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Items: 1 to 50 of 269

1.

Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics.

De Corte D, Martínez JM, Cretoiu MS, Takaki Y, Nunoura T, Sintes E, Herndl GJ, Yokokawa T.

Front Microbiol. 2019 Aug 21;10:1801. doi: 10.3389/fmicb.2019.01801. eCollection 2019.

2.

Laboratory values in Japanese children with newly diagnosed inflammatory bowel disease.

Takaki Y, Mizuochi T, Eda K, Ishihara J, Yamashita Y.

Pediatr Int. 2019 Jul;61(7):720-725. doi: 10.1111/ped.13892.

PMID:
31102555
3.

Image quality improvement of random phase-free holograms by addressing the cause of ringing artifacts.

Nagahama Y, Shimobaba T, Kakue T, Takaki Y, Ito T.

Appl Opt. 2019 Mar 20;58(9):2146-2151. doi: 10.1364/AO.58.002146.

PMID:
31044911
4.

Observation of Granulocyte Adsorption in Adacolumn Cellulose Acetate Beads after Granulocytapheresis.

Okuno T, Yoshida Y, Takaki Y, Araki Y, Inoue H, Soejima K, Okado Y, Yoshida K, Imamura H, Hagiwara S, Matsumoto S, Kitano T.

Ther Apher Dial. 2019 Jun;23(3):210-216. doi: 10.1111/1744-9987.12815. Epub 2019 May 26.

PMID:
31025504
5.

Methanofervidicoccus abyssi gen. nov., sp. nov., a hydrogenotrophic methanogen, isolated from a hydrothermal vent chimney in the Mid-Cayman Spreading Center, the Caribbean Sea.

Sakai S, Takaki Y, Miyazaki M, Ogawara M, Yanagawa K, Miyazaki J, Takai K.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1225-1230. doi: 10.1099/ijsem.0.003297. Epub 2019 Mar 7.

PMID:
30843780
6.

Cultivable microbial community in 2-km-deep, 20-million-year-old subseafloor coalbeds through ~1000 days anaerobic bioreactor cultivation.

Imachi H, Tasumi E, Takaki Y, Hoshino T, Schubotz F, Gan S, Tu TH, Saito Y, Yamanaka Y, Ijiri A, Matsui Y, Miyazaki M, Morono Y, Takai K, Hinrichs KU, Inagaki F.

Sci Rep. 2019 Feb 19;9(1):2305. doi: 10.1038/s41598-019-38754-w.

7.

Aggregatilinea lenta gen. nov., sp. nov., a slow-growing, facultatively anaerobic bacterium isolated from subseafloor sediment, and proposal of the new order Aggregatilineales ord. nov. within the class Anaerolineae of the phylum Chloroflexi.

Nakahara N, Nobu MK, Takaki Y, Miyazaki M, Tasumi E, Sakai S, Ogawara M, Yoshida N, Tamaki H, Yamanaka Y, Katayama A, Yamaguchi T, Takai K, Imachi H.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1185-1194. doi: 10.1099/ijsem.0.003291. Epub 2019 Feb 18.

PMID:
30775966
8.

Progressive Hepatic Cirrhosis Early After Allogeneic Hematopoietic Stem Cell Transplantation in a Patient with Chronic Hepatitis C Infection

Kaito S, Doki N, Hishima T, Takaki Y, Ohashi K.

Turk J Haematol. 2019 May 3;36(2):130-133. doi: 10.4274/tjh.galenos.2019.2018.0224. Epub 2019 Feb 5. No abstract available.

9.

Anti-myelin Oligodendrocyte Glycoprotein Antibody-positive Optic Neuritis in a Girl With Ulcerative Colitis.

Konishi KI, Mizuochi T, Takaki Y, Ishihara J, Suda M, Takahashi T, Yamashita Y.

J Pediatr Gastroenterol Nutr. 2019 Oct;69(4):e117. doi: 10.1097/MPG.0000000000002281. No abstract available.

PMID:
30664570
10.

