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Items: 1 to 50 of 86

1.

Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing.

Moriguchi N, Uchiyama K, Miyagi R, Moritsuka E, Takahashi A, Tamura K, Tsumura Y, Teshima KM, Tachida H, Kusumi J.

Heredity (Edinb). 2019 Sep;123(3):371-383. doi: 10.1038/s41437-019-0198-y. Epub 2019 Feb 26.

PMID:
30809077
2.

Effects of cyclic changes in population size on neutral genetic diversity.

Nakamura H, Teshima K, Tachida H.

Ecol Evol. 2018 Aug 25;8(18):9362-9371. doi: 10.1002/ece3.4436. eCollection 2018 Sep.

3.

Horizontal Transmission of Symbiotic Green Algae Between Hydra Strains.

Miyokawa R, Tsuda T, Kanaya HJ, Kusumi J, Tachida H, Kobayakawa Y.

Biol Bull. 2018 Oct;235(2):113-122. doi: 10.1086/699705. Epub 2018 Sep 21.

PMID:
30358444
4.

Understanding and monitoring the consequences of human impacts on intraspecific variation.

Mimura M, Yahara T, Faith DP, Vázquez-Domínguez E, Colautti RI, Araki H, Javadi F, Núñez-Farfán J, Mori AS, Zhou S, Hollingsworth PM, Neaves LE, Fukano Y, Smith GF, Sato YI, Tachida H, Hendry AP.

Evol Appl. 2016 Nov 22;10(2):121-139. doi: 10.1111/eva.12436. eCollection 2017 Feb. Review.

5.

Inferences of population structure and demographic history for Taxodium distichum, a coniferous tree in North America, based on amplicon sequencing analysis.

Ikezaki Y, Suyama Y, Middleton BA, Tsumura Y, Teshima K, Tachida H, Kusumi J.

Am J Bot. 2016 Nov;103(11):1937-1949. Epub 2016 Nov 14.

6.
7.

Difference in flowering time can initiate speciation of nocturnally flowering species.

Matsumoto T, Yasumoto AA, Nitta K, Hirota SK, Yahara T, Tachida H.

J Theor Biol. 2015 Apr 7;370:61-71. doi: 10.1016/j.jtbi.2015.01.036. Epub 2015 Feb 7.

PMID:
25665720
8.

High prevalence of non-synonymous substitutions in mtDNA of cichlid fishes from Lake Victoria.

Shirai K, Inomata N, Mizoiri S, Aibara M, Terai Y, Okada N, Tachida H.

Gene. 2014 Dec 1;552(2):239-45. doi: 10.1016/j.gene.2014.09.039. Epub 2014 Sep 18.

PMID:
25241383
9.

Genetic structure of pelagic and littoral cichlid fishes from Lake Victoria.

Takeda M, Kusumi J, Mizoiri S, Aibara M, Mzighani SI, Sato T, Terai Y, Okada N, Tachida H.

PLoS One. 2013 Sep 6;8(9):e74088. doi: 10.1371/journal.pone.0074088. eCollection 2013.

10.

Symbiosis between hydra and chlorella: molecular phylogenetic analysis and experimental study provide insight into its origin and evolution.

Kawaida H, Ohba K, Koutake Y, Shimizu H, Tachida H, Kobayakawa Y.

Mol Phylogenet Evol. 2013 Mar;66(3):906-14. doi: 10.1016/j.ympev.2012.11.018. Epub 2012 Dec 4.

PMID:
23219706
11.

Difference in flowering time as an isolating barrier.

Matsumoto T, Yasumoto AA, Nitta K, Yahara T, Tachida H.

J Theor Biol. 2013 Jan 21;317:161-7. doi: 10.1016/j.jtbi.2012.10.001. Epub 2012 Oct 11.

PMID:
23063781
12.

Speciation history of three closely related oak gall wasps, Andricus mukaigawae, A. kashiwaphilus, and A. pseudoflos (Hymenoptera: Cynipidae) inferred from nuclear and mitochondrial DNA sequences.

Wachi N, Abe Y, Inomata N, Szmidt AE, Tachida H.

Mol Ecol. 2012 Oct;21(19):4681-94. doi: 10.1111/j.1365-294X.2012.05727.x. Epub 2012 Aug 14.

PMID:
22891783
13.
14.

Correlation between nuptial colors and visual sensitivities tuned by opsins leads to species richness in sympatric Lake Victoria cichlid fishes.

Miyagi R, Terai Y, Aibara M, Sugawara T, Imai H, Tachida H, Mzighani SI, Okitsu T, Wada A, Okada N.

Mol Biol Evol. 2012 Nov;29(11):3281-96. doi: 10.1093/molbev/mss139. Epub 2012 May 21.

PMID:
22617953
15.

Extended linkage disequilibrium in noncoding regions in a conifer, Cryptomeria japonica.

