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Items: 1 to 50 of 183

1.

Correction: Diet of the brown bear in Himalaya: Combining classical and molecular genetic techniques.

Nawaz MA, Valentini A, Khan NK, Miquel C, Taberlet P, Swenson JE.

PLoS One. 2020 Mar 24;15(3):e0230987. doi: 10.1371/journal.pone.0230987. eCollection 2020.

2.

Editorial 2020.

Rieseberg L, Geraldes A, Taberlet P.

Mol Ecol. 2020 Jan;29(1):1-19. doi: 10.1111/mec.15328. No abstract available.

PMID:
31916358
3.

Diet of the brown bear in Himalaya: Combining classical and molecular genetic techniques.

Nawaz MA, Valentini A, Khan NK, Miquel C, Taberlet P, Swenson JE.

PLoS One. 2019 Dec 26;14(12):e0225698. doi: 10.1371/journal.pone.0225698. eCollection 2019. Erratum in: PLoS One. 2020 Mar 24;15(3):e0230987.

4.

Brazilian montane rainforest expansion induced by Heinrich Stadial 1 event.

Pinaya JLD, Cruz FW, Ceccantini GCT, Corrêa PLP, Pitman N, Vemado F, Lopez MDCS, Pereira Filho AJ, Grohmann CH, Chiessi CM, Stríkis NM, Horák-Terra I, Pinaya WHL, de Medeiros VB, Santos RA, Akabane TK, Silva MA, Cheddadi R, Bush M, Henrot AJ, François L, Hambuckers A, Boyer F, Carré M, Coissac E, Ficetola F, Huang K, Lézine AM, Nourelbait M, Rhoujjati A, Taberlet P, Sarmiento F, Abel-Schaad D, Alba-Sánchez F, Zheng Z, De Oliveira PE.

Sci Rep. 2019 Nov 29;9(1):17912. doi: 10.1038/s41598-019-53036-1.

5.

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA-based census of soil biodiversity from a tropical forest.

Sommeria-Klein G, Zinger L, Coissac E, Iribar A, Schimann H, Taberlet P, Chave J.

Mol Ecol Resour. 2020 Mar;20(2):371-386. doi: 10.1111/1755-0998.13109. Epub 2019 Dec 2.

PMID:
31650682
6.

New insights on lake sediment DNA from the catchment: importance of taphonomic and analytical issues on the record quality.

Giguet-Covex C, Ficetola GF, Walsh K, Poulenard J, Bajard M, Fouinat L, Sabatier P, Gielly L, Messager E, Develle AL, David F, Taberlet P, Brisset E, Guiter F, Sinet R, Arnaud F.

Sci Rep. 2019 Oct 11;9(1):14676. doi: 10.1038/s41598-019-50339-1.

7.

An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity.

Benjelloun B, Boyer F, Streeter I, Zamani W, Engelen S, Alberti A, Alberto FJ, BenBati M, Ibnelbachyr M, Chentouf M, Bechchari A, Rezaei HR, Naderi S, Stella A, Chikhi A, Clarke L, Kijas J, Flicek P, Taberlet P, Pompanon F.

Mol Ecol Resour. 2019 Nov;19(6):1497-1515. doi: 10.1111/1755-0998.13070. Epub 2019 Sep 9.

PMID:
31359622
8.

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions.

Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I.

Sci Adv. 2019 Jul 3;5(7):eaav8391. doi: 10.1126/sciadv.aav8391. eCollection 2019 Jul.

9.

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.

Zinger L, Bonin A, Alsos IG, Bálint M, Bik H, Boyer F, Chariton AA, Creer S, Coissac E, Deagle BE, De Barba M, Dickie IA, Dumbrell AJ, Ficetola GF, Fierer N, Fumagalli L, Gilbert MTP, Jarman S, Jumpponen A, Kauserud H, Orlando L, Pansu J, Pawlowski J, Tedersoo L, Thomsen PF, Willerslev E, Taberlet P.