Infantile-onset inflammatory bowel disease in a patient with Hermansky-Pudlak syndrome: a case report.

Ishihara J, Mizuochi T, Uchida T, Takaki Y, Konishi KI, Joo M, Takahashi Y, Yoshioka S, Kusano H, Sasahara Y, Yamashita Y.

BMC Gastroenterol. 2019 Jan 11;19(1):9. doi: 10.1186/s12876-019-0929-9.

11.

Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean.

Wang Y, Huang JM, Cui GJ, Nunoura T, Takaki Y, Li WL, Li J, Gao ZM, Takai K, Zhang AQ, Stepanauskas R.

Environ Microbiol. 2019 Feb;21(2):716-729. doi: 10.1111/1462-2920.14518. Epub 2019 Jan 31.

PMID:
30592124
12.

Impact of hepatic HSP72 on insulin signaling.

Kitano S, Kondo T, Matsuyama R, Ono K, Goto R, Takaki Y, Hanatani S, Sakaguchi M, Igata M, Kawashima J, Motoshima H, Matsumura T, Kai H, Araki E.

Am J Physiol Endocrinol Metab. 2019 Feb 1;316(2):E305-E318. doi: 10.1152/ajpendo.00215.2018. Epub 2018 Dec 11.

PMID:
30532989
13.

Super multi-view near-eye display to solve vergence-accommodation conflict.

Ueno T, Takaki Y.

Opt Express. 2018 Nov 12;26(23):30703-30715. doi: 10.1364/OE.26.030703.

PMID:
30469963
14.

Presacral extramedullary hematopoiesis under treatment with an erythropoietin-stimulating agent for myelodysplasia.

Konishi T, Doki N, Takaki Y, Igarashi A, Ohashi K.

Int J Hematol. 2019 Jan;109(1):1-2. doi: 10.1007/s12185-018-2554-8. Epub 2018 Nov 1. No abstract available.

PMID:
30386961
15.

Nonalcoholic fatty liver disease with prolactin-secreting pituitary adenoma in an adolescent: A case report.

Takaki Y, Mizuochi T, Nishioka J, Eda K, Yatsuga S, Yamashita Y.

Medicine (Baltimore). 2018 Oct;97(42):e12879. doi: 10.1097/MD.0000000000012879.

16.

Compositional and Functional Shifts in the Epibiotic Bacterial Community of Shinkaia crosnieri Baba & Williams (a Squat Lobster from Hydrothermal Vents) during Methane-Fed Rearing.

Watsuji TO, Motoki K, Hada E, Nagai Y, Takaki Y, Yamamoto A, Ueda K, Toyofuku T, Yamamoto H, Takai K.

Microbes Environ. 2018 Dec 28;33(4):348-356. doi: 10.1264/jsme2.ME18072. Epub 2018 Oct 17.

17.

Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus.

Urayama SI, Takaki Y, Nunoura T, Miyamoto N.

Microbes Environ. 2018 Dec 28;33(4):446-449. doi: 10.1264/jsme2.ME18089. Epub 2018 Oct 13.

18.

Successful azathioprine treatment in an adolescent with chronic enteropathy associated with SLCO2A1 gene: A case report.

Eda K, Mizuochi T, Takaki Y, Ushijima K, Umeno J, Yamashita Y.

Medicine (Baltimore). 2018 Oct;97(41):e12811. doi: 10.1097/MD.0000000000012811.

19.

Unveiling the RNA virosphere associated with marine microorganisms.

Urayama SI, Takaki Y, Nishi S, Yoshida-Takashima Y, Deguchi S, Takai K, Nunoura T.

Mol Ecol Resour. 2018 Nov;18(6):1444-1455. doi: 10.1111/1755-0998.12936. Epub 2018 Sep 6.

PMID:
30256532
20.

Adenomyomatosis of the Gallbladder With Pancreaticobiliary Maljunction in a Child.

Eda K, Mizuochi T, Takaki Y, Higashidate N, Hashizume N, Fukahori S, Asagiri K, Yamashita Y, Yagi M.

