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Items: 39

1.

Global Rate Variation in Bony Vertebrates.

Takezaki N.

Genome Biol Evol. 2018 Jul 1;10(7):1803-1815. doi: 10.1093/gbe/evy125.

2.

Support for Lungfish as the Closest Relative of Tetrapods by Using Slowly Evolving Ray-Finned Fish as the Outgroup.

Takezaki N, Nishihara H.

Genome Biol Evol. 2017 Jan 1;9(1):93-101. doi: 10.1093/gbe/evw288.

3.

Resolving the Phylogenetic Position of Coelacanth: The Closest Relative Is Not Always the Most Appropriate Outgroup.

Takezaki N, Nishihara H.

Genome Biol Evol. 2016 Apr 25;8(4):1208-21. doi: 10.1093/gbe/evw071.

4.

POPTREEW: web version of POPTREE for constructing population trees from allele frequency data and computing some other quantities.

Takezaki N, Nei M, Tamura K.

Mol Biol Evol. 2014 Jun;31(6):1622-4. doi: 10.1093/molbev/msu093. Epub 2014 Mar 6.

PMID:
24603277
5.

POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface.

Takezaki N, Nei M, Tamura K.

Mol Biol Evol. 2010 Apr;27(4):747-52. doi: 10.1093/molbev/msp312. Epub 2009 Dec 18.

6.

Genomic drift and evolution of microsatellite DNAs in human populations.

Takezaki N, Nei M.

Mol Biol Evol. 2009 Aug;26(8):1835-40. doi: 10.1093/molbev/msp091. Epub 2009 Apr 30.

PMID:
19406937
7.

Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA.

Takezaki N, Nei M.

Genetics. 2008 Jan;178(1):385-92. doi: 10.1534/genetics.107.081505.

8.

Population data on 15 STR loci using AmpF/STR Identifiler kit in a Malay population living in and around Kuala Lumpur, Malaysia.

Maruyama S, Minaguchi K, Takezaki N, Nambiar P.

Leg Med (Tokyo). 2008 May;10(3):160-2. doi: 10.1016/j.legalmed.2007.11.002. Epub 2008 Jan 3.

PMID:
18180191
9.

The N-acylethanolamine-hydrolyzing acid amidase (NAAA).

Tsuboi K, Takezaki N, Ueda N.

Chem Biodivers. 2007 Aug;4(8):1914-25. Review.

PMID:
17712833
10.

Cell wall extensibility during branch formation in the xanthophycean alga Vaucheria terrestris.

Mine I, Takezaki N, Sekida S, Okuda K.

Planta. 2007 Sep;226(4):971-9. Epub 2007 Jun 7.

PMID:
17554551
11.

Y-chromosomal binary haplogroups in the Japanese population and their relationship to 16 Y-STR polymorphisms.

Nonaka I, Minaguchi K, Takezaki N.

Ann Hum Genet. 2007 Jul;71(Pt 4):480-95. Epub 2007 Feb 2.

12.

Mhc class I genes of the cichlid fish Oreochromis niloticus.

Sato A, Dongak R, Hao L, Takezaki N, Shintani S, Aoki T, Klein J.

Immunogenetics. 2006 Nov;58(11):917-28. Epub 2006 Oct 11.

PMID:
17033824
13.

The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes.

Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N, Klein J.

Mol Biol Evol. 2004 Aug;21(8):1512-24. Epub 2004 May 5.

PMID:
15128875
14.

Variation of HLA class II genes in the Nganasan and Ket, two aboriginal Siberian populations.

Uinuk-Ool TS, Takezaki N, Derbeneva OA, Volodko NV, Sukernik RI.

Eur J Immunogenet. 2004 Feb;31(1):43-51.

PMID:
15009181
15.

Phylogenetic relationships among East African haplochromine fish as revealed by short interspersed elements (SINEs).

Terai Y, Takezaki N, Mayer WE, Tichy H, Takahata N, Klein J, Okada N.

J Mol Evol. 2004 Jan;58(1):64-78.

PMID:
14743315
16.

Microsatellite variation in Japanese and Asian horses and their phylogenetic relationship using a European horse outgroup.

Tozaki T, Takezaki N, Hasegawa T, Ishida N, Kurosawa M, Tomita M, Saitou N, Mukoyama H.

J Hered. 2003 Sep-Oct;94(5):374-80.

PMID:
14557389
17.

Phylogeny of antigen-processing enzymes: cathepsins of a cephalochordate, an agnathan and a bony fish.

Uinuk-Ool TS, Takezaki N, Kuroda N, Figueroa F, Sato A, Samonte IE, Mayer WE, Klein J.

Scand J Immunol. 2003 Oct;58(4):436-48.

