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Items: 18

1.

Exosomal RNA-profiling of pleural effusions identifies adenocarcinoma patients through elevated miR-200 and LCN2 expression.

Hydbring P, De Petris L, Zhang Y, Brandén E, Koyi H, Novak M, Kanter L, Hååg P, Hurley J, Tadigotla V, Zhu B, Skog J, Viktorsson K, Ekman S, Lewensohn R.

Lung Cancer. 2018 Oct;124:45-52. doi: 10.1016/j.lungcan.2018.07.018. Epub 2018 Jul 27.

PMID:
30268479
2.

Exosome-Based Detection of EGFR T790M in Plasma from Non-Small Cell Lung Cancer Patients.

Castellanos-Rizaldos E, Grimm DG, Tadigotla V, Hurley J, Healy J, Neal PL, Sher M, Venkatesan R, Karlovich C, Raponi M, Krug A, Noerholm M, Tannous J, Tannous BA, Raez LE, Skog JK.

Clin Cancer Res. 2018 Jun 15;24(12):2944-2950. doi: 10.1158/1078-0432.CCR-17-3369. Epub 2018 Mar 13.

PMID:
29535126
3.

Inflammatory gene expression signatures in idiopathic intracranial hypertension: possible implications in microgravity-induced ICP elevation.

Zanello SB, Tadigotla V, Hurley J, Skog J, Stevens B, Calvillo E, Bershad E.

NPJ Microgravity. 2018 Jan 11;4:1. doi: 10.1038/s41526-017-0036-6. eCollection 2018.

4.

Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs.

Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J.

PLoS Genet. 2016 Mar 4;12(3):e1005851. doi: 10.1371/journal.pgen.1005851. eCollection 2016 Mar.

5.

Peanut oral immunotherapy transiently expands circulating Ara h 2-specific B cells with a homologous repertoire in unrelated subjects.

Patil SU, Ogunniyi AO, Calatroni A, Tadigotla VR, Ruiter B, Ma A, Moon J, Love JC, Shreffler WG.

J Allergy Clin Immunol. 2015 Jul;136(1):125-134.e12. doi: 10.1016/j.jaci.2015.03.026. Epub 2015 May 16.

6.

Cannabis microbiome sequencing reveals several mycotoxic fungi native to dispensary grade Cannabis flowers.

McKernan K, Spangler J, Zhang L, Tadigotla V, Helbert Y, Foss T, Smith D.

Version 2. F1000Res. 2015 Dec 10 [revised 2016 Jan 1];4:1422. doi: 10.12688/f1000research.7507.2. eCollection 2015.

7.

Expanded genetic codes in next generation sequencing enable decontamination and mitochondrial enrichment.

McKernan KJ, Spangler J, Zhang L, Tadigotla V, McLaughlin S, Warner J, Zare A, Boles RG.

PLoS One. 2014 May 2;9(5):e96492. doi: 10.1371/journal.pone.0096492. eCollection 2014.

8.

Genome sequencing highlights the dynamic early history of dogs.

Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Wilton A, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Ostrander EA, Marques-Bonet T, Wayne RK, Novembre J.

PLoS Genet. 2014 Jan;10(1):e1004016. doi: 10.1371/journal.pgen.1004016. Epub 2014 Jan 16. Erratum in: PLoS Genet. 2014 Aug;10(8):e1004631. Wilton, Alan [added].

9.

DREAMing of a patent-free human genome for clinical sequencing.

McKernan KJ, Spangler J, Helbert Y, Zhang L, Tadigotla V.

Nat Biotechnol. 2013 Oct;31(10):884-7. doi: 10.1038/nbt.2703. No abstract available.

PMID:
24104751
10.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers.

Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V, McPherson A, Shumansky K, Crisan A, Giuliany R, Heravi-Moussavi A, Rosner J, Lai D, Birol I, Varhol R, Tam A, Dhalla N, Zeng T, Ma K, Chan SK, Griffith M, Moradian A, Cheng SW, Morin GB, Watson P, Gelmon K, Chia S, Chin SF, Curtis C, Rueda OM, Pharoah PD, Damaraju S, Mackey J, Hoon K, Harkins T, Tadigotla V, Sigaroudinia M, Gascard P, Tlsty T, Costello JF, Meyer IM, Eaves CJ, Wasserman WW, Jones S, Huntsman D, Hirst M, Caldas C, Marra MA, Aparicio S.

Nature. 2012 Apr 4;486(7403):395-9. doi: 10.1038/nature10933.

11.

Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence.

Bochkareva A, Yuzenkova Y, Tadigotla VR, Zenkin N.

EMBO J. 2012 Feb 1;31(3):630-9. doi: 10.1038/emboj.2011.432. Epub 2011 Nov 29.

12.

A new basal promoter element recognized by RNA polymerase core enzyme.

Yuzenkova Y, Tadigotla VR, Severinov K, Zenkin N.

EMBO J. 2011 Jul 26;30(18):3766-75. doi: 10.1038/emboj.2011.252.

13.

A unified model of transcription elongation: what have we learned from single-molecule experiments?

Ó Maoiléidigh D, Tadigotla VR, Nudler E, Ruckenstein AE.

Biophys J. 2011 Mar 2;100(5):1157-66. doi: 10.1016/j.bpj.2010.12.3734.

14.

Regulated antisense transcription controls expression of cell-type-specific genes in yeast.

Gelfand B, Mead J, Bruning A, Apostolopoulos N, Tadigotla V, Nagaraj V, Sengupta AM, Vershon AK.

Mol Cell Biol. 2011 Apr;31(8):1701-9. doi: 10.1128/MCB.01071-10. Epub 2011 Feb 7.

15.

Stepwise mechanism for transcription fidelity.

Yuzenkova Y, Bochkareva A, Tadigotla VR, Roghanian M, Zorov S, Severinov K, Zenkin N.

BMC Biol. 2010 May 7;8:54. doi: 10.1186/1741-7007-8-54.

16.

Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli.

Cardinale CJ, Washburn RS, Tadigotla VR, Brown LM, Gottesman ME, Nudler E.

Science. 2008 May 16;320(5878):935-8. doi: 10.1126/science.1152763.

17.

Analysis of Escherichia coli global gene expression profiles in response to overexpression and deletion of CspC and CspE.

Phadtare S, Tadigotla V, Shin WH, Sengupta A, Severinov K.

J Bacteriol. 2006 Apr;188(7):2521-7.

18.

Thermodynamic and kinetic modeling of transcriptional pausing.

Tadigotla VR, O Maoiléidigh D, Sengupta AM, Epshtein V, Ebright RH, Nudler E, Ruckenstein AE.

Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4439-44. Epub 2006 Mar 13. Erratum in: Proc Natl Acad Sci U S A. 2006 May 2;103(18):7198.

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