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Items: 28

1.

Reverse transduction can improve efficiency of AAV vectors in transduction-resistant cells.

Lee EJ, Robinson TM, Tabor JJ, Mikos AG, Suh J.

Biotechnol Bioeng. 2018 Dec;115(12):3042-3049. doi: 10.1002/bit.26830. Epub 2018 Oct 1.

PMID:
30199099
2.

Phosphatase activity tunes two-component system sensor detection threshold.

Landry BP, Palanki R, Dyulgyarov N, Hartsough LA, Tabor JJ.

Nat Commun. 2018 Apr 12;9(1):1433. doi: 10.1038/s41467-018-03929-y.

3.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2018 Mar 19;15(1). pii: /j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml. doi: 10.1515/jib-2017-0074.

4.

A Miniaturized Escherichia coli Green Light Sensor with High Dynamic Range.

Ong NT, Tabor JJ.

Chembiochem. 2018 Jun 18;19(12):1255-1258. doi: 10.1002/cbic.201800007. Epub 2018 Mar 23.

PMID:
29420866
5.

Engineering an E. coli Near-Infrared Light Sensor.

Ong NT, Olson EJ, Tabor JJ.

ACS Synth Biol. 2018 Jan 19;7(1):240-248. doi: 10.1021/acssynbio.7b00289. Epub 2017 Nov 9.

PMID:
29091422
6.

Engineering Diagnostic and Therapeutic Gut Bacteria.

Landry BP, Tabor JJ.

Microbiol Spectr. 2017 Oct;5(5). doi: 10.1128/microbiolspec.BAD-0020-2017. Review.

PMID:
29052539
7.

A photoconversion model for full spectral programming and multiplexing of optogenetic systems.

Olson EJ, Tzouanas CN, Tabor JJ.

Mol Syst Biol. 2017 Apr 24;13(4):926. doi: 10.15252/msb.20167456.

8.

Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation.

Daeffler KN, Galley JD, Sheth RU, Ortiz-Velez LC, Bibb CO, Shroyer NF, Britton RA, Tabor JJ.

Mol Syst Biol. 2017 Apr 3;13(4):923. doi: 10.15252/msb.20167416.

9.

An open-hardware platform for optogenetics and photobiology.

Gerhardt KP, Olson EJ, Castillo-Hair SM, Hartsough LA, Landry BP, Ekness F, Yokoo R, Gomez EJ, Ramakrishnan P, Suh J, Savage DF, Tabor JJ.

Sci Rep. 2016 Nov 2;6:35363. doi: 10.1038/srep35363.

10.

Repurposing Synechocystis PCC6803 UirS-UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli.

Ramakrishnan P, Tabor JJ.

ACS Synth Biol. 2016 Jul 15;5(7):733-40. doi: 10.1021/acssynbio.6b00068. Epub 2016 May 11.

PMID:
27120220
11.

FlowCal: A User-Friendly, Open Source Software Tool for Automatically Converting Flow Cytometry Data from Arbitrary to Calibrated Units.

Castillo-Hair SM, Sexton JT, Landry BP, Olson EJ, Igoshin OA, Tabor JJ.

ACS Synth Biol. 2016 Jul 15;5(7):774-80. doi: 10.1021/acssynbio.5b00284. Epub 2016 May 12.

12.

Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery.

Gomez EJ, Gerhardt K, Judd J, Tabor JJ, Suh J.

ACS Nano. 2016 Jan 26;10(1):225-37. doi: 10.1021/acsnano.5b05558. Epub 2015 Nov 30.

PMID:
26618393
13.

How to train your microbe: methods for dynamically characterizing gene networks.

Castillo-Hair SM, Igoshin OA, Tabor JJ.

Curr Opin Microbiol. 2015 Apr;24:113-23. doi: 10.1016/j.mib.2015.01.008. Epub 2015 Feb 10. Review.

14.

Refactoring and optimization of light-switchable Escherichia coli two-component systems.

Schmidl SR, Sheth RU, Wu A, Tabor JJ.

ACS Synth Biol. 2014 Nov 21;3(11):820-31. doi: 10.1021/sb500273n. Epub 2014 Oct 11.

PMID:
25250630
15.

Optogenetic characterization methods overcome key challenges in synthetic and systems biology.

Olson EJ, Tabor JJ.

Nat Chem Biol. 2014 Jul;10(7):502-11. doi: 10.1038/nchembio.1559.

PMID:
24937068
16.

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals.

Olson EJ, Hartsough LA, Landry BP, Shroff R, Tabor JJ.

Nat Methods. 2014 Apr;11(4):449-55. doi: 10.1038/nmeth.2884. Epub 2014 Mar 9.

PMID:
24608181
17.

Modular gene-circuit design takes two steps forward.

Tabor JJ.

Nat Methods. 2012 Nov;9(11):1061-3. doi: 10.1038/nmeth.2217. No abstract available.

PMID:
23132116
18.

Post-translational tools expand the scope of synthetic biology.

Olson EJ, Tabor JJ.

Curr Opin Chem Biol. 2012 Aug;16(3-4):300-6. doi: 10.1016/j.cbpa.2012.06.003. Epub 2012 Jul 4. Review.

PMID:
22766485
19.

Non-transcriptional regulatory processes shape transcriptional network dynamics.

Ray JC, Tabor JJ, Igoshin OA.

Nat Rev Microbiol. 2011 Oct 11;9(11):817-28. doi: 10.1038/nrmicro2667. Review.

20.

Plate-based assays for light-regulated gene expression systems.

Tabor JJ.

Methods Enzymol. 2011;497:373-91. doi: 10.1016/B978-0-12-385075-1.00015-9.

PMID:
21601094
21.

Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'.

Tamsir A, Tabor JJ, Voigt CA.

Nature. 2011 Jan 13;469(7329):212-5. doi: 10.1038/nature09565. Epub 2010 Dec 8.

22.

Multichromatic control of gene expression in Escherichia coli.

Tabor JJ, Levskaya A, Voigt CA.

J Mol Biol. 2011 Jan 14;405(2):315-24. doi: 10.1016/j.jmb.2010.10.038. Epub 2010 Oct 28.

23.

A synthetic genetic edge detection program.

Tabor JJ, Salis HM, Simpson ZB, Chevalier AA, Levskaya A, Marcotte EM, Voigt CA, Ellington AD.

Cell. 2009 Jun 26;137(7):1272-81. doi: 10.1016/j.cell.2009.04.048.

24.

Engineering stochasticity in gene expression.

Tabor JJ, Bayer TS, Simpson ZB, Levy M, Ellington AD.

Mol Biosyst. 2008 Jul;4(7):754-61. doi: 10.1039/b801245h. Epub 2008 May 1.

25.

Developing RNA tools for engineered regulatory systems.

Tabor JJ, Davidson EA, Ellington AD.

Biotechnol Genet Eng Rev. 2006;22:21-44. Review. No abstract available.

PMID:
18476324
26.

Deoxyribozymes that recode sequence information.

Tabor JJ, Levy M, Ellington AD.

Nucleic Acids Res. 2006 Apr 28;34(8):2166-72. Print 2006.

27.

Synthetic biology: engineering Escherichia coli to see light.

Levskaya A, Chevalier AA, Tabor JJ, Simpson ZB, Lavery LA, Levy M, Davidson EA, Scouras A, Ellington AD, Marcotte EM, Voigt CA.

Nature. 2005 Nov 24;438(7067):441-2.

PMID:
16306980
28.

Playing to win at DNA computation.

Tabor JJ, Ellington AD.

Nat Biotechnol. 2003 Sep;21(9):1013-5. No abstract available.

PMID:
12949563

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