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Items: 1 to 50 of 113

1.

Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.

Iwata M, Yuan L, Zhao Q, Tabei Y, Berenger F, Sawada R, Akiyoshi S, Hamano M, Yamanishi Y.

Bioinformatics. 2019 Jul 15;35(14):i191-i199. doi: 10.1093/bioinformatics/btz313.

2.

Comparison of proinflammatory potential of needle-shaped materials: aragonite and potassium titanate whisker.

Horie M, Tabei Y, Sugino S, Eguchi K, Chiba R, Tajika M.

Arch Toxicol. 2019 Oct;93(10):2797-2810. doi: 10.1007/s00204-019-02556-w. Epub 2019 Sep 6.

PMID:
31493027
3.

Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.

Oshima M, Taniguchi Y, Akasaka M, Abe K, Ichikawa H, Tabei Y, Tanaka J.

Breed Sci. 2019 Jun;69(2):244-254. doi: 10.1270/jsbbs.18151. Epub 2019 Mar 15.

4.

Comparison of the effects of multiwall carbon nanotubes on the epithelial cells and macrophages.

Horie M, Tabei Y, Sugino S, Fukui H, Nishioka A, Hagiwara Y, Sato K, Yoneda T, Tada A, Koyama T.

Nanotoxicology. 2019 Sep;13(7):861-878. doi: 10.1080/17435390.2019.1592258. Epub 2019 Jul 26.

PMID:
31349755
5.

Highly Selective Aluminum(III) Ion Sensing with Luminescent Iridium(III) Complexes Bearing a Distorted 2,2'-Bipyridine-3,3'-diol Moiety Utilizing a Rigidified Seven-Membered Chelate Ring.

Suzuki Y, Mizuno I, Tabei Y, Fujioka Y, Shinozaki K, Sugaya T, Ishihara K.

Inorg Chem. 2019 Aug 5;58(15):9663-9671. doi: 10.1021/acs.inorgchem.9b00373. Epub 2019 Jul 22.

PMID:
31328918
6.

Risk and safety considerations 2: genetic variations and potential risks-traditional breeding and genome editing.

Tabei Y.

Transgenic Res. 2019 Aug;28(Suppl 2):119-124. doi: 10.1007/s11248-019-00144-3. No abstract available.

PMID:
31321694
7.

Network-based characterization of drug-protein interaction signatures with a space-efficient approach.

Tabei Y, Kotera M, Sawada R, Yamanishi Y.

BMC Syst Biol. 2019 Apr 5;13(Suppl 2):39. doi: 10.1186/s12918-019-0691-1.

8.

Effect of iron overload from multi walled carbon nanotubes on neutrophil-like differentiated HL-60 cells.

Tabei Y, Fukui H, Nishioka A, Hagiwara Y, Sato K, Yoneda T, Koyama T, Horie M.

Sci Rep. 2019 Feb 18;9(1):2224. doi: 10.1038/s41598-019-38598-4.

9.

Regional characteristics of Lactobacillus plantarum group strains isolated from two kinds of Japanese post-fermented teas, Ishizuchi-kurocha and Awa-bancha.

Horie M, Sato H, Tada A, Nakamura S, Sugino S, Tabei Y, Katoh M, Toyotome T.

Biosci Microbiota Food Health. 2019;38(1):11-22. doi: 10.12938/bmfh.18-005. Epub 2018 Oct 6.

10.

Development of transgenic male-sterile rice by using anther-specific promoters identified by comprehensive screening of the gene expression profile database 'RiceXPro'.

Akasaka M, Taniguchi Y, Oshima M, Abe K, Tabei Y, Tanaka J.

Breed Sci. 2018 Sep;68(4):420-431. doi: 10.1270/jsbbs.18019. Epub 2018 Aug 23.

11.

[I. Cyberknife Stereotactic-Radiotherapy for Gliomas].

Tabei Y, Nomura R, Sato K, Karasawa K, Ichi S.

Gan To Kagaku Ryoho. 2018 Jun;45(6):923-926. Japanese. No abstract available.

PMID:
30026415
12.

Validation of metallothionein, interleukin-8, and heme oxygenase-1 as markers for the evaluation of cytotoxicity caused by metal oxide nanoparticles.

Horie M, Shimizu K, Tabei Y.

Toxicol Mech Methods. 2018 Oct;28(8):630-638. doi: 10.1080/15376516.2018.1486931. Epub 2018 Aug 15.

PMID:
29882686
13.

Development and characterization of transgenic dominant male sterile rice toward an outcross-based breeding system.

Abe K, Oshima M, Akasaka M, Konagaya KI, Nanasato Y, Okuzaki A, Taniguchi Y, Tanaka J, Tabei Y.

Breed Sci. 2018 Mar;68(2):248-257. doi: 10.1270/jsbbs.17090. Epub 2018 Mar 24.

14.

Reactive oxygen species independent genotoxicity of indium tin oxide nanoparticles triggered by intracellular degradation.

Tabei Y, Sugino S, Nakajima Y, Horie M.

Food Chem Toxicol. 2018 Aug;118:264-271. doi: 10.1016/j.fct.2018.05.036. Epub 2018 May 14.

PMID:
29772267
15.

Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures.

Sawada R, Iwata M, Tabei Y, Yamato H, Yamanishi Y.

Sci Rep. 2018 Jan 9;8(1):156. doi: 10.1038/s41598-017-18315-9.