Mol Ecol. 2019 Apr;28(8):1857-1862. doi: 10.1111/mec.15060. Epub 2019 Apr 29. No abstract available.

10.

Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers.

Cantera I, Cilleros K, Valentini A, Cerdan A, Dejean T, Iribar A, Taberlet P, Vigouroux R, Brosse S.

Sci Rep. 2019 Feb 28;9(1):3085. doi: 10.1038/s41598-019-39399-5.

11.

Body size determines soil community assembly in a tropical forest.

Zinger L, Taberlet P, Schimann H, Bonin A, Boyer F, De Barba M, Gaucher P, Gielly L, Giguet-Covex C, Iribar A, Réjou-Méchain M, Rayé G, Rioux D, Schilling V, Tymen B, Viers J, Zouiten C, Thuiller W, Coissac E, Chave J.

Mol Ecol. 2019 Feb;28(3):528-543. doi: 10.1111/mec.14919. Epub 2018 Nov 22.

PMID:
30375061
12.

Environmental DNA Time Series in Ecology.

Bálint M, Pfenninger M, Grossart HP, Taberlet P, Vellend M, Leibold MA, Englund G, Bowler D.

Trends Ecol Evol. 2018 Dec;33(12):945-957. doi: 10.1016/j.tree.2018.09.003. Epub 2018 Oct 9. Review.

PMID:
30314916
13.

Mapping the imprint of biotic interactions on β-diversity.

Ohlmann M, Mazel F, Chalmandrier L, Bec S, Coissac E, Gielly L, Pansu J, Schilling V, Taberlet P, Zinger L, Chave J, Thuiller W.

Ecol Lett. 2018 Nov;21(11):1660-1669. doi: 10.1111/ele.13143. Epub 2018 Aug 28.

PMID:
30152092
14.

Howling from the past: historical phylogeography and diversity losses in European grey wolves.

Dufresnes C, Miquel C, Remollino N, Biollaz F, Salamin N, Taberlet P, Fumagalli L.

Proc Biol Sci. 2018 Aug 1;285(1884). pii: 20181148. doi: 10.1098/rspb.2018.1148.

15.

Diet shifts by adult flightless dung beetles Circellium bacchus, revealed using DNA metabarcoding, reflect complex life histories.

Kerley GIH, Landman M, Ficetola GF, Boyer F, Bonin A, Rioux D, Taberlet P, Coissac E.

Oecologia. 2018 Sep;188(1):107-115. doi: 10.1007/s00442-018-4203-6. Epub 2018 Jun 30.

PMID:
29961180
16.

Unlocking biodiversity and conservation studies in high-diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes.

Cilleros K, Valentini A, Allard L, Dejean T, Etienne R, Grenouillet G, Iribar A, Taberlet P, Vigouroux R, Brosse S.

Mol Ecol Resour. 2019 Jan;19(1):27-46. doi: 10.1111/1755-0998.12900. Epub 2018 Jun 5.

PMID:
29768738
17.

DNA from lake sediments reveals long-term ecosystem changes after a biological invasion.

Ficetola GF, Poulenard J, Sabatier P, Messager E, Gielly L, Leloup A, Etienne D, Bakke J, Malet E, Fanget B, Støren E, Reyss JL, Taberlet P, Arnaud F.

Sci Adv. 2018 May 9;4(5):eaar4292. doi: 10.1126/sciadv.aar4292. eCollection 2018 May.

18.

Convergent genomic signatures of domestication in sheep and goats.

Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, Joost S, Ajmone-Marsan P, Negrini R, Orlando L, Rezaei HR, Naderi S, Clarke L, Flicek P, Wincker P, Coissac E, Kijas J, Tosser-Klopp G, Chikhi A, Bruford MW, Taberlet P, Pompanon F.

Nat Commun. 2018 Mar 6;9(1):813. doi: 10.1038/s41467-018-03206-y.

19.

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds.

