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Items: 1 to 50 of 100

1.

Development of new methods needs proper evaluation - benchmarking sets for machine learning experiments for class A GPCRs.

Leśniak D, Podlewska S, Jastrzębski S, Sieradzki I, Bojarski AJ, Tabor J.

J Chem Inf Model. 2019 Oct 11. doi: 10.1021/acs.jcim.9b00689. [Epub ahead of print]

PMID:
31604014
2.

Production of Phytochromes by High-Cell-Density E. coli Fermentation.

Hörner M, Gerhardt K, Salavei P, Hoess P, Härrer D, Kaiser J, Tabor JJ, Weber W.

ACS Synth Biol. 2019 Oct 18;8(10):2442-2450. doi: 10.1021/acssynbio.9b00267. Epub 2019 Sep 26.

PMID:
31526004
3.

When Two Wrongs Make a Right: The Effect of Acute and Chronic Binge Drinking on Traumatic Brain Injury Outcomes in Young Adult Female Rats.

Christensen J, Eyolfson E, Salberg S, Bhatt D, Weerawardhena H, Tabor J, Mychasiuk R.

J Neurotrauma. 2019 Sep 30. doi: 10.1089/neu.2019.6656. [Epub ahead of print]

PMID:
31418318
4.

DIY optogenetics: Building, programming, and using the Light Plate Apparatus.

Gerhardt KP, Castillo-Hair SM, Tabor JJ.

Methods Enzymol. 2019;624:197-226. doi: 10.1016/bs.mie.2019.04.018. Epub 2019 May 21.

PMID:
31370930
5.

Communicating Structure and Function in Synthetic Biology Diagrams.

Beal J, Nguyen T, Gorochowski TE, Goñi-Moreno A, Scott-Brown J, McLaughlin JA, Madsen C, Aleritsch B, Bartley B, Bhakta S, Bissell M, Castillo Hair S, Clancy K, Luna A, Le Novère N, Palchick Z, Pocock M, Sauro H, Sexton JT, Tabor JJ, Voigt CA, Zundel Z, Myers C, Wipat A.

ACS Synth Biol. 2019 Aug 16;8(8):1818-1825. doi: 10.1021/acssynbio.9b00139. Epub 2019 Aug 5.

PMID:
31348656
6.

Optogenetic control of Bacillus subtilis gene expression.

Castillo-Hair SM, Baerman EA, Fujita M, Igoshin OA, Tabor JJ.

Nat Commun. 2019 Jul 15;10(1):3099. doi: 10.1038/s41467-019-10906-6.

7.

Cohort Profile: The National Longitudinal Study of Adolescent to Adult Health (Add Health).

Harris KM, Halpern CT, Whitsel EA, Hussey JM, Killeya-Jones LA, Tabor J, Dean SC.

Int J Epidemiol. 2019 Oct 1;48(5):1415-1415k. doi: 10.1093/ije/dyz115. No abstract available.

PMID:
31257425
8.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, Nguyen T, Le Novere N, Pocock M, Sauro H, Scott-Brown J, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2019 Jun 13;16(2). pii: /j/jib.2019.16.issue-2/jib-2018-0101/jib-2018-0101.xml. doi: 10.1515/jib-2018-0101.

9.

An Engineered B. subtilis Inducible Promoter System with over 10 000-Fold Dynamic Range.

Castillo-Hair SM, Fujita M, Igoshin OA, Tabor JJ.

ACS Synth Biol. 2019 Jul 19;8(7):1673-1678. doi: 10.1021/acssynbio.8b00469. Epub 2019 Jun 28.

PMID:
31181163
10.

Neuroendocrine Whiplash: Slamming the Breaks on Anabolic-Androgenic Steroids Following Repetitive Mild Traumatic Brain Injury in Rats May Worsen Outcomes.

Tabor J, Collins R, Debert CT, Shultz SR, Mychasiuk R.

Front Neurol. 2019 May 8;10:481. doi: 10.3389/fneur.2019.00481. eCollection 2019.

11.

Rewiring bacterial two-component systems by modular DNA-binding domain swapping.

Schmidl SR, Ekness F, Sofjan K, Daeffler KN, Brink KR, Landry BP, Gerhardt KP, Dyulgyarov N, Sheth RU, Tabor JJ.

