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Items: 45

1.

Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread.

Abbondio M, Palomba A, Tanca A, Fraumene C, Pagnozzi D, Serra M, Marongiu F, Laconi E, Uzzau S.

Front Microbiol. 2019 Jul 30;10:1733. doi: 10.3389/fmicb.2019.01733. eCollection 2019.

2.

Unipept 4.0: Functional Analysis of Metaproteome Data.

Gurdeep Singh R, Tanca A, Palomba A, Van der Jeugt F, Verschaffelt P, Uzzau S, Martens L, Dawyndt P, Mesuere B.

J Proteome Res. 2019 Feb 1;18(2):606-615. doi: 10.1021/acs.jproteome.8b00716. Epub 2018 Dec 4.

PMID:
30465426
3.

Clostridial Butyrate Biosynthesis Enzymes Are Significantly Depleted in the Gut Microbiota of Nonobese Diabetic Mice.

Tanca A, Palomba A, Fraumene C, Manghina V, Silverman M, Uzzau S.

mSphere. 2018 Oct 24;3(5). pii: e00492-18. doi: 10.1128/mSphere.00492-18.

4.

Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota.

Tanca A, Abbondio M, Palomba A, Fraumene C, Marongiu F, Serra M, Pagnozzi D, Laconi E, Uzzau S.

Sci Rep. 2018 Oct 3;8(1):14778. doi: 10.1038/s41598-018-33100-y.

5.

Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis.

Xiao J, Tanca A, Jia B, Yang R, Wang B, Zhang Y, Li J.

J Proteome Res. 2018 Apr 6;17(4):1596-1605. doi: 10.1021/acs.jproteome.7b00894. Epub 2018 Feb 26.

PMID:
29436230
6.

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD.

Proteomes. 2018 Jan 31;6(1). pii: E7. doi: 10.3390/proteomes6010007.

7.

The Sarda Sheep Host Fecal Proteome.

Palomba A, Tanca A, Addis MF, Pagnozzi D, Uzzau S.

Proteomics. 2018 Feb;18(3-4). doi: 10.1002/pmic.201700272. Epub 2018 Feb 6.

PMID:
29328543
8.

Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb.

Palomba A, Tanca A, Fraumene C, Abbondio M, Fancello F, Atzori AS, Uzzau S.

Proteomes. 2017 Dec 18;5(4). pii: E36. doi: 10.3390/proteomes5040036.

9.

Caloric restriction promotes rapid expansion and long-lasting increase of Lactobacillus in the rat fecal microbiota.

Fraumene C, Manghina V, Cadoni E, Marongiu F, Abbondio M, Serra M, Palomba A, Tanca A, Laconi E, Uzzau S.

Gut Microbes. 2018 Mar 4;9(2):104-114. doi: 10.1080/19490976.2017.1371894. Epub 2017 Sep 21.

10.

Protective major histocompatibility complex allele prevents type 1 diabetes by shaping the intestinal microbiota early in ontogeny.

Silverman M, Kua L, Tanca A, Pala M, Palomba A, Tanes C, Bittinger K, Uzzau S, Benoist C, Mathis D.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):9671-9676. doi: 10.1073/pnas.1712280114. Epub 2017 Aug 22.

11.

Potential and active functions in the gut microbiota of a healthy human cohort.

Tanca A, Abbondio M, Palomba A, Fraumene C, Manghina V, Cucca F, Fiorillo E, Uzzau S.

Microbiome. 2017 Jul 14;5(1):79. doi: 10.1186/s40168-017-0293-3.

12.

Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse.

Tanca A, Manghina V, Fraumene C, Palomba A, Abbondio M, Deligios M, Silverman M, Uzzau S.

Front Microbiol. 2017 Mar 14;8:391. doi: 10.3389/fmicb.2017.00391. eCollection 2017.

13.

Diversity and functions of the sheep faecal microbiota: a multi-omic characterization.

Tanca A, Fraumene C, Manghina V, Palomba A, Abbondio M, Deligios M, Pagnozzi D, Addis MF, Uzzau S.