J Pediatr Gastroenterol Nutr. 2018 Oct;67(4):e82. doi: 10.1097/MPG.0000000000001367. No abstract available.

PMID:
30239487
21.

Flexible retinal image formation by holographic Maxwellian-view display.

Takaki Y, Fujimoto N.

Opt Express. 2018 Sep 3;26(18):22985-22999. doi: 10.1364/OE.26.022985.

PMID:
30184955
22.

Newly developed magnifying endoscopic classification of the Japan Esophageal Society to identify superficial Barrett's esophagus-related neoplasms.

Goda K, Fujisaki J, Ishihara R, Takeuchi M, Takahashi A, Takaki Y, Hirasawa D, Momma K, Amano Y, Yagi K, Furuhashi H, Shimizu T, Kanesaka T, Hashimoto S, Ono Y, Yamagata T, Fujiwara J, Azumi T, Nishikawa M, Watanabe G, Ohkura Y, Oyama T.

Esophagus. 2018 Jun 19. doi: 10.1007/s10388-018-0623-y. [Epub ahead of print]

23.

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

Nunoura T, Nishizawa M, Hirai M, Shimamura S, Harnvoravongchai P, Koide O, Morono Y, Fukui T, Inagaki F, Miyazaki J, Takaki Y, Takai K.

Microbes Environ. 2018 Jul 4;33(2):186-194. doi: 10.1264/jsme2.ME17194. Epub 2018 May 25.

24.

Draft Genome Sequence of Mariprofundus micogutta Strain ET2.

Makita H, Nishi S, Takaki Y, Tanaka E, Nunoura T, Mitsunobu S, Takai K.

Genome Announc. 2018 May 17;6(20). pii: e00342-18. doi: 10.1128/genomeA.00342-18.

25.

Trough level of infliximab is useful for assessing mucosal healing in Crohn's disease: a prospective cohort study.

Koga A, Matsui T, Takatsu N, Takada Y, Kishi M, Yano Y, Beppu T, Ono Y, Ninomiya K, Hirai F, Nagahama T, Hisabe T, Takaki Y, Yao K, Imaeda H, Andoh A.

Intest Res. 2018 Apr;16(2):223-232. doi: 10.5217/ir.2018.16.2.223. Epub 2018 Apr 30.

26.

Characteristics and Prognostic Factors of Bone Metastasis in Patients With Colorectal Cancer.

Kawamura H, Yamaguchi T, Yano Y, Hozumi T, Takaki Y, Matsumoto H, Nakano D, Takahashi K.

Dis Colon Rectum. 2018 Jun;61(6):673-678. doi: 10.1097/DCR.0000000000001071.

PMID:
29722726
27.

d-Lactate electrochemical biosensor prepared by immobilization of thermostable dye-linked d-lactate dehydrogenase from Candidatus Caldiarchaeum subterraneum.

Satomura T, Hayashi J, Sakamoto H, Nunoura T, Takaki Y, Takai K, Takami H, Ohshima T, Sakuraba H, Suye SI.

J Biosci Bioeng. 2018 Oct;126(4):425-430. doi: 10.1016/j.jbiosc.2018.04.002. Epub 2018 Apr 22.

PMID:
29691195
28.

Digital holography and its multidimensional imaging applications: a review.

Tahara T, Quan X, Otani R, Takaki Y, Matoba O.

Microscopy (Oxf). 2018 Apr 1;67(2):55-67. doi: 10.1093/jmicro/dfy007.

29.

Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan.

Yoshida M, Mochizuki T, Urayama SI, Yoshida-Takashima Y, Nishi S, Hirai M, Nomaki H, Takaki Y, Nunoura T, Takai K.

Front Microbiol. 2018 Feb 6;9:75. doi: 10.3389/fmicb.2018.00075. eCollection 2018.

30.

A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile.

Nunoura T, Chikaraishi Y, Izaki R, Suwa T, Sato T, Harada T, Mori K, Kato Y, Miyazaki M, Shimamura S, Yanagawa K, Shuto A, Ohkouchi N, Fujita N, Takaki Y, Atomi H, Takai K.