Nat Chem Biol. 2019 Jul;15(7):690-698. doi: 10.1038/s41589-019-0286-6. Epub 2019 May 20.

PMID:
31110305
12.

Three-dimensional descriptors for aminergic GPCRs: dependence on docking conformation and crystal structure.

Jastrzębski S, Sieradzki I, Leśniak D, Tabor J, Bojarski AJ, Podlewska S.

Mol Divers. 2019 Aug;23(3):603-613. doi: 10.1007/s11030-018-9894-4. Epub 2018 Nov 27.

13.

Investigating the Neurological Correlates of Workplace Deviance Using a Rodent Model of Extinction.

Tabor J, Griep Y, Collins R, Mychasiuk R.

Sci Rep. 2018 Nov 23;8(1):17316. doi: 10.1038/s41598-018-35748-y.

14.
15.

Regioselective Metal-Free Aza-Heck Reactions of Terminal Alkenes Catalyzed by Phosphine Selenides.

Zheng T, Tabor JR, Stein ZL, Michael FE.

Org Lett. 2018 Nov 2;20(21):6975-6978. doi: 10.1021/acs.orglett.8b03159. Epub 2018 Oct 19.

PMID:
30339017
16.

Reverse transduction can improve efficiency of AAV vectors in transduction-resistant cells.

Lee EJ, Robinson TM, Tabor JJ, Mikos AG, Suh J.

Biotechnol Bioeng. 2018 Dec;115(12):3042-3049. doi: 10.1002/bit.26830. Epub 2018 Oct 1.

PMID:
30199099
17.

A Bump on the Head or Late to Bed: Behavioral and Pathophysiological Effects of Sleep Deprivation after Repetitive Mild Traumatic Brain Injury in Adolescent Rats.

Salberg S, Christensen J, Yamakawa GR, Lengkeek C, Malik H, Tabor J, Hazari A, Mychasiuk R.

J Neurotrauma. 2018 Aug 15;35(16):1895-1905. doi: 10.1089/neu.2018.5744.

PMID:
30074871
18.

Phosphatase activity tunes two-component system sensor detection threshold.

Landry BP, Palanki R, Dyulgyarov N, Hartsough LA, Tabor JJ.

Nat Commun. 2018 Apr 12;9(1):1433. doi: 10.1038/s41467-018-03929-y.

19.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2018 Mar 19;15(1). pii: /j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml. doi: 10.1515/jib-2017-0074.

20.

A Miniaturized Escherichia coli Green Light Sensor with High Dynamic Range.

Ong NT, Tabor JJ.

Chembiochem. 2018 Jun 18;19(12):1255-1258. doi: 10.1002/cbic.201800007. Epub 2018 Mar 23.

PMID:
29420866
21.

Role of Nursing Competencies for Accelerating Clinical Trials in Stem Cell Clinics.

Perrin M, Kim T, Stan R, Giesie P, Tabor J, Le Verche V, Johnson S, Lomax GP, Zaia JA.

Stem Cells Transl Med. 2018 Jan;7(1):6-10. doi: 10.1002/sctm.17-0165. Epub 2017 Nov 3.

22.

Engineering an E. coli Near-Infrared Light Sensor.

Ong NT, Olson EJ, Tabor JJ.

ACS Synth Biol. 2018 Jan 19;7(1):240-248. doi: 10.1021/acssynbio.7b00289. Epub 2017 Nov 9.

PMID:
29091422
23.

Engineering Diagnostic and Therapeutic Gut Bacteria.

Landry BP, Tabor JJ.

Microbiol Spectr. 2017 Oct;5(5). doi: 10.1128/microbiolspec.BAD-0020-2017. Review.

PMID:
29052539
24.

A photoconversion model for full spectral programming and multiplexing of optogenetic systems.

Olson EJ, Tzouanas CN, Tabor JJ.

Mol Syst Biol. 2017 Apr 24;13(4):926. doi: 10.15252/msb.20167456.

25.

Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation.

Daeffler KN, Galley JD, Sheth RU, Ortiz-Velez LC, Bibb CO, Shroyer NF, Britton RA, Tabor JJ.

Mol Syst Biol. 2017 Apr 3;13(4):923. doi: 10.15252/msb.20167416.

26.

An open-hardware platform for optogenetics and photobiology.

