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Items: 1 to 50 of 107

1.

Publisher Correction: Application and optimization of CRISPR-Cas9-mediated genome engineering in axolotl (Ambystoma mexicanum).

Fei JF, Lou WP, Knapp D, Murawala P, Gerber T, Taniguchi Y, Nowoshilow S, Khattak S, Tanaka EM.

Nat Protoc. 2019 Jan 29. doi: 10.1038/s41596-019-0138-6. [Epub ahead of print]

PMID:
30696984
2.

Broad applicability of a streamlined ethyl cinnamate-based clearing procedure.

Masselink W, Reumann D, Murawala P, Pasierbek P, Taniguchi Y, Bonnay F, Meixner K, Knoblich JA, Tanaka EM.

Development. 2019 Feb 1;146(3). pii: dev166884. doi: 10.1242/dev.166884.

PMID:
30665888
3.

A Comparative Perspective on Brain Regeneration in Amphibians and Teleost Fish.

Lust K, Tanaka EM.

Dev Neurobiol. 2019 May;79(5):424-436. doi: 10.1002/dneu.22665. Epub 2019 Feb 21. Review.

PMID:
30600647
4.

Application and optimization of CRISPR-Cas9-mediated genome engineering in axolotl (Ambystoma mexicanum).

Fei JF, Lou WP, Knapp D, Murawala P, Gerber T, Taniguchi Y, Nowoshilow S, Khattak S, Tanaka EM.

Nat Protoc. 2018 Dec;13(12):2908-2943. doi: 10.1038/s41596-018-0071-0. Erratum in: Nat Protoc. 2019 Jan 29;:.

PMID:
30429597
5.

Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.

Gerber T, Murawala P, Knapp D, Masselink W, Schuez M, Hermann S, Gac-Santel M, Nowoshilow S, Kageyama J, Khattak S, Currie JD, Camp JG, Tanaka EM, Treutlein B.

Science. 2018 Oct 26;362(6413). pii: eaaq0681. doi: 10.1126/science.aaq0681. Epub 2018 Sep 27.

PMID:
30262634
6.

Author Correction: The axolotl genome and the evolution of key tissue formation regulators.

Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, Myers EW.

Nature. 2018 Jul;559(7712):E2. doi: 10.1038/s41586-018-0141-z.

PMID:
29795340
7.

Signaling-Dependent Control of Apical Membrane Size and Self-Renewal in Rosette-Stage Human Neuroepithelial Stem Cells.

Medelnik JP, Roensch K, Okawa S, Del Sol A, Chara O, Mchedlishvili L, Tanaka EM.

Stem Cell Reports. 2018 Jun 5;10(6):1751-1765. doi: 10.1016/j.stemcr.2018.04.018. Epub 2018 May 17.

8.

Regenerating tissues.

Tanaka EM.

Science. 2018 Apr 27;360(6387):374-375. doi: 10.1126/science.aat4588. No abstract available.

PMID:
29700249
9.

The axolotl genome and the evolution of key tissue formation regulators.

Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, Myers EW.

Nature. 2018 Feb 1;554(7690):50-55. doi: 10.1038/nature25458. Epub 2018 Jan 24. Erratum in: Nature. 2018 Jul;559(7712):E2.

PMID:
29364872
10.

Pseudotyped baculovirus is an effective gene expression tool for studying molecular function during axolotl limb regeneration.

Oliveira CR, Lemaitre R, Murawala P, Tazaki A, Drechsel DN, Tanaka EM.

Dev Biol. 2018 Jan 15;433(2):262-275. doi: 10.1016/j.ydbio.2017.10.008. Epub 2017 Nov 30.

11.

Efficient gene knockin in axolotl and its use to test the role of satellite cells in limb regeneration.

Fei JF, Schuez M, Knapp D, Taniguchi Y, Drechsel DN, Tanaka EM.

Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12501-12506. doi: 10.1073/pnas.1706855114. Epub 2017 Oct 31.

12.

Salamander spinal cord regeneration: The ultimate positive control in vertebrate spinal cord regeneration.

Tazaki A, Tanaka EM, Fei JF.

Dev Biol. 2017 Dec 1;432(1):63-71. doi: 10.1016/j.ydbio.2017.09.034. Epub 2017 Oct 10. Review.