18.

Origin and speciation of haplochromine fishes in East African crater lakes investigated by the analysis of their mtDNA, Mhc genes, and SINEs.

Sato A, Takezaki N, Tichy H, Figueroa F, Mayer WE, Klein J.

Mol Biol Evol. 2003 Sep;20(9):1448-62. Epub 2003 May 30.

PMID:
12777512
19.

Identification and characterization of a TAP-family gene in the lamprey.

Uinuk-ool TS, Mayer WE, Sato A, Takezaki N, Benyon L, Cooper MD, Klein J.

Immunogenetics. 2003 Apr;55(1):38-48. Epub 2003 Mar 29.

PMID:
12679854
20.

Macrophage migration inhibitory factor (MIF) of jawed and jawless fishes: implications for its evolutionary origin.

Sato A, Uinuk-ool TS, Kuroda N, Mayer WE, Takezaki N, Dongak R, Figueroa F, Cooper MD, Klein J.

Dev Comp Immunol. 2003 May;27(5):401-12.

PMID:
12631522
21.

Molecular phylogeny of early vertebrates: monophyly of the agnathans as revealed by sequences of 35 genes.

Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Klein J.

Mol Biol Evol. 2003 Feb;20(2):287-92.

PMID:
12598696
22.

Origin and affinities of indigenous Siberian populations as revealed by HLA class II gene frequencies.

Uinuk-Ool TS, Takezaki N, Sukernik RI, Nagl S, Klein J.

Hum Genet. 2002 Mar;110(3):209-26. Epub 2002 Feb 2.

PMID:
11935333
23.

Sequencing of amphioxus PSMB5/8 gene and phylogenetic position of agnathan sequences.

Takezaki N, Zaleska-Rutczynska Z, Figueroa F.

Gene. 2002 Jan 9;282(1-2):179-87.

PMID:
11814690
24.

Conservation of Mhc class III region synteny between zebrafish and human as determined by radiation hybrid mapping.

Sültmann H, Sato A, Murray BW, Takezaki N, Geisler R, Rauch GJ, Klein J.

J Immunol. 2000 Dec 15;165(12):6984-93.

25.

Mhc class II B gene evolution in East African cichlid fishes.

Figueroa F, Mayer WE, Sültmann H, O'hUigin C, Tichy H, Satta Y, Takezaki N, Takahata N, Klein J.

Immunogenetics. 2000 Jun;51(7):556-75.

PMID:
10912507
26.

The origin and age of haplochromine fishes in Lake Victoria, east Africa.

Nagl S, Tichy H, Mayer WE, Takezaki N, Takahata N, Klein J.

Proc Biol Sci. 2000 May 22;267(1447):1049-61.

27.

A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata.

Suzuki H, Tsuchiya K, Takezaki N.

Mol Phylogenet Evol. 2000 Apr;15(1):15-24.

PMID:
10764531
28.

Correct and incorrect vertebrate phylogenies obtained by the entire mitochondrial DNA sequences.

Takezaki N, Gojobori T.

Mol Biol Evol. 1999 May;16(5):590-601.

PMID:
10335652
29.

Tie trees generated by distance methods of phylogenetic reconstruction.

Takezaki N.

Mol Biol Evol. 1998 Jun;15(6):727-37.

PMID:
9615454
30.
31.
32.

The root of the phylogenetic tree of human populations.

Nei M, Takezaki N.

Mol Biol Evol. 1996 Jan;13(1):170-7.

PMID:
8583889
33.

Phylogenetic test of the molecular clock and linearized trees.

Takezaki N, Rzhetsky A, Nei M.

Mol Biol Evol. 1995 Sep;12(5):823-33.

PMID:
7476128
34.

Evolutionary history of the COII/tRNALys intergenic 9 base pair deletion in human mitochondrial DNAs from the Pacific.

Redd AJ, Takezaki N, Sherry ST, McGarvey ST, Sofro AS, Stoneking M.

Mol Biol Evol. 1995 Jul;12(4):604-15.

PMID:
7659016
35.

Molecular phylogeny and divergence times of drosophilid species.

Russo CA, Takezaki N, Nei M.

Mol Biol Evol. 1995 May;12(3):391-404.

PMID:
7739381
36.

Assessing molecular phylogenies.

Nei M, Takezaki N, Sitnikova T.

Science. 1995 Jan 13;267(5195):253-4; author reply 255-6. No abstract available.

PMID:
7809633
37.
38.

Estimation of evolutionary distance for reconstructing molecular phylogenetic trees.

Tajima F, Takezaki N.

Mol Biol Evol. 1994 Mar;11(2):278-86.

PMID:
8170368
39.

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