4):e0121961. doi: 10.1371/journal.pone.0121961. eCollection 2015.


Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities.

Mhuantong W, Charoensawan V, Kanokratana P, Tangphatsornruang S, Champreda V.

Biotechnol Biofuels. 2015 Feb 8;8:16. doi: 10.1186/s13068-015-0200-8. eCollection 2015.


Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS).

Pootakham W, Jomchai N, Ruang-Areerate P, Shearman JR, Sonthirod C, Sangsrakru D, Tragoonrung S, Tangphatsornruang S.

Genomics. 2015 May;105(5-6):288-95. doi: 10.1016/j.ygeno.2015.02.002. Epub 2015 Feb 20.


Large-scale SNP discovery through RNA sequencing and SNP genotyping by targeted enrichment sequencing in cassava (Manihot esculenta Crantz).

Pootakham W, Shearman JR, Ruang-Areerate P, Sonthirod C, Sangsrakru D, Jomchai N, Yoocha T, Triwitayakorn K, Tragoonrung S, Tangphatsornruang S.

PLoS One. 2014 Dec 31;9(12):e116028. doi: 10.1371/journal.pone.0116028. eCollection 2014.


Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.

Juntawong P, Sirikhachornkit A, Pimjan R, Sonthirod C, Sangsrakru D, Yoocha T, Tangphatsornruang S, Srinives P.

Front Plant Sci. 2014 Dec 2;5:658. doi: 10.3389/fpls.2014.00658. eCollection 2014.


The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness.

Somyong S, Poopear S, Jomchai N, Uthaipaisanwong P, Ruang-Areerate P, Sangsrakru D, Sonthirod C, Ukoskit K, Tragoonrung S, Tangphatsornruang S.

Funct Integr Genomics. 2015 May;15(3):349-62. doi: 10.1007/s10142-014-0423-y. Epub 2014 Dec 12.


Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum.

Krajaejun T, Lerksuthirat T, Garg G, Lowhnoo T, Yingyong W, Khositnithikul R, Tangphatsornruang S, Suriyaphol P, Ranganathan S, Sullivan TD.

Fungal Biol. 2014 Jul;118(7):640-53. doi: 10.1016/j.funbio.2014.01.009. Epub 2014 Feb 6.


Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand.

Somboonna N, Wilantho A, Assawamakin A, Monanunsap S, Sangsrakru D, Tangphatsornruang S, Tongsima S.

BMC Genomics. 2014 Jul 18;15:607. doi: 10.1186/1471-2164-15-607.


Characterization of rubber tree microRNA in phytohormone response using large genomic DNA libraries, promoter sequence and gene expression analysis.

Kanjanawattanawong S, Tangphatsornruang S, Triwitayakorn K, Ruang-areerate P, Sangsrakru D, Poopear S, Somyong S, Narangajavana J.

Mol Genet Genomics. 2014 Oct;289(5):921-33. doi: 10.1007/s00438-014-0862-0. Epub 2014 May 26.


Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials.

Somboonna N, Wilantho A, Jankaew K, Assawamakin A, Sangsrakru D, Tangphatsornruang S, Tongsima S.

PLoS One. 2014 Apr 7;9(4):e94236. doi: 10.1371/journal.pone.0094236. eCollection 2014.


Determination of the half-life of chloroplast transcripts in tobacco leaves.

Tangphatsornruang S, Gray JC.

Methods Mol Biol. 2014;1132:221-34. doi: 10.1007/978-1-62703-995-6_13.


Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.

Shearman JR, Sangsrakru D, Ruang-Areerate P, Sonthirod C, Uthaipaisanwong P, Yoocha T, Poopear S, Theerawattanasuk K, Tragoonrung S, Tangphatsornruang S.

BMC Plant Biol. 2014 Feb 10;14:45. doi: 10.1186/1471-2229-14-45.


Gene discovery and functional marker development for fragrance in sorghum (Sorghum bicolor (L.) Moench).

Yundaeng C, Somta P, Tangphatsornruang S, Wongpornchai S, Srinives P.

Theor Appl Genet. 2013 Nov;126(11):2897-906. doi: 10.1007/s00122-013-2180-z. Epub 2013 Aug 22.


Quantitative trait loci and candidate genes associated with starch pasting viscosity characteristics in cassava (Manihot esculenta Crantz).

Thanyasiriwat T, Sraphet S, Whankaew S, Boonseng O, Bao J, Lightfoot DA, Tangphatsornruang S, Triwitayakorn K.

Plant Biol (Stuttg). 2014 Jan;16(1):197-207. doi: 10.1111/plb.12022. Epub 2013 Apr 24.


Bacterial population in intestines of the black tiger shrimp (Penaeus monodon) under different growth stages.

Rungrassamee W, Klanchui A, Chaiyapechara S, Maibunkaew S, Tangphatsornruang S, Jiravanichpaisal P, Karoonuthaisiri N.

PLoS One. 2013;8(4):e60802. doi: 10.1371/journal.pone.0060802. Epub 2013 Apr 5.


Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site.

Kanokratana P, Mhuantong W, Laothanachareon T, Tangphatsornruang S, Eurwilaichitr L, Pootanakit K, Champreda V.

Microb Ecol. 2013 Aug;66(2):322-34. doi: 10.1007/s00248-013-0209-0. Epub 2013 Mar 17.


Transcriptome analysis of normal and mantled developing oil palm flower and fruit.

Shearman JR, Jantasuriyarat C, Sangsrakru D, Yoocha T, Vannavichit A, Tragoonrung S, Tangphatsornruang S.

Genomics. 2013 May;101(5):306-12. doi: 10.1016/j.ygeno.2013.02.012. Epub 2013 Mar 5.


Comparative analysis of microbial profiles in cow rumen fed with different dietary fiber by tagged 16S rRNA gene pyrosequencing.

Thoetkiattikul H, Mhuantong W, Laothanachareon T, Tangphatsornruang S, Pattarajinda V, Eurwilaichitr L, Champreda V.

Curr Microbiol. 2013 Aug;67(2):130-7. doi: 10.1007/s00284-013-0336-3. Epub 2013 Mar 8.


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