13.

A right-handed signalling pathway drives heart looping in vertebrates.

Ocaña OH, Coskun H, Minguillón C, Murawala P, Tanaka EM, Galcerán J, Muñoz-Chápuli R, Nieto MA.

Nature. 2017 Sep 6;549(7670):86-90. doi: 10.1038/nature23454.

14.

Non-model model organisms.

Russell JJ, Theriot JA, Sood P, Marshall WF, Landweber LF, Fritz-Laylin L, Polka JK, Oliferenko S, Gerbich T, Gladfelter A, Umen J, Bezanilla M, Lancaster MA, He S, Gibson MC, Goldstein B, Tanaka EM, Hu CK, Brunet A.

BMC Biol. 2017 Jun 29;15(1):55. doi: 10.1186/s12915-017-0391-5.

15.

Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage.

Kaucka M, Zikmund T, Tesarova M, Gyllborg D, Hellander A, Jaros J, Kaiser J, Petersen J, Szarowska B, Newton PT, Dyachuk V, Li L, Qian H, Johansson AS, Mishina Y, Currie JD, Tanaka EM, Erickson A, Dudley A, Brismar H, Southam P, Coen E, Chen M, Weinstein LS, Hampl A, Arenas E, Chagin AS, Fried K, Adameyko I.

Elife. 2017 Apr 17;6. pii: e25902. doi: 10.7554/eLife.25902.

16.

Reconstitution of a Patterned Neural Tube from Single Mouse Embryonic Stem Cells.

Ishihara K, Ranga A, Lutolf MP, Tanaka EM, Meinhardt A.

Methods Mol Biol. 2017;1597:43-55. doi: 10.1007/978-1-4939-6949-4_4.

PMID:
28361309
17.

Serum Proteases Potentiate BMP-Induced Cell Cycle Re-entry of Dedifferentiating Muscle Cells during Newt Limb Regeneration.

Wagner I, Wang H, Weissert PM, Straube WL, Shevchenko A, Gentzel M, Brito G, Tazaki A, Oliveira C, Sugiura T, Shevchenko A, Simon A, Drechsel DN, Tanaka EM.

Dev Cell. 2017 Mar 27;40(6):608-617.e6. doi: 10.1016/j.devcel.2017.03.002.

18.

Editorial overview: Cell reprogramming, regeneration and repair.

Reddien PW, Tanaka EM.

Curr Opin Genet Dev. 2016 Oct;40:iv-vi. doi: 10.1016/j.gde.2016.10.001. Epub 2016 Oct 26. No abstract available.

PMID:
28340914
19.

Accelerated cell divisions drive the outgrowth of the regenerating spinal cord in axolotls.

Rost F, Rodrigo Albors A, Mazurov V, Brusch L, Deutsch A, Tanaka EM, Chara O.

Elife. 2016 Nov 25;5. pii: e20357. doi: 10.7554/eLife.20357.

20.

Live Imaging of Axolotl Digit Regeneration Reveals Spatiotemporal Choreography of Diverse Connective Tissue Progenitor Pools.

Currie JD, Kawaguchi A, Traspas RM, Schuez M, Chara O, Tanaka EM.

Dev Cell. 2016 Nov 21;39(4):411-423. doi: 10.1016/j.devcel.2016.10.013. Epub 2016 Nov 10.

21.

Neural tube morphogenesis in synthetic 3D microenvironments.

Ranga A, Girgin M, Meinhardt A, Eberle D, Caiazzo M, Tanaka EM, Lutolf MP.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6831-E6839. Epub 2016 Oct 14. Erratum in: Proc Natl Acad Sci U S A. 2017 Apr 11;114(15):E3163.

22.

The Molecular and Cellular Choreography of Appendage Regeneration.

Tanaka EM.

Cell. 2016 Jun 16;165(7):1598-1608. doi: 10.1016/j.cell.2016.05.038. Review.

23.

Tissue- and time-directed electroporation of CAS9 protein-gRNA complexes in vivo yields efficient multigene knockout for studying gene function in regeneration.

Fei JF, Knapp D, Schuez M, Murawala P, Zou Y, Pal Singh S, Drechsel D, Tanaka EM.

NPJ Regen Med. 2016 Jun 9;1:16002. doi: 10.1038/npjregenmed.2016.2. eCollection 2016.