Naval-Sanchez M, Nguyen Q, McWilliam S, Porto-Neto LR, Tellam R, Vuocolo T, Reverter A, Perez-Enciso M, Brauning R, Clarke S, McCulloch A, Zamani W, Naderi S, Rezaei HR, Pompanon F, Taberlet P, Worley KC, Gibbs RA, Muzny DM, Jhangiani SN, Cockett N, Daetwyler H, Kijas J.

Nat Commun. 2018 Feb 28;9(1):859. doi: 10.1038/s41467-017-02809-1.

20.

Lack of evidence for selection favouring MHC haplotypes that combine high functional diversity.

Gaigher A, Roulin A, Gharib WH, Taberlet P, Burri R, Fumagalli L.

Heredity (Edinb). 2018 May;120(5):396-406. doi: 10.1038/s41437-017-0047-9. Epub 2018 Jan 24.

21.

Ancient environmental DNA reveals shifts in dominant mutualisms during the late Quaternary.

Zobel M, Davison J, Edwards ME, Brochmann C, Coissac E, Taberlet P, Willerslev E, Moora M.

Nat Commun. 2018 Jan 10;9(1):139. doi: 10.1038/s41467-017-02421-3.

22.

Evaluating the impact of domestication and captivity on the horse gut microbiome.

Metcalf JL, Song SJ, Morton JT, Weiss S, Seguin-Orlando A, Joly F, Feh C, Taberlet P, Coissac E, Amir A, Willerslev E, Knight R, McKenzie V, Orlando L.

Sci Rep. 2017 Nov 14;7(1):15497. doi: 10.1038/s41598-017-15375-9.

23.

Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA.

Guardiola M, Wangensteen OS, Taberlet P, Coissac E, Uriz MJ, Turon X.

PeerJ. 2016 Dec 21;4:e2807. doi: 10.7717/peerj.2807. eCollection 2016.

24.

Corrigendum to "Evolution and taxonomy of the wild species of the genus Ovis (Mammalia, Artiodactyla, Bovidae)" [Mol. Phylogenet. Evol. 54(2) (2010) 315-326].

Rezaei HR, Naderi S, Chintauan-Marquier IC, Jordan S, Taberlet P, Virk AT, Naghash HR, Rioux D, Kaboli M, Luikart G, Pompanon F.

Mol Phylogenet Evol. 2017 Apr;109:465. doi: 10.1016/j.ympev.2016.11.011. Epub 2016 Nov 27. No abstract available.

PMID:
27899018
25.

High performance computation of landscape genomic models including local indicators of spatial association.

Stucki S, Orozco-terWengel P, Forester BR, Duruz S, Colli L, Masembe C, Negrini R, Landguth E, Jones MR; NEXTGEN Consortium, Bruford MW, Taberlet P, Joost S.

Mol Ecol Resour. 2017 Sep;17(5):1072-1089. doi: 10.1111/1755-0998.12629. Epub 2016 Nov 28.

PMID:
27801969
26.

Inferring neutral biodiversity parameters using environmental DNA data sets.

Sommeria-Klein G, Zinger L, Taberlet P, Coissac E, Chave J.

Sci Rep. 2016 Oct 20;6:35644. doi: 10.1038/srep35644.

27.

Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples.

Schneider J, Valentini A, Dejean T, Montarsi F, Taberlet P, Glaizot O, Fumagalli L.

PLoS One. 2016 Sep 14;11(9):e0162493. doi: 10.1371/journal.pone.0162493. eCollection 2016.

28.

High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA.

De Barba M, Miquel C, Lobréaux S, Quenette PY, Swenson JE, Taberlet P.

Mol Ecol Resour. 2017 May;17(3):492-507. doi: 10.1111/1755-0998.12594. Epub 2016 Aug 29.

PMID:
27505280
29.

Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae).

Roquet C, Coissac É, Cruaud C, Boleda M, Boyer F, Alberti A, Gielly L, Taberlet P, Thuiller W, Van Es J, Lavergne S.

