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Items: 1 to 50 of 70

1.

Species-Specific Marker Discovery in Tilapia.

Syaifudin M, Bekaert M, Taggart JB, Bartie KL, Wehner S, Palaiokostas C, Khan MGQ, Selly SC, Hulata G, D'Cotta H, Baroiller JF, McAndrew BJ, Penman DJ.

Sci Rep. 2019 Sep 10;9(1):13001. doi: 10.1038/s41598-019-48339-2.

2.

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections.

Razgour O, Forester B, Taggart JB, Bekaert M, Juste J, Ibáñez C, Puechmaille SJ, Novella-Fernandez R, Alberdi A, Manel S.

Proc Natl Acad Sci U S A. 2019 May 21;116(21):10418-10423. doi: 10.1073/pnas.1820663116. Epub 2019 May 6.

3.

Genetic diversity and structure in Arapaima gigas populations from Amazon and Araguaia-Tocantins river basins.

Torati LS, Taggart JB, Varela ES, Araripe J, Wehner S, Migaud H.

BMC Genet. 2019 Jan 28;20(1):13. doi: 10.1186/s12863-018-0711-y.

4.

Expanding the miRNA Repertoire in Atlantic Salmon; Discovery of IsomiRs and miRNAs Highly Expressed in Different Tissues and Developmental Stages.

Woldemariam NT, Agafonov O, Høyheim B, Houston RD, Taggart JB, Andreassen R.

Cells. 2019 Jan 11;8(1). pii: E42. doi: 10.3390/cells8010042.

5.

Molecular epidemiological study on Infectious Pancreatic Necrosis Virus isolates from aquafarms in Scotland over three decades.

Ulrich K, Wehner S, Bekaert M, Di Paola N, Dilcher M, Muir KF, Taggart JB, Matejusova I, Weidmann M.

J Gen Virol. 2018 Dec;99(12):1567-1581. doi: 10.1099/jgv.0.001155. Epub 2018 Oct 25.

PMID:
30358526
6.

Parallel evolution and adaptation to environmental factors in a marine flatfish: Implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus).

do Prado FD, Vera M, Hermida M, Bouza C, Pardo BG, Vilas R, Blanco A, Fernández C, Maroso F, Maes GE, Turan C, Volckaert FAM, Taggart JB, Carr A, Ogden R, Nielsen EE; Aquatrace Consortium, Martínez P.

Evol Appl. 2018 Apr 6;11(8):1322-1341. doi: 10.1111/eva.12628. eCollection 2018 Sep.

7.

Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species.

Maroso F, Hillen JEJ, Pardo BG, Gkagkavouzis K, Coscia I, Hermida M, Franch R, Hellemans B, Van Houdt J, Simionati B, Taggart JB, Nielsen EE, Maes G, Ciavaglia SA, Webster LMI, Volckaert FAM, Martinez P, Bargelloni L, Ogden R; AquaTrace Consortium.

Mar Genomics. 2018 Jun;39:64-72. doi: 10.1016/j.margen.2018.02.002. Epub 2018 Feb 27.

PMID:
29496460
8.

Single-nucleotide polymorphism discovery and panel characterization in the African forest elephant.

Bourgeois S, Senn H, Kaden J, Taggart JB, Ogden R, Jeffery KJ, Bunnefeld N, Abernethy K, McEwing R.

Ecol Evol. 2018 Jan 24;8(4):2207-2217. doi: 10.1002/ece3.3854. eCollection 2018 Feb.

9.

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes.

Marburger S, Alexandrou MA, Taggart JB, Creer S, Carvalho G, Oliveira C, Taylor MI.

Proc Biol Sci. 2018 Feb 14;285(1872). pii: 20172732. doi: 10.1098/rspb.2017.2732.

10.

Impact of Salmonid alphavirus infection in diploid and triploid Atlantic salmon (Salmo salar L.) fry.

Herath TK, Ashby AJ, Jayasuriya NS, Bron JE, Taylor JF, Adams A, Richards RH, Weidmann M, Ferguson HW, Taggart JB, Migaud H, Fordyce MJ, Thompson KD.

PLoS One. 2017 Sep 26;12(9):e0179192. doi: 10.1371/journal.pone.0179192. eCollection 2017.

11.

Evolution and conservation of Characidium sex chromosomes.

Utsunomia R, Scacchetti PC, Hermida M, Fernández-Cebrián R, Taboada X, Fernández C, Bekaert M, Mendes NJ, Robledo D, Mank JE, Taggart JB, Oliveira C, Foresti F, Martínez P.