Science. 2018 Feb 2;359(6375):559-563. doi: 10.1126/science.aao3407. Epub 2018 Feb 1.

PMID:
29420286
31.

Identification of microRNA that represses IRS-1 expression in liver.

Ono K, Igata M, Kondo T, Kitano S, Takaki Y, Hanatani S, Sakaguchi M, Goto R, Senokuchi T, Kawashima J, Furukawa N, Motoshima H, Araki E.

PLoS One. 2018 Jan 24;13(1):e0191553. doi: 10.1371/journal.pone.0191553. eCollection 2018.

32.

Genome-enabled metabolic reconstruction of dominant chemosynthetic colonizers in deep-sea massive sulfide deposits.

Kato S, Shibuya T, Takaki Y, Hirai M, Nunoura T, Suzuki K.

Environ Microbiol. 2018 Feb;20(2):862-877. doi: 10.1111/1462-2920.14032. Epub 2018 Jan 10.

PMID:
29322618
33.

Deepest and hottest hydrothermal activity in the Okinawa Trough: the Yokosuka site at Yaeyama Knoll.

Miyazaki J, Kawagucci S, Makabe A, Takahashi A, Kitada K, Torimoto J, Matsui Y, Tasumi E, Shibuya T, Nakamura K, Horai S, Sato S, Ishibashi JI, Kanzaki H, Nakagawa S, Hirai M, Takaki Y, Okino K, Watanabe HK, Kumagai H, Chen C.

R Soc Open Sci. 2017 Dec 20;4(12):171570. doi: 10.1098/rsos.171570. eCollection 2017 Dec.

34.

Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments.

Hirai M, Nishi S, Tsuda M, Sunamura M, Takaki Y, Nunoura T.

Microbes Environ. 2017 Dec 27;32(4):336-343. doi: 10.1264/jsme2.ME17132. Epub 2017 Nov 28.

35.

A Simple and Efficient RNA Extraction Method from Deep-Sea Hydrothermal Vent Chimney Structures.

Muto H, Takaki Y, Hirai M, Mino S, Sawayama S, Takai K, Nakagawa S.

Microbes Environ. 2017 Dec 27;32(4):330-335. doi: 10.1264/jsme2.ME17048. Epub 2017 Nov 30.

36.

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.

Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R.

Science. 2017 Nov 24;358(6366):1046-1051. doi: 10.1126/science.aan8260.

PMID:
29170234
37.

Asymmetric integral imaging system for a see-through three-dimensional display with background imaging function.

Yamaguchi Y, Takaki Y.

Opt Express. 2017 Aug 21;25(17):20369-20380. doi: 10.1364/OE.25.020369.

PMID:
29041719
38.

Metagenomic insights into zooplankton-associated bacterial communities.

De Corte D, Srivastava A, Koski M, Garcia JAL, Takaki Y, Yokokawa T, Nunoura T, Elisabeth NH, Sintes E, Herndl GJ.

Environ Microbiol. 2018 Feb;20(2):492-505. doi: 10.1111/1462-2920.13944. Epub 2017 Oct 27.

39.

Ancient Occasional Host Switching of Maternally Transmitted Bacterial Symbionts of Chemosynthetic Vesicomyid Clams.

Ozawa G, Shimamura S, Takaki Y, Takishita K, Ikuta T, Barry JP, Maruyama T, Fujikura K, Yoshida T.

Genome Biol Evol. 2017 Sep 1;9(9):2226-2236. doi: 10.1093/gbe/evx166.

40.

Microbiota in the coelomic fluid of two common coastal starfish species and characterization of an abundant Helicobacter-related taxon.

Nakagawa S, Saito H, Tame A, Hirai M, Yamaguchi H, Sunata T, Aida M, Muto H, Sawayama S, Takaki Y.

Sci Rep. 2017 Aug 18;7(1):8764. doi: 10.1038/s41598-017-09355-2.

41.