24.

FGF8 and SHH substitute for anterior-posterior tissue interactions to induce limb regeneration.

Nacu E, Gromberg E, Oliveira CR, Drechsel D, Tanaka EM.

Nature. 2016 May 19;533(7603):407-10. doi: 10.1038/nature17972.

PMID:
27120163
25.

MARCKS-like protein is an initiating molecule in axolotl appendage regeneration.

Sugiura T, Wang H, Barsacchi R, Simon A, Tanaka EM.

Nature. 2016 Mar 10;531(7593):237-40. doi: 10.1038/nature16974.

26.

Cellular dynamics underlying regeneration of appropriate segment number during axolotl tail regeneration.

Vincent CD, Rost F, Masselink W, Brusch L, Tanaka EM.

BMC Dev Biol. 2015 Dec 9;15:48. doi: 10.1186/s12861-015-0098-1.

27.

Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration.

Rodrigo Albors A, Tazaki A, Rost F, Nowoshilow S, Chara O, Tanaka EM.

Elife. 2015 Nov 14;4:e10230. doi: 10.7554/eLife.10230.

28.

Transgenesis in axolotl (Ambystoma mexicanum).

Khattak S, Tanaka EM.

Methods Mol Biol. 2015;1290:269-77. doi: 10.1007/978-1-4939-2495-0_21.

PMID:
25740493
29.

High-efficiency electroporation of the spinal cord in larval axolotl.

Rodrigo Albors A, Tanaka EM.

Methods Mol Biol. 2015;1290:115-25. doi: 10.1007/978-1-4939-2495-0_9.

PMID:
25740481
30.

3D reconstitution of the patterned neural tube from embryonic stem cells.

Meinhardt A, Eberle D, Tazaki A, Ranga A, Niesche M, Wilsch-Bräuninger M, Stec A, Schackert G, Lutolf M, Tanaka EM.

Stem Cell Reports. 2014 Dec 9;3(6):987-99. doi: 10.1016/j.stemcr.2014.09.020. Epub 2014 Oct 30.

31.

CRISPR-mediated genomic deletion of Sox2 in the axolotl shows a requirement in spinal cord neural stem cell amplification during tail regeneration.

Fei JF, Schuez M, Tazaki A, Taniguchi Y, Roensch K, Tanaka EM.

Stem Cell Reports. 2014 Sep 9;3(3):444-59. doi: 10.1016/j.stemcr.2014.06.018. Epub 2014 Aug 7.

32.

Characterization of a mouse model with complete RPE loss and its use for RPE cell transplantation.

Carido M, Zhu Y, Postel K, Benkner B, Cimalla P, Karl MO, Kurth T, Paquet-Durand F, Koch E, Münch TA, Tanaka EM, Ader M.

Invest Ophthalmol Vis Sci. 2014 Aug 7;55(8):5431-44. doi: 10.1167/iovs.14-14325.

PMID:
25103259
33.

Modeling human development in 3D culture.

Ader M, Tanaka EM.

Curr Opin Cell Biol. 2014 Dec;31:23-8. doi: 10.1016/j.ceb.2014.06.013. Epub 2014 Jul 15. Review.

PMID:
25033469
35.
36.

Mathematical modeling of regenerative processes.

Chara O, Tanaka EM, Brusch L.

Curr Top Dev Biol. 2014;108:283-317. doi: 10.1016/B978-0-12-391498-9.00011-5. Review.

PMID:
24512713
37.

Germline Transgenic Methods for Tracking Cells and Testing Gene Function during Regeneration in the Axolotl.

Khattak S, Schuez M, Richter T, Knapp D, Haigo SL, Sandoval-Guzmán T, Hradlikova K, Duemmler A, Kerney R, Tanaka EM.

Stem Cell Reports. 2014 Feb 11;2(2):243. doi: 10.1016/j.stemcr.2014.01.017. Epub 2014 Feb 6. No abstract available.

38.

Optimized axolotl (Ambystoma mexicanum) husbandry, breeding, metamorphosis, transgenesis and tamoxifen-mediated recombination.

Khattak S, Murawala P, Andreas H, Kappert V, Schuez M, Sandoval-Guzmán T, Crawford K, Tanaka EM.

