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An interactive and intuitive visualisation method for X-ray computed tomography data of biological samples in 3D Portable Document Format.

Tesařová M, Heude E, Comai G, Zikmund T, Kaucká M, Adameyko I, Tajbakhsh S, Kaiser J.

Sci Rep. 2019 Oct 17;9(1):14896. doi: 10.1038/s41598-019-51180-2.


Muscle-selective RUNX3 dependence of sensorimotor circuit development.

Wang Y, Wu H, Zelenin P, Fontanet P, Wanderoy S, Petitpré C, Comai G, Bellardita C, Xue-Franzén Y, Huettl RE, Huber AB, Tajbakhsh S, Kiehn O, Ernfors P, Deliagina TG, Lallemend F, Hadjab S.

Development. 2019 Oct 24;146(20). pii: dev181750. doi: 10.1242/dev.181750.


Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells.

Hernando-Herraez I, Evano B, Stubbs T, Commere PH, Jan Bonder M, Clark S, Andrews S, Tajbakhsh S, Reik W.

Nat Commun. 2019 Sep 25;10(1):4361. doi: 10.1038/s41467-019-12293-4.


A distinct cardiopharyngeal mesoderm genetic hierarchy establishes antero-posterior patterning of esophagus striated muscle.

Comai G, Heude E, Mella S, Paisant S, Pala F, Gallardo M, Langa F, Kardon G, Gopalakrishnan S, Tajbakhsh S.

Elife. 2019 Sep 19;8. pii: e47460. doi: 10.7554/eLife.47460.


High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations.

Giordani L, He GJ, Negroni E, Sakai H, Law JYC, Siu MM, Wan R, Corneau A, Tajbakhsh S, Cheung TH, Le Grand F.

Mol Cell. 2019 May 2;74(3):609-621.e6. doi: 10.1016/j.molcel.2019.02.026. Epub 2019 Mar 25.


Combined Notch and PDGF Signaling Enhances Migration and Expression of Stem Cell Markers while Inducing Perivascular Cell Features in Muscle Satellite Cells.

Gerli MFM, Moyle LA, Benedetti S, Ferrari G, Ucuncu E, Ragazzi M, Constantinou C, Louca I, Sakai H, Ala P, De Coppi P, Tajbakhsh S, Cossu G, Tedesco FS.

Stem Cell Reports. 2019 Mar 5;12(3):461-473. doi: 10.1016/j.stemcr.2019.01.007. Epub 2019 Feb 7.


Skeletal muscle stem cells in comfort and stress.

Evano B, Tajbakhsh S.

NPJ Regen Med. 2018 Dec 21;3:24. doi: 10.1038/s41536-018-0062-3. eCollection 2018. Review.


Notchless defines a stage-specific requirement for ribosome biogenesis during lineage progression in adult skeletal myogenesis.

Gayraud-Morel B, Le Bouteiller M, Commere PH, Cohen-Tannoudji M, Tajbakhsh S.

Development. 2018 Nov 26;145(23). pii: dev162636. doi: 10.1242/dev.162636.


Unique morphogenetic signatures define mammalian neck muscles and associated connective tissues.

Heude E, Tesarova M, Sefton EM, Jullian E, Adachi N, Grimaldi A, Zikmund T, Kaiser J, Kardon G, Kelly RG, Tajbakhsh S.

Elife. 2018 Nov 19;7. pii: e40179. doi: 10.7554/eLife.40179.


Notch-Induced miR-708 Antagonizes Satellite Cell Migration and Maintains Quiescence.

Baghdadi MB, Firmino J, Soni K, Evano B, Di Girolamo D, Mourikis P, Castel D, Tajbakhsh S.

Cell Stem Cell. 2018 Dec 6;23(6):859-868.e5. doi: 10.1016/j.stem.2018.09.017. Epub 2018 Nov 8.


RhoA and ERK signalling regulate the expression of the transcription factor Nfix in myogenic cells.