Gerhardt KP, Olson EJ, Castillo-Hair SM, Hartsough LA, Landry BP, Ekness F, Yokoo R, Gomez EJ, Ramakrishnan P, Suh J, Savage DF, Tabor JJ.

Sci Rep. 2016 Nov 2;6:35363. doi: 10.1038/srep35363.

27.

Repurposing Synechocystis PCC6803 UirS-UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli.

Ramakrishnan P, Tabor JJ.

ACS Synth Biol. 2016 Jul 15;5(7):733-40. doi: 10.1021/acssynbio.6b00068. Epub 2016 May 11.

PMID:
27120220
28.

FlowCal: A User-Friendly, Open Source Software Tool for Automatically Converting Flow Cytometry Data from Arbitrary to Calibrated Units.

Castillo-Hair SM, Sexton JT, Landry BP, Olson EJ, Igoshin OA, Tabor JJ.

ACS Synth Biol. 2016 Jul 15;5(7):774-80. doi: 10.1021/acssynbio.5b00284. Epub 2016 May 12.

29.

Depression, Stressful Life Events, and the Impact of Variation in the Serotonin Transporter: Findings from the National Longitudinal Study of Adolescent to Adult Health (Add Health).

Haberstick BC, Boardman JD, Wagner B, Smolen A, Hewitt JK, Killeya-Jones LA, Tabor J, Halpern CT, Brummett BH, Williams RB, Siegler IC, Hopfer CJ, Mullan Harris K.

PLoS One. 2016 Mar 3;11(3):e0148373. doi: 10.1371/journal.pone.0148373. eCollection 2016.

30.

Variation in treatment modalities, costs and outcomes of rectal cancer patients in Poland.

Herman KJ, Komorowski AL, Wysocki WM, Tabor J, Herman RM, Śliwczyński A.

Contemp Oncol (Pozn). 2015;19(5):400-9. doi: 10.5114/wo.2015.56010. Epub 2015 Dec 22.

31.

Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery.

Gomez EJ, Gerhardt K, Judd J, Tabor JJ, Suh J.

ACS Nano. 2016 Jan 26;10(1):225-37. doi: 10.1021/acsnano.5b05558. Epub 2015 Nov 30.

PMID:
26618393
32.

The reliability of in-home measures of height and weight in large cohort studies: Evidence from Add Health.

Hussey JM, Nguyen QC, Whitsel EA, Richardson LJ, Halpern CT, Gordon-Larsen P, Tabor JW, Entzel PP, Harris KM.

Demogr Res. 2015 Jan-Jun;32:1081-1098.

33.

How to train your microbe: methods for dynamically characterizing gene networks.

Castillo-Hair SM, Igoshin OA, Tabor JJ.

Curr Opin Microbiol. 2015 Apr;24:113-23. doi: 10.1016/j.mib.2015.01.008. Epub 2015 Feb 10. Review.

34.

Blood spot-based measures of glucose homeostasis and diabetes prevalence in a nationally representative population of young US adults.

Nguyen QC, Whitsel EA, Tabor JW, Cuthbertson CC, Wener MH, Potter AJ, Halpern CT, Killeya-Jones LA, Hussey JM, Suchindran C, Harris KM.

Ann Epidemiol. 2014 Dec;24(12):903-9.e1. doi: 10.1016/j.annepidem.2014.09.010. Epub 2014 Oct 22.

35.

The National Longitudinal Study of Adolescent to Adult Health (Add Health) sibling pairs genome-wide data.

McQueen MB, Boardman JD, Domingue BW, Smolen A, Tabor J, Killeya-Jones L, Halpern CT, Whitsel EA, Harris KM.

Behav Genet. 2015 Jan;45(1):12-23. doi: 10.1007/s10519-014-9692-4. Epub 2014 Nov 7.

36.

Refactoring and optimization of light-switchable Escherichia coli two-component systems.

Schmidl SR, Sheth RU, Wu A, Tabor JJ.

ACS Synth Biol. 2014 Nov 21;3(11):820-31. doi: 10.1021/sb500273n. Epub 2014 Oct 11.

PMID:
25250630
37.

Asymmetric clustering index in a case study of 5-HT1A receptor ligands.

Śmieja M, Warszycki D, Tabor J, Bojarski AJ.

PLoS One. 2014 Jul 14;9(7):e102069. doi: 10.1371/journal.pone.0102069. eCollection 2014.