Heredity (Edinb). 2017 Oct;119(4):237-244. doi: 10.1038/hdy.2017.43. Epub 2017 Jul 26.

12.

An integrated framework to identify wildlife populations under threat from climate change.

Razgour O, Taggart JB, Manel S, Juste J, Ibáñez C, Rebelo H, Alberdi A, Jones G, Park K.

Mol Ecol Resour. 2018 Jan;18(1):18-31. doi: 10.1111/1755-0998.12694. Epub 2017 Jul 25.

PMID:
28649779
13.

Gene-centromere mapping in meiotic gynogenetic European seabass.

Oral M, Colléter J, Bekaert M, Taggart JB, Palaiokostas C, McAndrew BJ, Vandeputte M, Chatain B, Kuhl H, Reinhardt R, Peruzzi S, Penman DJ.

BMC Genomics. 2017 Jun 7;18(1):449. doi: 10.1186/s12864-017-3826-z.

14.

Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon.

Tsai HY, Matika O, Edwards SM, Antolín-Sánchez R, Hamilton A, Guy DR, Tinch AE, Gharbi K, Stear MJ, Taggart JB, Bron JE, Hickey JM, Houston RD.

G3 (Bethesda). 2017 Apr 3;7(4):1377-1383. doi: 10.1534/g3.117.040717.

15.

Differential Survival among Batches of Atlantic Cod (Gadus morhua L.) from Fertilisation through to Post-Metamorphosis.

Petersen PE, Penman DJ, Dahle G, Patursson Ø, Taggart JB.

PLoS One. 2016 Jun 30;11(6):e0158091. doi: 10.1371/journal.pone.0158091. eCollection 2016.

16.

Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations.

Tsai HY, Hamilton A, Tinch AE, Guy DR, Bron JE, Taggart JB, Gharbi K, Stear M, Matika O, Pong-Wong R, Bishop SC, Houston RD.

Genet Sel Evol. 2016 Jun 29;48(1):47. doi: 10.1186/s12711-016-0226-9.

17.

Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing.

Brown JK, Taggart JB, Bekaert M, Wehner S, Palaiokostas C, Setiawan AN, Symonds JE, Penman DJ.

BMC Genomics. 2016 Jun 10;17:448. doi: 10.1186/s12864-016-2773-4.

18.

Construction and Annotation of a High Density SNP Linkage Map of the Atlantic Salmon (Salmo salar) Genome.

Tsai HY, Robledo D, Lowe NR, Bekaert M, Taggart JB, Bron JE, Houston RD.

G3 (Bethesda). 2016 Jul 7;6(7):2173-9. doi: 10.1534/g3.116.029009.

19.

Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response.

Robledo D, Taggart JB, Ireland JH, McAndrew BJ, Starkey WG, Haley CS, Hamilton A, Guy DR, Mota-Velasco JC, Gheyas AA, Tinch AE, Verner-Jeffreys DW, Paley RK, Rimmer GS, Tew IJ, Bishop SC, Bron JE, Houston RD.

BMC Genomics. 2016 Apr 11;17:279. doi: 10.1186/s12864-016-2600-y.

20.
21.

Exploring a Nonmodel Teleost Genome Through RAD Sequencing-Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis.

Manousaki T, Tsakogiannis A, Taggart JB, Palaiokostas C, Tsaparis D, Lagnel J, Chatziplis D, Magoulas A, Papandroulakis N, Mylonas CC, Tsigenopoulos CS.

G3 (Bethesda). 2015 Dec 29;6(3):509-19. doi: 10.1534/g3.115.023432.

22.

Development and validation of a mixed-tissue oligonucleotide DNA microarray for Atlantic bluefin tuna, Thunnus thynnus (Linnaeus, 1758).

Trumbić Ž, Bekaert M, Taggart JB, Bron JE, Gharbi K, Mladineo I.

BMC Genomics. 2015 Nov 25;16:1007. doi: 10.1186/s12864-015-2208-7.

23.

The effects of feeding β-glucan to Pangasianodon hypophthalmus on immune gene expression and resistance to Edwardsiella ictaluri.

Sirimanapong W, Thompson KD, Ooi EL, Bekaert M, Collet B, Taggart JB, Bron JE, Green DM, Shinn AP, Adams A, Leaver MJ.

Fish Shellfish Immunol. 2015 Nov;47(1):595-605. doi: 10.1016/j.fsi.2015.09.042. Epub 2015 Oct 9.

PMID:
26439415
24.

A Survey of the ATP-Binding Cassette (ABC) Gene Superfamily in the Salmon Louse (Lepeophtheirus salmonis).