Multiwavelength digital holography with wavelength-multiplexed holograms and arbitrary symmetric phase shifts.

Tahara T, Otani R, Omae K, Gotohda T, Arai Y, Takaki Y.

Opt Express. 2017 May 15;25(10):11157-11172. doi: 10.1364/OE.25.011157.

PMID:
28788797
42.

Sudden blindness as an initial manifestation of localized fusariosis in ethmoid sinus and optic nerve.

Kurosawa S, Doki N, Sekiya N, Ikuta S, Takaki Y, Ohashi K.

Ann Hematol. 2017 Oct;96(10):1771-1772. doi: 10.1007/s00277-017-3080-0. Epub 2017 Jul 27. No abstract available.

PMID:
28752393
43.

Lebetimonas natsushimae sp. nov., a novel strictly anaerobic, moderately thermophilic chemoautotroph isolated from a deep-sea hydrothermal vent polychaete nest in the Mid-Okinawa Trough.

Nagata R, Takaki Y, Tame A, Nunoura T, Muto H, Mino S, Sawayama S, Takai K, Nakagawa S.

Syst Appl Microbiol. 2017 Sep;40(6):352-356. doi: 10.1016/j.syapm.2017.06.002. Epub 2017 Jul 4.

PMID:
28690052
44.

Genomic Evidence that Methanotrophic Endosymbionts Likely Provide Deep-Sea Bathymodiolus Mussels with a Sterol Intermediate in Cholesterol Biosynthesis.

Takishita K, Takaki Y, Chikaraishi Y, Ikuta T, Ozawa G, Yoshida T, Ohkouchi N, Fujikura K.

Genome Biol Evol. 2017 May 1;9(5):1148-1160. doi: 10.1093/gbe/evx082.

45.

Zinc monotherapy for young children with presymptomatic Wilson disease: A multicenter study in Japan.

Eda K, Mizuochi T, Iwama I, Inui A, Etani Y, Araki M, Hara S, Kumagai H, Hagiwara SI, Murayama K, Murakami J, Shimizu N, Kodama H, Yasuda R, Takaki Y, Yamashita Y.

J Gastroenterol Hepatol. 2018 Jan;33(1):264-269. doi: 10.1111/jgh.13812.

PMID:
28452067
46.

Correction: Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams.

Shimamura S, Kaneko T, Ozawa G, Matsumoto MN, Koshiishi T, Takaki Y, Kato C, Takai K, Yoshida T, Fujikura K, Barry JP, Maruyama T.

PLoS One. 2017 Apr 25;12(4):e0176805. doi: 10.1371/journal.pone.0176805. eCollection 2017.

47.

Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams.

Shimamura S, Kaneko T, Ozawa G, Matsumoto MN, Koshiishi T, Takaki Y, Kato C, Takai K, Yoshida T, Fujikura K, Barry JP, Maruyama T.

PLoS One. 2017 Feb 15;12(2):e0171274. doi: 10.1371/journal.pone.0171274. eCollection 2017. Erratum in: PLoS One. 2017 Apr 25;12 (4):e0176805.

48.

PlantExpress: A Database Integrating OryzaExpress and ArthaExpress for Single-species and Cross-species Gene Expression Network Analyses with Microarray-Based Transcriptome Data.

Kudo T, Terashima S, Takaki Y, Tomita K, Saito M, Kanno M, Yokoyama K, Yano K.

Plant Cell Physiol. 2017 Jan 1;58(1):e1. doi: 10.1093/pcp/pcw208.

PMID:
28158643
49.

Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1.

Takami H, Toyoda A, Uchiyama I, Itoh T, Takaki Y, Arai W, Nishi S, Kawai M, Shin-Ya K, Ikeda H.

DNA Res. 2017 Apr 1;24(2):169-177. doi: 10.1093/dnares/dsw055.

50.

Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species.

Kudo T, Terashima S, Takaki Y, Nakamura Y, Kobayashi M, Yano K.

Methods Mol Biol. 2017;1533:229-240.

PMID:
27987174

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