Ann Bot. 2016 Oct 1;118(5):885-896. doi: 10.1093/aob/mcw135.

30.

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System.

Civade R, Dejean T, Valentini A, Roset N, Raymond JC, Bonin A, Taberlet P, Pont D.

PLoS One. 2016 Jun 30;11(6):e0157366. doi: 10.1371/journal.pone.0157366. eCollection 2016.

31.

Using metabarcoding to reveal and quantify plant-pollinator interactions.

Pornon A, Escaravage N, Burrus M, Holota H, Khimoun A, Mariette J, Pellizzari C, Iribar A, Etienne R, Taberlet P, Vidal M, Winterton P, Zinger L, Andalo C.

Sci Rep. 2016 Jun 3;6:27282. doi: 10.1038/srep27282.

32.

Family-assisted inference of the genetic architecture of major histocompatibility complex variation.

Gaigher A, Burri R, Gharib WH, Taberlet P, Roulin A, Fumagalli L.

Mol Ecol Resour. 2016 Nov;16(6):1353-1364. doi: 10.1111/1755-0998.12537. Epub 2016 Jun 4.

PMID:
27176619
33.

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects.

Elbrecht V, Taberlet P, Dejean T, Valentini A, Usseglio-Polatera P, Beisel JN, Coissac E, Boyer F, Leese F.

PeerJ. 2016 Apr 19;4:e1966. doi: 10.7717/peerj.1966. eCollection 2016.

34.

Correction: Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons.

Guardiola M, Uriz MJ, Taberlet P, Coissac E, Wangensteen OS, Turon X.

PLoS One. 2016 Apr 13;11(4):e0153836. doi: 10.1371/journal.pone.0153836. eCollection 2016. No abstract available.

35.

How to limit false positives in environmental DNA and metabarcoding?

Ficetola GF, Taberlet P, Coissac E.

Mol Ecol Resour. 2016 May;16(3):604-7. doi: 10.1111/1755-0998.12508.

PMID:
27062589
36.

Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community.

Tapio I, Shingfield KJ, McKain N, Bonin A, Fischer D, Bayat AR, Vilkki J, Taberlet P, Snelling TJ, Wallace RJ.

PLoS One. 2016 Mar 17;11(3):e0151220. doi: 10.1371/journal.pone.0151220. eCollection 2016.

37.

From barcodes to genomes: extending the concept of DNA barcoding.

Coissac E, Hollingsworth PM, Lavergne S, Taberlet P.

Mol Ecol. 2016 Apr;25(7):1423-8. doi: 10.1111/mec.13549. Epub 2016 Mar 14.

PMID:
26821259
38.

Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability.

Colli L, Lancioni H, Cardinali I, Olivieri A, Capodiferro MR, Pellecchia M, Rzepus M, Zamani W, Naderi S, Gandini F, Vahidi SM, Agha S, Randi E, Battaglia V, Sardina MT, Portolano B, Rezaei HR, Lymberakis P, Boyer F, Coissac E, Pompanon F, Taberlet P, Ajmone Marsan P, Achilli A.

BMC Genomics. 2015 Dec 29;16:1115. doi: 10.1186/s12864-015-2342-2.

39.

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding.

Valentini A, Taberlet P, Miaud C, Civade R, Herder J, Thomsen PF, Bellemain E, Besnard A, Coissac E, Boyer F, Gaboriaud C, Jean P, Poulet N, Roset N, Copp GH, Geniez P, Pont D, Argillier C, Baudoin JM, Peroux T, Crivelli AJ, Olivier A, Acqueberge M, Le Brun M, Møller PR, Willerslev E, Dejean T.

Mol Ecol. 2016 Feb;25(4):929-42. doi: 10.1111/mec.13428. Epub 2016 Jan 18.

PMID:
26479867
40.

Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons.

Guardiola M, Uriz MJ, Taberlet P, Coissac E, Wangensteen OS, Turon X.