Carmona-Antoñanzas G, Carmichael SN, Heumann J, Taggart JB, Gharbi K, Bron JE, Bekaert M, Sturm A.

PLoS One. 2015 Sep 29;10(9):e0137394. doi: 10.1371/journal.pone.0137394. eCollection 2015.

25.

A comparative analysis of the response of the hepatic transcriptome to dietary docosahexaenoic acid in Atlantic salmon (Salmo salar) post-smolts.

Glencross BD, De Santis C, Bicskei B, Taggart JB, Bron JE, Betancor MB, Tocher DR.

BMC Genomics. 2015 Sep 7;16:684. doi: 10.1186/s12864-015-1810-z.

26.

A new SNP-based vision of the genetics of sex determination in European sea bass (Dicentrarchus labrax).

Palaiokostas C, Bekaert M, Taggart JB, Gharbi K, McAndrew BJ, Chatain B, Penman DJ, Vandeputte M.

Genet Sel Evol. 2015 Sep 4;47:68. doi: 10.1186/s12711-015-0148-y.

27.

Nutrigenomic profiling of transcriptional processes affected in liver and distal intestine in response to a soybean meal-induced nutritional stress in Atlantic salmon (Salmo salar).

De Santis C, Bartie KL, Olsen RE, Taggart JB, Tocher DR.

Comp Biochem Physiol Part D Genomics Proteomics. 2015 Sep;15:1-11. doi: 10.1016/j.cbd.2015.04.001. Epub 2015 Apr 18.

PMID:
25916579
28.

A novel sex-determining QTL in Nile tilapia (Oreochromis niloticus).

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

BMC Genomics. 2015 Mar 11;16:171. doi: 10.1186/s12864-015-1383-x.

29.
30.

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.

31.

The antidepressant drug carbamazepine induces differential transcriptome expression in the brain of Atlantic salmon, Salmo salar.

Hampel M, Bron JE, Taggart JB, Leaver MJ.

Aquat Toxicol. 2014 Jun;151:114-23. doi: 10.1016/j.aquatox.2013.12.018. Epub 2013 Dec 24.

PMID:
24439755
32.

Identification of a sex-linked SNP marker in the salmon louse (Lepeophtheirus salmonis) using RAD sequencing.

Carmichael SN, Bekaert M, Taggart JB, Christie HR, Bassett DI, Bron JE, Skuce PJ, Gharbi K, Skern-Mauritzen R, Sturm A.

PLoS One. 2013 Oct 16;8(10):e77832. doi: 10.1371/journal.pone.0077832. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/9a5a8f89-38b6-4ba3-aceb-65aa256f6157.

33.

Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing.

Palaiokostas C, Bekaert M, Davie A, Cowan ME, Oral M, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ, Migaud H.

BMC Genomics. 2013 Aug 20;14:566. doi: 10.1186/1471-2164-14-566.

34.

Sequencing and characterisation of an extensive Atlantic salmon (Salmo salar L.) microRNA repertoire.

Bekaert M, Lowe NR, Bishop SC, Bron JE, Taggart JB, Houston RD.

PLoS One. 2013 Jul 29;8(7):e70136. doi: 10.1371/journal.pone.0070136. Print 2013.

35.

Mapping and validation of the major sex-determining region in Nile tilapia (Oreochromis niloticus L.) Using RAD sequencing.

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

PLoS One. 2013 Jul 11;8(7):e68389. doi: 10.1371/journal.pone.0068389. Print 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/6320d31e-a818-445a-9c44-77a2ba5fe8e0.

36.

Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression.

Carmichael SN, Bron JE, Taggart JB, Ireland JH, Bekaert M, Burgess ST, Skuce PJ, Nisbet AJ, Gharbi K, Sturm A.

BMC Genomics. 2013 Jun 18;14:408. doi: 10.1186/1471-2164-14-408.

37.

An evolutionary perspective on Elovl5 fatty acid elongase: comparison of Northern pike and duplicated paralogs from Atlantic salmon.

Carmona-Antoñanzas G, Tocher DR, Taggart JB, Leaver MJ.

BMC Evol Biol. 2013 Apr 19;13:85. doi: 10.1186/1471-2148-13-85.

38.

The impact of escaped farmed Atlantic salmon (Salmo salar L.) on catch statistics in Scotland.

Green DM, Penman DJ, Migaud H, Bron JE, Taggart JB, McAndrew BJ.

PLoS One. 2012;7(9):e43560. doi: 10.1371/journal.pone.0043560. Epub 2012 Sep 6.

39.

Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar).

Morais S, Silva T, Cordeiro O, Rodrigues P, Guy DR, Bron JE, Taggart JB, Bell JG, Tocher DR.

BMC Genomics. 2012 Sep 4;13:448.

40.

Hepatic transcriptome analysis of inter-family variability in flesh n-3 long-chain polyunsaturated fatty acid content in Atlantic salmon.

Morais S, Taggart JB, Guy DR, Bell JG, Tocher DR.

BMC Genomics. 2012 Aug 20;13:410. doi: 10.1186/1471-2164-13-410.

41.

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.

Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, Guy DR, Tinch AE, Thomson ML, Blaxter ML, Gharbi K, Bron JE, Taggart JB.

BMC Genomics. 2012 Jun 15;13:244. doi: 10.1186/1471-2164-13-244.

42.

Transcriptomic analysis of the host response to early stage salmonid alphavirus (SAV-1) infection in Atlantic salmon Salmo salar L.

Herath TK, Bron JE, Thompson KD, Taggart JB, Adams A, Ireland JH, Richards RH.

Fish Shellfish Immunol. 2012 May;32(5):796-807. doi: 10.1016/j.fsi.2012.02.001. Epub 2012 Feb 15.

PMID:
22365992
43.

Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach.

Williams TD, Turan N, Diab AM, Wu H, Mackenzie C, Bartie KL, Hrydziuszko O, Lyons BP, Stentiford GD, Herbert JM, Abraham JK, Katsiadaki I, Leaver MJ, Taggart JB, George SG, Viant MR, Chipman KJ, Falciani F.

PLoS Comput Biol. 2011 Aug;7(8):e1002126. doi: 10.1371/journal.pcbi.1002126. Epub 2011 Aug 25.

44.

Multiple tissue transcriptomic responses to Piscirickettsia salmonis in Atlantic salmon (Salmo salar).

Tacchi L, Bron JE, Taggart JB, Secombes CJ, Bickerdike R, Adler MA, Takle H, Martin SA.

Physiol Genomics. 2011 Nov 7;43(21):1241-54. doi: 10.1152/physiolgenomics.00086.2011. Epub 2011 Aug 30.

PMID:
21878610
45.

Diet × genotype interactions in hepatic cholesterol and lipoprotein metabolism in Atlantic salmon (Salmo salar) in response to replacement of dietary fish oil with vegetable oil.

Morais S, Pratoomyot J, Torstensen BE, Taggart JB, Guy DR, Bell JG, Tocher DR.

Br J Nutr. 2011 Nov;106(10):1457-69. doi: 10.1017/S0007114511001954. Epub 2011 Jun 3.

PMID:
21736795
46.

Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis.

Morais S, Pratoomyot J, Taggart JB, Bron JE, Guy DR, Bell JG, Tocher DR.

BMC Genomics. 2011 May 20;12:255. doi: 10.1186/1471-2164-12-255.

47.

Copper induces Cu-ATPase ATP7A mRNA in a fish cell line, SAF1.

Minghetti M, Leaver MJ, Taggart JB, Casadei E, Auslander M, Tom M, George SG.

Comp Biochem Physiol C Toxicol Pharmacol. 2011 Aug;154(2):93-9. doi: 10.1016/j.cbpc.2011.03.010. Epub 2011 Apr 4.

PMID:
21473932
48.

Forensic identification of severely degraded Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) tissues.

Dalvin S, Glover KA, Sørvik AG, Seliussen BB, Taggart JB.

Investig Genet. 2010 Nov 3;1(1):12. doi: 10.1186/2041-2223-1-12.

49.

Heritability and mechanisms of n-3 long chain polyunsaturated fatty acid deposition in the flesh of Atlantic salmon.

Leaver MJ, Taggart JB, Villeneuve L, Bron JE, Guy DR, Bishop SC, Houston RD, Matika O, Tocher DR.

Comp Biochem Physiol Part D Genomics Proteomics. 2011 Mar;6(1):62-9. doi: 10.1016/j.cbd.2010.04.002. Epub 2010 Apr 14.

PMID:
20451480
50.

Multiple genes for functional 6 fatty acyl desaturases (Fad) in Atlantic salmon (Salmo salar L.): gene and cDNA characterization, functional expression, tissue distribution and nutritional regulation.

Monroig O, Zheng X, Morais S, Leaver MJ, Taggart JB, Tocher DR.

Biochim Biophys Acta. 2010 Sep;1801(9):1072-81. doi: 10.1016/j.bbalip.2010.04.007. Epub 2010 Apr 18.

PMID:
20403458

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