Microb Biotechnol. 2017 May;10(3):541-554. doi: 10.1111/1751-7915.12462. Epub 2017 Feb 6.

14.

A first immunohistochemistry study of transketolase and transketolase-like 1 expression in canine hyperplastic and neoplastic mammary lesions.

Burrai GP, Tanca A, Cubeddu T, Abbondio M, Polinas M, Addis MF, Antuofermo E.

BMC Vet Res. 2017 Jan 31;13(1):38. doi: 10.1186/s12917-017-0961-3.

15.

Bone mineral density and growth in children with coeliac disease on a gluten free-diet.

Tuna Kırsaçlıoğlu C, Kuloğlu Z, Tanca A, Küçük NÖ, Aycan Z, Öcal G, Ensari A, Kalaycı AG, Girgin N.

Turk J Med Sci. 2016 Dec 20;46(6):1816-1821. doi: 10.3906/sag-1508-52.

PMID:
28081333
16.

The impact of sequence database choice on metaproteomic results in gut microbiota studies.

Tanca A, Palomba A, Fraumene C, Pagnozzi D, Manghina V, Deligios M, Muth T, Rapp E, Martens L, Addis MF, Uzzau S.

Microbiome. 2016 Sep 27;4(1):51.

17.

The bovine milk microbiota: insights and perspectives from -omics studies.

Addis MF, Tanca A, Uzzau S, Oikonomou G, Bicalho RC, Moroni P.

Mol Biosyst. 2016 Jul 19;12(8):2359-72. doi: 10.1039/c6mb00217j. Review.

18.

Protein expression changes induced in a malignant melanoma cell line by the curcumin analogue compound D6.

Pisano M, Palomba A, Tanca A, Pagnozzi D, Uzzau S, Addis MF, Dettori MA, Fabbri D, Palmieri G, Rozzo C.

BMC Cancer. 2016 May 18;16:317. doi: 10.1186/s12885-016-2362-6.

19.

Atypical carcinoid and large cell neuroendocrine carcinoma of the lung: a proteomic dataset from formalin-fixed archival samples.

Tanca A, Addis MF, Pisanu S, Abbondio M, Pagnozzi D, Eccher A, Rindi G, Cossu-Rocca P, Uzzau S, Fanciulli G.

Data Brief. 2016 Mar 9;7:529-31. doi: 10.1016/j.dib.2016.02.083. eCollection 2016 Jun.

20.

Proteomic analysis of Rhodotorula mucilaginosa: dealing with the issues of a non-conventional yeast.

Addis MF, Tanca A, Landolfo S, Abbondio M, Cutzu R, Biosa G, Pagnozzi D, Uzzau S, Mannazzu I.

Yeast. 2016 Aug;33(8):433-49. doi: 10.1002/yea.3162. Epub 2016 May 13.

21.

A human gut metaproteomic dataset from stool samples pretreated or not by differential centrifugation.

Tanca A, Palomba A, Pisanu S, Addis MF, Uzzau S.

Data Brief. 2015 Jul 26;4:559-62. doi: 10.1016/j.dib.2015.07.014. eCollection 2015 Sep.

22.

Investigation of HER2 expression in canine mammary tumors by antibody-based, transcriptomic and mass spectrometry analysis: is the dog a suitable animal model for human breast cancer?

Burrai GP, Tanca A, De Miglio MR, Abbondio M, Pisanu S, Polinas M, Pirino S, Mohammed SI, Uzzau S, Addis MF, Antuofermo E.

Tumour Biol. 2015 Nov;36(11):9083-91. doi: 10.1007/s13277-015-3661-2. Epub 2015 Jun 19.

PMID:
26088453
23.

Draft Genome Sequence of Rhodotorula mucilaginosa, an Emergent Opportunistic Pathogen.

Deligios M, Fraumene C, Abbondio M, Mannazzu I, Tanca A, Addis MF, Uzzau S.

Genome Announc. 2015 Apr 9;3(2). pii: e00201-15. doi: 10.1128/genomeA.00201-15.