PLoS One. 2015 Oct 5;10(10):e0139633. doi: 10.1371/journal.pone.0139633. eCollection 2015. Erratum in: PLoS One. 2016;11(4):e0153836.

41.

Long-lasting modification of soil fungal diversity associated with the introduction of rabbits to a remote sub-Antarctic archipelago.

Pansu J, Winkworth RC, Hennion F, Gielly L, Taberlet P, Choler P.

Biol Lett. 2015 Sep;11(9):20150408. doi: 10.1098/rsbl.2015.0408.

42.

Upscaling the niche variation hypothesis from the intra- to the inter-specific level.

Bison M, Ibanez S, Redjadj C, Boyer F, Coissac E, Miquel C, Rioux D, Said S, Maillard D, Taberlet P, Yoccoz NG, Loison A.

Oecologia. 2015 Nov;179(3):835-42. doi: 10.1007/s00442-015-3390-7. Epub 2015 Jul 22.

PMID:
26198049
43.

Metagenome skimming for phylogenetic community ecology: a new era in biodiversity research.

Papadopoulou A, Taberlet P, Zinger L.

Mol Ecol. 2015 Jul;24(14):3515-7. doi: 10.1111/mec.13263.

44.

obitools: a unix-inspired software package for DNA metabarcoding.

Boyer F, Mercier C, Bonin A, Le Bras Y, Taberlet P, Coissac E.

Mol Ecol Resour. 2016 Jan;16(1):176-82. doi: 10.1111/1755-0998.12428. Epub 2015 May 26.

PMID:
25959493
45.

Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data.

Benjelloun B, Alberto FJ, Streeter I, Boyer F, Coissac E, Stucki S, BenBati M, Ibnelbachyr M, Chentouf M, Bechchari A, Leempoel K, Alberti A, Engelen S, Chikhi A, Clarke L, Flicek P, Joost S, Taberlet P, Pompanon F; NextGen Consortium.

Front Genet. 2015 Apr 7;6:107. doi: 10.3389/fgene.2015.00107. eCollection 2015.

46.

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA.

Pansu J, Giguet-Covex C, Ficetola GF, Gielly L, Boyer F, Zinger L, Arnaud F, Poulenard J, Taberlet P, Choler P.

Mol Ecol. 2015 Apr;24(7):1485-98. doi: 10.1111/mec.13136. Epub 2015 Mar 23.

PMID:
25735209
47.

DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents.

Lopes CM, De Barba M, Boyer F, Mercier C, da Silva Filho PJ, Heidtmann LM, Galiano D, Kubiak BB, Langone P, Garcias FM, Gielly L, Coissac E, de Freitas TR, Taberlet P.

Heredity (Edinb). 2015 May;114(5):525-36. doi: 10.1038/hdy.2014.109. Epub 2015 Feb 4.

48.

Highly overlapping winter diet in two sympatric lemming species revealed by DNA metabarcoding.

Soininen EM, Gauthier G, Bilodeau F, Berteaux D, Gielly L, Taberlet P, Gussarova G, Bellemain E, Hassel K, Stenøien HK, Epp L, Schrøder-Nielsen A, Brochmann C, Yoccoz NG.

PLoS One. 2015 Jan 30;10(1):e0115335. doi: 10.1371/journal.pone.0115335. eCollection 2015.

49.

No evidence for the effect of MHC on male mating success in the brown bear.

Kuduk K, Babik W, Bellemain E, Valentini A, Zedrosser A, Taberlet P, Kindberg J, Swenson JE, Radwan J.

PLoS One. 2014 Dec 3;9(12):e113414. doi: 10.1371/journal.pone.0113414. eCollection 2014.

50.

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data.

Ficetola GF, Pansu J, Bonin A, Coissac E, Giguet-Covex C, De Barba M, Gielly L, Lopes CM, Boyer F, Pompanon F, Rayé G, Taberlet P.

Mol Ecol Resour. 2015 May;15(3):543-56. doi: 10.1111/1755-0998.12338. Epub 2014 Nov 10.

PMID:
25327646

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