Taglietti V, Angelini G, Mura G, Bonfanti C, Caruso E, Monteverde S, Le Carrou G, Tajbakhsh S, Relaix F, Messina G.

Development. 2018 Oct 29;145(21). pii: dev163956. doi: 10.1242/dev.163956.


Distinct metabolic states govern skeletal muscle stem cell fates during prenatal and postnatal myogenesis.

Pala F, Di Girolamo D, Mella S, Yennek S, Chatre L, Ricchetti M, Tajbakhsh S.

J Cell Sci. 2018 Jul 27;131(14). pii: jcs212977. doi: 10.1242/jcs.212977.


Detection of Acinetobacter spp. in Blood Cultures by an Improved Fluorescent in Situ Hybridization Assay.

Asaadi H, Naeimi B, Gharibi S, Khosravi A, Dobaradaran S, Taherkhani R, Tajbakhsh S.

Pol J Microbiol. 2018 Mar 9;67(1):3-10. doi: 10.5604/01.3001.0011.6137.


Inhibition of the Activin Receptor Type-2B Pathway Restores Regenerative Capacity in Satellite Cell-Depleted Skeletal Muscle.

Formicola L, Pannérec A, Correra RM, Gayraud-Morel B, Ollitrault D, Besson V, Tajbakhsh S, Lachey J, Seehra JS, Marazzi G, Sassoon DA.

Front Physiol. 2018 May 24;9:515. doi: 10.3389/fphys.2018.00515. eCollection 2018.


Correction to: Comparison of multiple transcriptomes exposes unified and divergent features of quiescent and activated skeletal muscle stem cells.

Pietrosemoli N, Mella S, Yennek S, Baghdadi MB, Sakai H, Sambasivan R, Pala F, Di Girolamo D, Tajbakhsh S.

Skelet Muscle. 2018 Jun 6;8(1):19. doi: 10.1186/s13395-018-0165-y.


Reciprocal signalling by Notch-Collagen V-CALCR retains muscle stem cells in their niche.

Baghdadi MB, Castel D, Machado L, Fukada SI, Birk DE, Relaix F, Tajbakhsh S, Mourikis P.

Nature. 2018 May;557(7707):714-718. doi: 10.1038/s41586-018-0144-9. Epub 2018 May 23.


Direct Reprogramming of Mouse Fibroblasts into Functional Skeletal Muscle Progenitors.

Bar-Nur O, Gerli MFM, Di Stefano B, Almada AE, Galvin A, Coffey A, Huebner AJ, Feige P, Verheul C, Cheung P, Payzin-Dogru D, Paisant S, Anselmo A, Sadreyev RI, Ott HC, Tajbakhsh S, Rudnicki MA, Wagers AJ, Hochedlinger K.

Stem Cell Reports. 2018 May 8;10(5):1505-1521. doi: 10.1016/j.stemcr.2018.04.009.


Recapitulating early development of mouse musculoskeletal precursors of the paraxial mesoderm in vitro.

Chal J, Al Tanoury Z, Oginuma M, Moncuquet P, Gobert B, Miyanari A, Tassy O, Guevara G, Hubaud A, Bera A, Sumara O, Garnier JM, Kennedy L, Knockaert M, Gayraud-Morel B, Tajbakhsh S, Pourquié O.

Development. 2018 Mar 19;145(6). pii: dev157339. doi: 10.1242/dev.157339.


Small-RNA sequencing identifies dynamic microRNA deregulation during skeletal muscle lineage progression.

Castel D, Baghdadi MB, Mella S, Gayraud-Morel B, Marty V, Cavaillé J, Antoniewski C, Tajbakhsh S.

Sci Rep. 2018 Mar 9;8(1):4208. doi: 10.1038/s41598-018-21991-w.


Loss of MyoD and Myf5 in Skeletal Muscle Stem Cells Results in Altered Myogenic Programming and Failed Regeneration.

Yamamoto M, Legendre NP, Biswas AA, Lawton A, Yamamoto S, Tajbakhsh S, Kardon G, Goldhamer DJ.