Nat Protoc. 2014 Mar;9(3):529-40. doi: 10.1038/nprot.2014.040. Epub 2014 Feb 6.

PMID:
24504478
39.

Progressive specification rather than intercalation of segments during limb regeneration.

Roensch K, Tazaki A, Chara O, Tanaka EM.

Science. 2013 Dec 13;342(6164):1375-9. doi: 10.1126/science.1241796.

41.

Development of fore- and hindlimb muscles in GFP-transgenic axolotls: morphogenesis, the tetrapod bauplan, and new insights on the forelimb-hindlimb enigma.

Diogo R, Tanaka EM.

J Exp Zool B Mol Dev Evol. 2014 Feb;322(2):106-27. doi: 10.1002/jez.b.22552. Epub 2013 Dec 3.

PMID:
24302552
42.

Fundamental differences in dedifferentiation and stem cell recruitment during skeletal muscle regeneration in two salamander species.

Sandoval-Guzmán T, Wang H, Khattak S, Schuez M, Roensch K, Nacu E, Tazaki A, Joven A, Tanaka EM, Simon A.

Cell Stem Cell. 2014 Feb 6;14(2):174-87. doi: 10.1016/j.stem.2013.11.007. Epub 2013 Nov 21.

43.

Germline transgenic methods for tracking cells and testing gene function during regeneration in the axolotl.

Khattak S, Schuez M, Richter T, Knapp D, Haigo SL, Sandoval-Guzmán T, Hradlikova K, Duemmler A, Kerney R, Tanaka EM.

Stem Cell Reports. 2013 Jun 4;1(1):90-103. doi: 10.1016/j.stemcr.2013.03.002. eCollection 2013. Erratum in: Stem Cell Reports. 2014;2(2):243.

44.

Limb regeneration.

Simon A, Tanaka EM.

Wiley Interdiscip Rev Dev Biol. 2013 Mar-Apr;2(2):291-300. doi: 10.1002/wdev.73. Epub 2012 May 29. Review.

PMID:
24009038
45.

Spatial distribution of prominin-1 (CD133)-positive cells within germinative zones of the vertebrate brain.

Jászai J, Graupner S, Tanaka EM, Funk RH, Huttner WB, Brand M, Corbeil D.

PLoS One. 2013 May 27;8(5):e63457. doi: 10.1371/journal.pone.0063457. Print 2013.

46.

Comparative transcriptional profiling of the axolotl limb identifies a tripartite regeneration-specific gene program.

Knapp D, Schulz H, Rascon CA, Volkmer M, Scholz J, Nacu E, Le M, Novozhilov S, Tazaki A, Protze S, Jacob T, Hubner N, Habermann B, Tanaka EM.

PLoS One. 2013 May 1;8(5):e61352. doi: 10.1371/journal.pone.0061352. Print 2013.

47.

Foamy virus for efficient gene transfer in regeneration studies.

Khattak S, Sandoval-Guzmán T, Stanke N, Protze S, Tanaka EM, Lindemann D.

BMC Dev Biol. 2013 May 3;13:17. doi: 10.1186/1471-213X-13-17.

48.

Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

Stewart R, Rascón CA, Tian S, Nie J, Barry C, Chu LF, Ardalani H, Wagner RJ, Probasco MD, Bolin JM, Leng N, Sengupta S, Volkmer M, Habermann B, Tanaka EM, Thomson JA, Dewey CN.

PLoS Comput Biol. 2013;9(3):e1002936. doi: 10.1371/journal.pcbi.1002936. Epub 2013 Mar 7.

49.

Three-dimensional neuroepithelial culture from human embryonic stem cells and its use for quantitative conversion to retinal pigment epithelium.

Zhu Y, Carido M, Meinhardt A, Kurth T, Karl MO, Ader M, Tanaka EM.

PLoS One. 2013;8(1):e54552. doi: 10.1371/journal.pone.0054552. Epub 2013 Jan 24.

50.

Neural crest does not contribute to the neck and shoulder in the axolotl (Ambystoma mexicanum).

Epperlein HH, Khattak S, Knapp D, Tanaka EM, Malashichev YB.

PLoS One. 2012;7(12):e52244. doi: 10.1371/journal.pone.0052244. Epub 2012 Dec 27.

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