24.

Full-length protein extraction protocols and gel-based downstream applications in formalin-fixed tissue proteomics.

Tanca A, Uzzau S, Addis MF.

Methods Mol Biol. 2015;1295:117-34. doi: 10.1007/978-1-4939-2550-6_11.

PMID:
25820719
25.

Enrichment or depletion? The impact of stool pretreatment on metaproteomic characterization of the human gut microbiota.

Tanca A, Palomba A, Pisanu S, Addis MF, Uzzau S.

Proteomics. 2015 Oct;15(20):3474-85. doi: 10.1002/pmic.201400573. Epub 2015 Mar 19.

PMID:
25677681
26.

A straightforward and efficient analytical pipeline for metaproteome characterization.

Tanca A, Palomba A, Pisanu S, Deligios M, Fraumene C, Manghina V, Pagnozzi D, Addis MF, Uzzau S.

Microbiome. 2014 Dec 10;2(1):49. doi: 10.1186/s40168-014-0049-2. eCollection 2014.

27.

Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue.

Tanca A, Abbondio M, Pisanu S, Pagnozzi D, Uzzau S, Addis MF.

Clin Proteomics. 2014 Jul 8;11(1):28. doi: 10.1186/1559-0275-11-28. eCollection 2014.

28.

Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture.

Tanca A, Palomba A, Deligios M, Cubeddu T, Fraumene C, Biosa G, Pagnozzi D, Addis MF, Uzzau S.

PLoS One. 2013 Dec 9;8(12):e82981. doi: 10.1371/journal.pone.0082981. eCollection 2013.

29.

Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome.

Tanca A, Biosa G, Pagnozzi D, Addis MF, Uzzau S.

Proteomics. 2013 Sep;13(17):2597-607. doi: 10.1002/pmic.201200478. Epub 2013 Aug 7.

PMID:
23784971
30.

Proteomic characterization of hepatitis C eradication: enzyme switch in the healing liver.

Babudieri S, Soddu A, Nieddu P, Tanca A, Madeddu G, Addis MF, Pagnozzi D, Cossu-Rocca P, Massarelli G, Dore MP, Uzzau S, Mura MS.

J Clin Virol. 2013 Jul;57(3):274-8. doi: 10.1016/j.jcv.2013.03.002. Epub 2013 Mar 23.

PMID:
23529134
31.

High throughput genomic and proteomic technologies in the fight against infectious diseases.

Tanca A, Deligios M, Addis MF, Uzzau S.

J Infect Dev Ctries. 2013 Mar 14;7(3):182-90. doi: 10.3855/jidc.3027. Review.

32.

Application of 2D-DIGE to formalin-fixed diseased tissue samples from hospital repositories: results from four case studies.

Tanca A, Pisanu S, Biosa G, Pagnozzi D, Antuofermo E, Burrai GP, Canzonieri V, Cossu-Rocca P, De Re V, Eccher A, Fanciulli G, Rocca S, Uzzau S, Addis MF.

Proteomics Clin Appl. 2013 Apr;7(3-4):252-63. doi: 10.1002/prca.201200054. Epub 2013 Mar 6.

PMID:
23090899
33.

Comparability of differential proteomics data generated from paired archival fresh-frozen and formalin-fixed samples by GeLC-MS/MS and spectral counting.

Tanca A, Pagnozzi D, Burrai GP, Polinas M, Uzzau S, Antuofermo E, Addis MF.

J Proteomics. 2012 Dec 21;77:561-76. doi: 10.1016/j.jprot.2012.09.033. Epub 2012 Oct 5.

PMID:
23043969
34.

Evaluation of the suitability of archival Bouin-fixed paraffin-embedded tissue specimens to proteomic investigation.

Tanca A, Addis MF, Simula MP, Pagnozzi D, Biosa G, Pisanu S, Garziera M, Cannizzaro R, Canzonieri V, De Re V, Uzzau S.

Electrophoresis. 2012 May;33(9-10):1375-84. doi: 10.1002/elps.201200026.

PMID:
22648804
35.