Stem Cell Reports. 2018 Mar 13;10(3):956-969. doi: 10.1016/j.stemcr.2018.01.027. Epub 2018 Mar 1.


Accessibility and delay in random temporal networks.

Tajbakhsh SE, Coon JP, Simmons DE.

Phys Rev E. 2017 Sep;96(3-1):032309. doi: 10.1103/PhysRevE.96.032309. Epub 2017 Sep 12.


Comparison of multiple transcriptomes exposes unified and divergent features of quiescent and activated skeletal muscle stem cells.

Pietrosemoli N, Mella S, Yennek S, Baghdadi MB, Sakai H, Sambasivan R, Pala F, Di Girolamo D, Tajbakhsh S.

Skelet Muscle. 2017 Dec 22;7(1):28. doi: 10.1186/s13395-017-0144-8. Erratum in: Skelet Muscle. 2018 Jun 6;8(1):19.


Regulation and phylogeny of skeletal muscle regeneration.

Baghdadi MB, Tajbakhsh S.

Dev Biol. 2018 Jan 15;433(2):200-209. doi: 10.1016/j.ydbio.2017.07.026. Epub 2017 Aug 12. Review.


Comparison of rapid diagnostic tests to detect Mycobacterium avium subsp. paratuberculosis disseminated infection in bovine liver.

Zarei M, Ghorbanpour M, Tajbakhsh S, Mosavari N.

Trop Anim Health Prod. 2017 Aug;49(6):1195-1200. doi: 10.1007/s11250-017-1317-5. Epub 2017 May 27.


Effect of chemical immobilization of SDF-1α into muscle-derived scaffolds on angiogenesis and muscle progenitor recruitment.

Rajabi S, Jalili-Firoozinezhad S, Ashtiani MK, Le Carrou G, Tajbakhsh S, Baharvand H.

J Tissue Eng Regen Med. 2018 Jan;12(1):e438-e450. doi: 10.1002/term.2479. Epub 2017 Oct 2.


Notch ligands regulate the muscle stem-like state ex vivo but are not sufficient for retaining regenerative capacity.

Sakai H, Fukuda S, Nakamura M, Uezumi A, Noguchi YT, Sato T, Morita M, Yamada H, Tsuchida K, Tajbakhsh S, Fukada SI.

PLoS One. 2017 May 12;12(5):e0177516. doi: 10.1371/journal.pone.0177516. eCollection 2017.


Quiescence of human muscle stem cells is favored by culture on natural biopolymeric films.

Monge C, DiStasio N, Rossi T, Sébastien M, Sakai H, Kalman B, Boudou T, Tajbakhsh S, Marty I, Bigot A, Mouly V, Picart C.

Stem Cell Res Ther. 2017 May 2;8(1):104. doi: 10.1186/s13287-017-0556-8.


Sensitivity to Antibiotics of Bacteria Exposed to Gamma Radiation Emitted from Hot Soils of the High Background Radiation Areas of Ramsar, Northern Iran.

Mortazavi SMJ, Zarei S, Taheri M, Tajbakhsh S, Mortazavi SA, Ranjbar S, Momeni F, Masoomi S, Ansari L, Movahedi MM, Taeb S, Zarei S, Haghani M.

Int J Occup Environ Med. 2017 Apr;8(2):80-84. doi: 10.15171/ijoem.2017.958.


lncRNA-Encoded Polypeptide SPAR(s) with mTORC1 to Regulate Skeletal Muscle Regeneration.

Tajbakhsh S.

Cell Stem Cell. 2017 Apr 6;20(4):428-430. doi: 10.1016/j.stem.2017.03.016.


Epigenetic regulation of muscle development.

Barreiro E, Tajbakhsh S.

J Muscle Res Cell Motil. 2017 Feb;38(1):31-35. doi: 10.1007/s10974-017-9469-5. Epub 2017 Mar 28. Review.


Isolation of Muscle Stem Cells from Mouse Skeletal Muscle.