38.

Optogenetic characterization methods overcome key challenges in synthetic and systems biology.

Olson EJ, Tabor JJ.

Nat Chem Biol. 2014 Jul;10(7):502-11. doi: 10.1038/nchembio.1559.

PMID:
24937068
39.

Simple sequence repeats in the national longitudinal study of adolescent health: an ethnically diverse resource for genetic analysis of health and behavior.

Haberstick BC, Smolen A, Stetler GL, Tabor JW, Roy T, Rick Casey H, Pardo A, Roy F, Ryals LA, Hewitt C, Whitsel EA, Halpern CT, Killeya-Jones LA, Lessem JM, Hewitt JK, Harris KM.

Behav Genet. 2014 Sep;44(5):487-97. doi: 10.1007/s10519-014-9662-x. Epub 2014 Jun 3.

40.

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals.

Olson EJ, Hartsough LA, Landry BP, Shroff R, Tabor JJ.

Nat Methods. 2014 Apr;11(4):449-55. doi: 10.1038/nmeth.2884. Epub 2014 Mar 9.

PMID:
24608181
41.

Social, behavioral, and genetic linkages from adolescence into adulthood.

Harris KM, Halpern CT, Hussey J, Whitsel EA, Killeya-Jones L, Tabor J, Elder G, Hewitt J, Shanahan M, Williams R, Siegler I, Smolen A.

Am J Public Health. 2013 Oct;103 Suppl 1:S25-32. doi: 10.2105/AJPH.2012.301181. Epub 2013 Aug 8.

42.

MAOA genotype, childhood maltreatment, and their interaction in the etiology of adult antisocial behaviors.

Haberstick BC, Lessem JM, Hewitt JK, Smolen A, Hopfer CJ, Halpern CT, Killeya-Jones LA, Boardman JD, Tabor J, Siegler IC, Williams RB, Mullan Harris K.

Biol Psychiatry. 2014 Jan 1;75(1):25-30. doi: 10.1016/j.biopsych.2013.03.028. Epub 2013 May 28.

43.

Modular gene-circuit design takes two steps forward.

Tabor JJ.

Nat Methods. 2012 Nov;9(11):1061-3. doi: 10.1038/nmeth.2217. No abstract available.

PMID:
23132116
44.

Post-translational tools expand the scope of synthetic biology.

Olson EJ, Tabor JJ.

Curr Opin Chem Biol. 2012 Aug;16(3-4):300-6. doi: 10.1016/j.cbpa.2012.06.003. Epub 2012 Jul 4. Review.

PMID:
22766485
45.

Non-transcriptional regulatory processes shape transcriptional network dynamics.

Ray JC, Tabor JJ, Igoshin OA.

Nat Rev Microbiol. 2011 Oct 11;9(11):817-28. doi: 10.1038/nrmicro2667. Review.

46.

A tale of two countries: rethinking sexual risk for HIV among young people in South Africa and the United States.

Pettifor AE, Levandowski BA, Macphail C, Miller WC, Tabor J, Ford C, Stein CR, Rees H, Cohen M.

J Adolesc Health. 2011 Sep;49(3):237-243.e1. doi: 10.1016/j.jadohealth.2010.10.002. Epub 2011 Mar 23.

47.

Discordance in national estimates of hypertension among young adults.

Nguyen QC, Tabor JW, Entzel PP, Lau Y, Suchindran C, Hussey JM, Halpern CT, Harris KM, Whitsel EA.

Epidemiology. 2011 Jul;22(4):532-41. doi: 10.1097/EDE.0b013e31821c79d2.

48.

Plate-based assays for light-regulated gene expression systems.

Tabor JJ.

Methods Enzymol. 2011;497:373-91. doi: 10.1016/B978-0-12-385075-1.00015-9.

PMID:
21601094
49.

Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'.

Tamsir A, Tabor JJ, Voigt CA.

Nature. 2011 Jan 13;469(7329):212-5. doi: 10.1038/nature09565. Epub 2010 Dec 8.

50.

Multichromatic control of gene expression in Escherichia coli.

Tabor JJ, Levskaya A, Voigt CA.

J Mol Biol. 2011 Jan 14;405(2):315-24. doi: 10.1016/j.jmb.2010.10.038. Epub 2010 Oct 28.

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