Moritsuka E, Hisataka Y, Tamura M, Uchiyama K, Watanabe A, Tsumura Y, Tachida H.

Genetics. 2012 Mar;190(3):1145-8. doi: 10.1534/genetics.111.136697. Epub 2011 Dec 29.

16.

Multilocus patterns of nucleotide polymorphism and demographic change in Taxodium distichum (Cupressaceae) in the lower Mississippi River alluvial valley.

Kusumi J, Zidong L, Kado T, Tsumura Y, Middleton BA, Tachida H.

Am J Bot. 2010 Nov;97(11):1848-57. doi: 10.3732/ajb.1000082. Epub 2010 Oct 5.

17.

Evolution of the number of LRRs in plant disease resistance genes.

Tamura M, Tachida H.

Mol Genet Genomics. 2011 May;285(5):393-402. doi: 10.1007/s00438-011-0615-2. Epub 2011 Mar 26.

PMID:
21442326
18.

Molecular phylogenetic study in genus Hydra.

Kawaida H, Shimizu H, Fujisawa T, Tachida H, Kobayakawa Y.

Gene. 2010 Nov 15;468(1-2):30-40. doi: 10.1016/j.gene.2010.08.002. Epub 2010 Aug 11.

PMID:
20708072
19.

Genetic structure and putative selective sweep in the pioneer tree, Zanthoxylum ailanthoides.

Yoshida T, Nagai H, Yahara T, Tachida H.

J Plant Res. 2010 Jul;123(4):607-16. doi: 10.1007/s10265-009-0287-8. Epub 2009 Dec 25.

PMID:
20035437
20.

Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA.

Mzighani SI, Nikaido M, Takeda M, Seehausen O, Budeba YL, Ngatunga BP, Katunzi EF, Aibara M, Mizoiri S, Sato T, Tachida H, Okada N.

Gene. 2010 Jan 15;450(1-2):39-47. doi: 10.1016/j.gene.2009.10.002.

PMID:
19837145
21.

Development and characterization of microsatellite markers in Zanthoxylum ailanthoides (Rutaceae).

Nagai H, Yoshida T, Kamiya K, Yahara T, Tachida H.

Mol Ecol Resour. 2009 Mar;9(2):667-9. doi: 10.1111/j.1755-0998.2008.02507.x. Epub 2009 Jan 31.

PMID:
21564723
22.

Sequence analysis of human TRPV6 suggests positive selection outside Africa.

Soejima M, Tachida H, Koda Y.

Biochem Genet. 2009 Feb;47(1-2):147-53. doi: 10.1007/s10528-009-9222-x. Epub 2009 Jan 25. No abstract available.

PMID:
19169858
23.

Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma.

Maeda K, Takeda M, Kamiya K, Aibara M, Mzighani SI, Nishida M, Mizoiri S, Sato T, Terai Y, Okada N, Tachida H.

Gene. 2009 Jul 15;441(1-2):67-73. doi: 10.1016/j.gene.2008.11.008. Epub 2008 Nov 21.

PMID:
19084056
24.

Speciation through sensory drive in cichlid fish.

Seehausen O, Terai Y, Magalhaes IS, Carleton KL, Mrosso HD, Miyagi R, van der Sluijs I, Schneider MV, Maan ME, Tachida H, Imai H, Okada N.

Nature. 2008 Oct 2;455(7213):620-6. doi: 10.1038/nature07285.

PMID:
18833272
25.

Adaptive and slightly deleterious evolution in a conifer, Cryptomeria japonica.

Fujimoto A, Kado T, Yoshimaru H, Tsumura Y, Tachida H.

J Mol Evol. 2008 Aug;67(2):201-10. doi: 10.1007/s00239-008-9140-2. Epub 2008 Jul 16.

PMID:
18629428
26.

High population differentiation and unusual haplotype structure in a shade-intolerant pioneer tree species, Zanthoxylum ailanthoides (Rutaceae) revealed by analysis of DNA polymorphism at four nuclear loci.

Kamiya K, Moritsuka E, Yoshida T, Yahara T, Tachida H.

Mol Ecol. 2008 May;17(10):2329-38. doi: 10.1111/j.1365-294X.2008.03756.x. Epub 2008 Apr 21.

PMID:
18429965
27.

PERMANENT GENETIC RESOURCES: Isolation and characterization of microsatellite loci in the cichlid fish in Lake Victoria, Haplochromis chilotes.

Maeda K, Takeshima H, Mizoiri S, Okada N, Nishida M, Tachida H.

Mol Ecol Resour. 2008 Mar;8(2):428-30. doi: 10.1111/j.1471-8286.2007.01981.x.

PMID:
21585811
28.

Divergent selection on opsins drives incipient speciation in Lake Victoria cichlids.

Terai Y, Seehausen O, Sasaki T, Takahashi K, Mizoiri S, Sugawara T, Sato T, Watanabe M, Konijnendijk N, Mrosso HD, Tachida H, Imai H, Shichida Y, Okada N.