Gayraud-Morel B, Pala F, Sakai H, Tajbakhsh S.

Methods Mol Biol. 2017;1556:23-39. doi: 10.1007/978-1-4939-6771-1_2.


Cilia-mediated Hedgehog signaling controls form and function in the mammalian larynx.

Tabler JM, Rigney MM, Berman GJ, Gopalakrishnan S, Heude E, Al-Lami HA, Yannakoudakis BZ, Fitch RD, Carter C, Vokes S, Liu KJ, Tajbakhsh S, Egnor SR, Wallingford JB.

Elife. 2017 Feb 13;6. pii: e19153. doi: 10.7554/eLife.19153.


Trends in tissue repair and regeneration.

Galliot B, Crescenzi M, Jacinto A, Tajbakhsh S.

Development. 2017 Feb 1;144(3):357-364. doi: 10.1242/dev.144279. Review.


Retinoic acid maintains human skeletal muscle progenitor cells in an immature state.

El Haddad M, Notarnicola C, Evano B, El Khatib N, Blaquière M, Bonnieu A, Tajbakhsh S, Hugon G, Vernus B, Mercier J, Carnac G.

Cell Mol Life Sci. 2017 May;74(10):1923-1936. doi: 10.1007/s00018-016-2445-1. Epub 2016 Dec 26.


Injury-Induced Senescence Enables In Vivo Reprogramming in Skeletal Muscle.

Chiche A, Le Roux I, von Joest M, Sakai H, Aguín SB, Cazin C, Salam R, Fiette L, Alegria O, Flamant P, Tajbakhsh S, Li H.

Cell Stem Cell. 2017 Mar 2;20(3):407-414.e4. doi: 10.1016/j.stem.2016.11.020. Epub 2016 Dec 22.


A comprehensive study on the fabrication and properties of biocomposites of poly(lactic acid)/ceramics for bone tissue engineering.

Tajbakhsh S, Hajiali F.

Mater Sci Eng C Mater Biol Appl. 2017 Jan 1;70(Pt 1):897-912. doi: 10.1016/j.msec.2016.09.008. Epub 2016 Sep 7. Review.


Prevalence and Trends of Transfusion-Transmissible Viral Infections among Blood Donors in South of Iran: An Eleven-Year Retrospective Study.

Farshadpour F, Taherkhani R, Tajbakhsh S, Gholizadeh Tangestani M, Hajiani G, Sharifi N, Taherkhani S, Nejadbolkheyr A.

PLoS One. 2016 Jun 16;11(6):e0157615. doi: 10.1371/journal.pone.0157615. eCollection 2016.


Nfix Regulates Temporal Progression of Muscle Regeneration through Modulation of Myostatin Expression.

Rossi G, Antonini S, Bonfanti C, Monteverde S, Vezzali C, Tajbakhsh S, Cossu G, Messina G.

Cell Rep. 2016 Mar 8;14(9):2238-2249. doi: 10.1016/j.celrep.2016.02.014. Epub 2016 Feb 25.


Comparative Study of Injury Models for Studying Muscle Regeneration in Mice.

Hardy D, Besnard A, Latil M, Jouvion G, Briand D, Thépenier C, Pascal Q, Guguin A, Gayraud-Morel B, Cavaillon JM, Tajbakhsh S, Rocheteau P, Chrétien F.

PLoS One. 2016 Jan 25;11(1):e0147198. doi: 10.1371/journal.pone.0147198. eCollection 2016.


Numb is required to prevent p53-dependent senescence following skeletal muscle injury.

Le Roux I, Konge J, Le Cam L, Flamant P, Tajbakhsh S.

Nat Commun. 2015 Oct 27;6:8528. doi: 10.1038/ncomms9528.


Cytokine Profiles and Cell Proliferation Responses to Truncated ORF2 Protein in Iranian Patients Recovered from Hepatitis E Infection.

Taherkhani R, Farshadpour F, Makvandi M, Rajabi Memari H, Samarbafzadeh AR, Sharifi N, Naeimi B, Tajbakhsh S, Akbarzadeh S.

