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Items: 16


Population genomic analyses reveal connectivity via human-mediated transport across Populus plantations in North America and an undescribed sub-population of Sphaerulina musiva.

Tabima JF, Sondreli K, Kerio S, Feau N, Sakalidis ML, Hamelin R, Leboldus J.

Mol Plant Microbe Interact. 2019 Oct 8. doi: 10.1094/MPMI-05-19-0131-R. [Epub ahead of print]


effectR: An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches.

Tabima JF, Grünwald NJ.

Mol Plant Microbe Interact. 2019 Sep;32(9):1067-1076. doi: 10.1094/MPMI-10-18-0279-TA. Epub 2019 Jul 18.


Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum.

Dale AL, Feau N, Everhart SE, Dhillon B, Wong B, Sheppard J, Bilodeau GJ, Brar A, Tabima JF, Shen D, Brasier CM, Tyler BM, Grünwald NJ, Hamelin RC.

MBio. 2019 Mar 12;10(2). pii: e02452-18. doi: 10.1128/mBio.02452-18.


Evolution of the U.S. Biological Select Agent Rathayibacter toxicus.

Davis EW 2nd, Tabima JF, Weisberg AJ, Lopes LD, Wiseman MS, Wiseman MS, Pupko T, Belcher MS, Sechler AJ, Tancos MA, Schroeder BK, Murray TD, Luster DG, Schneider WL, Rogers EE, Andreote FD, Grünwald NJ, Putnam ML, Chang JH.

MBio. 2018 Aug 28;9(4). pii: e01280-18. doi: 10.1128/mBio.01280-18.


Populations of Phytophthora rubi Show Little Differentiation and High Rates of Migration Among States in the Western United States.

Tabima JF, Coffey MD, Zazada IA, Grünwald NJ.

Mol Plant Microbe Interact. 2018 Jun;31(6):614-622. doi: 10.1094/MPMI-10-17-0258-R. Epub 2018 Apr 11.


Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae.

Tabima JF, Kronmiller BA, Press CM, Tyler BM, Zasada IA, Grünwald NJ.

Mol Plant Microbe Interact. 2017 Oct;30(10):767-769. doi: 10.1094/MPMI-04-17-0081-A. Epub 2017 Aug 22.


A Covert Operation by a Plant Pathogen.

Chang JH, Tabima JF.

Cell Host Microbe. 2016 Oct 12;20(4):413-415. doi: 10.1016/j.chom.2016.09.010.


Microbe-ID: an open source toolbox for microbial genotyping and species identification.

Tabima JF, Everhart SE, Larsen MM, Weisberg AJ, Kamvar ZN, Tancos MA, Smart CD, Chang JH, Grünwald NJ.

PeerJ. 2016 Aug 18;4:e2279. doi: 10.7717/peerj.2279. eCollection 2016.


Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria.

Davis Ii EW, Weisberg AJ, Tabima JF, Grunwald NJ, Chang JH.

PeerJ. 2016 Jul 19;4:e2222. doi: 10.7717/peerj.2222. eCollection 2016.


SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis.

Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD.

Plant Dis. 2016 Jul;100(7):1297-1306. doi: 10.1094/PDIS-11-15-1247-RE. Epub 2016 Mar 10.


Loop-mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans.

Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD.

J Appl Microbiol. 2016 Apr;120(4):1010-20. doi: 10.1111/jam.13079. Epub 2016 Mar 7.


Pathogenicity, Fungicide Resistance, and Genetic Variability of Phytophthora rubi Isolates from Raspberry (Rubus idaeus) in the Western United States.

Stewart JE, Kroese D, Tabima JF, Larsen MM, Fieland VJ, Press CM, Zasada IA, Grünwald NJ.

Plant Dis. 2014 Dec;98(12):1702-1708. doi: 10.1094/PDIS-11-13-1130-RE.


Speciation in fungal and oomycete plant pathogens.

Restrepo S, Tabima JF, Mideros MF, Grünwald NJ, Matute DR.

Annu Rev Phytopathol. 2014;52:289-316. doi: 10.1146/annurev-phyto-102313-050056. Epub 2014 May 30. Review.


The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes.

Goss EM, Tabima JF, Cooke DE, Restrepo S, Fry WE, Forbes GA, Fieland VJ, Cardenas M, Grünwald NJ.

Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8791-6. doi: 10.1073/pnas.1401884111. Epub 2014 Jun 2.


Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction.

Kamvar ZN, Tabima JF, Grünwald NJ.

PeerJ. 2014 Mar 4;2:e281. doi: 10.7717/peerj.281. eCollection 2014.

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