PLoS Biol. 2006 Dec;4(12):e433.

29.
31.

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Relaxation of functional constraint on light-independent protochlorophyllide oxidoreductase in Thuja.

Kusumi J, Sato A, Tachida H; SMBE Tri-National Young Investigators.

Mol Biol Evol. 2006 May;23(5):941-8. Epub 2006 Jan 20.

PMID:
16428257
32.

Evidence for recent positive selection at the human AIM1 locus in a European population.

Soejima M, Tachida H, Ishida T, Sano A, Koda Y.

Mol Biol Evol. 2006 Jan;23(1):179-88. Epub 2005 Sep 14.

PMID:
16162863
33.

Compositional properties of green-plant plastid genomes.

Kusumi J, Tachida H.

J Mol Evol. 2005 Apr;60(4):417-25.

PMID:
15883877
34.

Phylogeny of PgiC gene in Shorea and its closely related genera (Dipterocarpaceae), the dominant trees in Southeast Asian tropical rain forests.

Kamiya K, Harada K, Tachida H, Ashton PS.

Am J Bot. 2005 May;92(5):775-88. doi: 10.3732/ajb.92.5.775.

35.

Nucleotide sequence analyses of human complement 6 (C6) gene suggest balancing selection.

Soejima M, Tachida H, Tsuneoka M, Takenaka O, Kimura H, Koda Y.

Ann Hum Genet. 2005 May;69(Pt 3):239-52.

36.

Gene genealogy and properties of test statistics of neutrality under population growth.

Sano A, Tachida H.

Genetics. 2005 Mar;169(3):1687-97. Epub 2004 Nov 15.

37.

Population differences in DNA sequence variation and linkage disequilibrium at the PON1 gene.

Koda Y, Tachida H, Soejima M, Takenaka O, Kimura H.

Ann Hum Genet. 2004 Mar;68(Pt 2):110-9.

38.

DNA sequence variation of the human ABO-secretor locus ( FUT2) in New Guinean populations: possible early human migration from Africa.

Koda Y, Ishida T, Tachida H, Wang B, Pang H, Soejima M, Soemantri A, Kimura H.

Hum Genet. 2003 Nov;113(6):534-41. Epub 2003 Sep 3.

PMID:
14569463
39.

DNA variation in a conifer, Cryptomeria japonica (Cupressaceae sensu lato).

Kado T, Yoshimaru H, Tsumura Y, Tachida H.

Genetics. 2003 Aug;164(4):1547-59.

40.

A neutral model with fluctuating population size and its effective size.

Iizuka M, Tachida H, Matsuda H.

Genetics. 2002 May;161(1):381-8.

41.

Molecular evolution of nuclear genes in Cupressacea, a group of conifer trees.

Kusumi J, Tsumura Y, Yoshimaru H, Tachida H.

Mol Biol Evol. 2002 May;19(5):736-47.

PMID:
11961107
42.

Contrasting patterns of polymorphisms at the ABO-secretor gene (FUT2) and plasma alpha(1,3)fucosyltransferase gene (FUT6) in human populations.

Koda Y, Tachida H, Pang H, Liu Y, Soejima M, Ghaderi AA, Takenaka O, Kimura H.

Genetics. 2001 Jun;158(2):747-56.

43.

DNA evolution under weak selection.

Tachida H.

Gene. 2000 Dec 30;261(1):3-9.

PMID:
11164031
44.

Ancient origin of the null allele se(428) of the human ABO-secretor locus (FUT2).

Koda Y, Tachida H, Soejima M, Takenaka O, Kimura H.

J Mol Evol. 2000 Mar;50(3):243-8.

PMID:
10754067
46.

Evidence for recent invasion of the medaka fish genome by the Tol2 transposable element.

Koga A, Shimada A, Shima A, Sakaizumi M, Tachida H, Hori H.

Genetics. 2000 May;155(1):273-81.

47.

Molecular evolution in a multisite nearly neutral mutation model.

Tachida H.

J Mol Evol. 2000 Jan;50(1):69-81.

PMID:
10654261
48.

Molecular phylogeny of Dipetrocarpaceae in Southeast Asia based on nucleotide sequences of matK, trnL intron, and trnL-trnF intergenic spacer region in chloroplast DNA.

Kajita T, Kamiya K, Nakamura K, Tachida H, Wickneswari R, Tsumura Y, Yoshimaru H, Yamazaki T.

Mol Phylogenet Evol. 1998 Oct;10(2):202-9.

PMID:
9878231
49.

Evolution of multigene families by gene duplication. A haploid model.

Tachida H, Kuboyama T.

Genetics. 1998 Aug;149(4):2147-58.

50.

Molecular evolution of the amy multigenes in the subgenus Sophophora of Drosophila.

Inomata N, Tachida H, Yamazaki T.

Mol Biol Evol. 1997 Dec;14(12):1338. No abstract available.

PMID:
9402744

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