Setting proteins free: progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues.

Tanca A, Pagnozzi D, Addis MF.

Proteomics Clin Appl. 2012 Jan;6(1-2):7-21. doi: 10.1002/prca.201100044. Epub 2011 Dec 27. Review.

PMID:
22213597
36.

Comparison of blood serum peptide enrichment methods by Tricine SDS-PAGE and mass spectrometry.

Biosa G, Addis MF, Tanca A, Pisanu S, Roggio T, Uzzau S, Pagnozzi D.

J Proteomics. 2011 Dec 10;75(1):93-9. doi: 10.1016/j.jprot.2011.06.025. Epub 2011 Jul 3.

PMID:
21757041
37.

Proteomics and pathway analyses of the milk fat globule in sheep naturally infected by Mycoplasma agalactiae provide indications of the in vivo response of the mammary epithelium to bacterial infection.

Addis MF, Pisanu S, Ghisaura S, Pagnozzi D, Marogna G, Tanca A, Biosa G, Cacciotto C, Alberti A, Pittau M, Roggio T, Uzzau S.

Infect Immun. 2011 Sep;79(9):3833-45. doi: 10.1128/IAI.00040-11. Epub 2011 Jun 20.

38.

Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues.

Tanca A, Pagnozzi D, Falchi G, Biosa G, Rocca S, Foddai G, Uzzau S, Addis MF.

J Proteomics. 2011 Jun 10;74(7):1015-21. doi: 10.1016/j.jprot.2011.03.015. Epub 2011 Mar 23.

PMID:
21439415
39.

Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues.

Tanca A, Pagnozzi D, Falchi G, Tonelli R, Rocca S, Roggio T, Uzzau S, Addis MF.

Proteomics. 2011 Mar;11(5):1005-11. doi: 10.1002/pmic.201000353. Epub 2011 Jan 31.

PMID:
21337705
40.

The sheep milk fat globule membrane proteome.

Pisanu S, Ghisaura S, Pagnozzi D, Biosa G, Tanca A, Roggio T, Uzzau S, Addis MF.

J Proteomics. 2011 Mar 1;74(3):350-8. doi: 10.1016/j.jprot.2010.11.011. Epub 2010 Dec 13.

PMID:
21147282
41.

Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives.

Tanca A, Addis MF, Pagnozzi D, Cossu-Rocca P, Tonelli R, Falchi G, Eccher A, Roggio T, Fanciulli G, Uzzau S.

J Proteomics. 2011 Mar 1;74(3):359-70. doi: 10.1016/j.jprot.2010.12.001. Epub 2010 Dec 13.

PMID:
21147281
42.

2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues.

Addis MF, Tanca A, Pagnozzi D, Rocca S, Uzzau S.

Proteomics. 2009 Sep;9(18):4329-39. doi: 10.1002/pmic.200900010.

PMID:
19718685
43.

Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues.

Addis MF, Tanca A, Pagnozzi D, Crobu S, Fanciulli G, Cossu-Rocca P, Uzzau S.

Proteomics. 2009 Aug;9(15):3815-23. doi: 10.1002/pmic.200800971.

PMID:
19637237
44.

Cryptorchidism with short spermatic vessels: staged orchiopexy preserving spermatic vessels.

Dessanti A, Falchetti D, Iannuccelli M, Milianti S, Altana C, Tanca AR, Ubertazzi M, Strusi GP, Fusillo M.

J Urol. 2009 Sep;182(3):1163-7. doi: 10.1016/j.juro.2009.05.050. Epub 2009 Jul 22.

PMID:
19625047
45.

Reversal of severe parenteral nutrition-associated liver disease in an infant with short bowel syndrome using parenteral fish oil (Omega-3 fatty acids).

Ekema G, Falchetti D, Boroni G, Tanca AR, Altana C, Righetti L, Ridella M, Gambarotti M, Berchich L.

J Pediatr Surg. 2008 Jun;43(6):1191-5. doi: 10.1016/j.jpedsurg.2008.01.005.

PMID:
18558205

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