J Trop Med. 2015;2015:523560. doi: 10.1155/2015/523560. Epub 2015 Sep 15.


Invitro Antibacterial Activity of the Prosopis Juliflora Seed Pods on Some Common Pathogens.

Tajbakhsh S, Barmak A, Vakhshiteh F, Gharibi M.

J Clin Diagn Res. 2015 Aug;9(8):DC13-5. doi: 10.7860/JCDR/2015/13549.6370. Epub 2015 Aug 1.


A Cranial Mesoderm Origin for Esophagus Striated Muscles.

Gopalakrishnan S, Comai G, Sambasivan R, Francou A, Kelly RG, Tajbakhsh S.

Dev Cell. 2015 Sep 28;34(6):694-704. doi: 10.1016/j.devcel.2015.07.003. Epub 2015 Sep 17.


Differential Telomere Shortening in Blood versus Arteries in an Animal Model of Type 2 Diabetes.

Tajbakhsh S, Aliakbari K, Hussey DJ, Lower KM, Donato AJ, Sokoya EM.

J Diabetes Res. 2015;2015:153829. doi: 10.1155/2015/153829. Epub 2015 Aug 6.


Differentiation of pluripotent stem cells to muscle fiber to model Duchenne muscular dystrophy.

Chal J, Oginuma M, Al Tanoury Z, Gobert B, Sumara O, Hick A, Bousson F, Zidouni Y, Mursch C, Moncuquet P, Tassy O, Vincent S, Miyanari A, Bera A, Garnier JM, Guevara G, Hestin M, Kennedy L, Hayashi S, Drayton B, Cherrier T, Gayraud-Morel B, Gussoni E, Relaix F, Tajbakhsh S, Pourquié O.

Nat Biotechnol. 2015 Sep;33(9):962-9. doi: 10.1038/nbt.3297. Epub 2015 Aug 3.


Isolation and Molecular Detection of Gram Negative Bacteria Causing Urinary Tract Infection in Patients Referred to Shahrekord Hospitals, Iran.

Tajbakhsh E, Tajbakhsh S, Khamesipour F.

Iran Red Crescent Med J. 2015 May 31;17(5):e24779. doi: 10.5812/ircmj.17(5)2015.24779. eCollection 2015 May.


Chromatin signatures at Notch-regulated enhancers reveal large-scale changes in H3K56ac upon activation.

Skalska L, Stojnic R, Li J, Fischer B, Cerda-Moya G, Sakai H, Tajbakhsh S, Russell S, Adryan B, Bray SJ.

EMBO J. 2015 Jul 14;34(14):1889-904. doi: 10.15252/embj.201489923. Epub 2015 Jun 11.


Phylogenetic groups of Escherichia coli strains from patients with urinary tract infection in Iran based on the new Clermont phylotyping method.

Iranpour D, Hassanpour M, Ansari H, Tajbakhsh S, Khamisipour G, Najafi A.

Biomed Res Int. 2015;2015:846219. doi: 10.1155/2015/846219. Epub 2015 Jan 8.


Variations in the efficiency of lineage marking and ablation confound distinctions between myogenic cell populations.

Comai G, Sambasivan R, Gopalakrishnan S, Tajbakhsh S.

Dev Cell. 2014 Dec 8;31(5):654-67. doi: 10.1016/j.devcel.2014.11.005.


Intracellular inactivation of thyroid hormone is a survival mechanism for muscle stem cell proliferation and lineage progression.

Dentice M, Ambrosio R, Damiano V, Sibilio A, Luongo C, Guardiola O, Yennek S, Zordan P, Minchiotti G, Colao A, Marsili A, Brunelli S, Del Vecchio L, Larsen PR, Tajbakhsh S, Salvatore D.

Cell Metab. 2014 Dec 2;20(6):1038-48. doi: 10.1016/j.cmet.2014.10.009. Epub 2014 Nov 13.

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