16.

Antioxidant properties of 5-hydroxy-4-phenyl-butenolide via activation of Nrf2/ARE signaling pathway.

Tabei Y, Murotomi K, Umeno A, Horie M, Tsujino Y, Masutani B, Yoshida Y, Nakajima Y.

Food Chem Toxicol. 2017 Sep;107(Pt A):129-137. doi: 10.1016/j.fct.2017.06.039. Epub 2017 Jun 24.

PMID:
28655653
17.

Effect of calcium carbonate particle shape on phagocytosis and pro-inflammatory response in differentiated THP-1 macrophages.

Tabei Y, Sugino S, Eguchi K, Tajika M, Abe H, Nakajima Y, Horie M.

Biochem Biophys Res Commun. 2017 Aug 19;490(2):499-505. doi: 10.1016/j.bbrc.2017.06.069. Epub 2017 Jun 15.

PMID:
28624457
18.

The Non-Mendelian Green Cotyledon Gene in Soybean Encodes a Small Subunit of Photosystem II.

Kohzuma K, Sato Y, Ito H, Okuzaki A, Watanabe M, Kobayashi H, Nakano M, Yamatani H, Masuda Y, Nagashima Y, Fukuoka H, Yamada T, Kanazawa A, Kitamura K, Tabei Y, Ikeuchi M, Sakamoto W, Tanaka A, Kusaba M.

Plant Physiol. 2017 Apr;173(4):2138-2147. doi: 10.1104/pp.16.01589. Epub 2017 Feb 24.

19.

A prospective, multicentre, single-arm clinical trial of bevacizumab for patients with surgically untreatable, symptomatic brain radiation necrosis.

Furuse M, Nonoguchi N, Kuroiwa T, Miyamoto S, Arakawa Y, Shinoda J, Miwa K, Iuchi T, Tsuboi K, Houkin K, Terasaka S, Tabei Y, Nakamura H, Nagane M, Sugiyama K, Terasaki M, Abe T, Narita Y, Saito N, Mukasa A, Ogasawara K, Beppu T, Kumabe T, Nariai T, Tsuyuguchi N, Nakatani E, Kurisu S, Nakagawa Y, Miyatake SI.

Neurooncol Pract. 2016 Dec;3(4):272-280. Epub 2016 Jan 7.

20.

Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction.

Tabei Y, Yamanishi Y, Kotera M.

Bioinformatics. 2016 Jun 15;32(12):i278-i287. doi: 10.1093/bioinformatics/btw260.

21.

Biodegradation of γ-hexachlorocyclohexane by transgenic hairy root cultures of Cucurbita moschata that accumulate recombinant bacterial LinA.

Nanasato Y, Namiki S, Oshima M, Moriuchi R, Konagaya K, Seike N, Otani T, Nagata Y, Tsuda M, Tabei Y.

Plant Cell Rep. 2016 Sep;35(9):1963-74. doi: 10.1007/s00299-016-2011-1. Epub 2016 Jun 13.

PMID:
27295266
22.

Histopathological investigation of glioblastomas resected under bevacizumab treatment.

Tamura R, Tanaka T, Miyake K, Tabei Y, Ohara K, Sampetrean O, Kono M, Mizutani K, Yamamoto Y, Murayama Y, Tamiya T, Yoshida K, Sasaki H.

Oncotarget. 2016 Aug 9;7(32):52423-52435. doi: 10.18632/oncotarget.9387.

23.

Does photocatalytic activity of TiO2 nanoparticles correspond to photo-cytotoxicity? Cellular uptake of TiO2 nanoparticles is important in their photo-cytotoxicity.

Horie M, Sugino S, Kato H, Tabei Y, Nakamura A, Yoshida Y.

Toxicol Mech Methods. 2016 May;26(4):284-94. doi: 10.1080/15376516.2016.1175530. Epub 2016 May 4.

PMID:
27142467
24.

Long-term results of hypofractionated stereotactic radiotherapy with CyberKnife for growth hormone-secreting pituitary adenoma: evaluation by the Cortina consensus.

Iwata H, Sato K, Nomura R, Tabei Y, Suzuki I, Yokota N, Inoue M, Ohta S, Yamada S, Shibamoto Y.

J Neurooncol. 2016 Jun;128(2):267-75. doi: 10.1007/s11060-016-2105-1. Epub 2016 Mar 9.

PMID:
26961771
25.

Involvement of splenic iron accumulation in the development of nonalcoholic steatohepatitis in Tsumura Suzuki Obese Diabetes mice.

Murotomi K, Arai S, Uchida S, Endo S, Mitsuzumi H, Tabei Y, Yoshida Y, Nakajima Y.

Sci Rep. 2016 Mar 2;6:22476. doi: 10.1038/srep22476.

26.

Intracellular accumulation of indium ions released from nanoparticles induces oxidative stress, proinflammatory response and DNA damage.

Tabei Y, Sonoda A, Nakajima Y, Biju V, Makita Y, Yoshida Y, Horie M.

J Biochem. 2016 Feb;159(2):225-37. doi: 10.1093/jb/mvv098. Epub 2015 Sep 15.

27.

Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments.

Yamanishi Y, Tabei Y, Kotera M.

Bioinformatics. 2015 Jun 15;31(12):i161-70. doi: 10.1093/bioinformatics/btv224.

28.

In vitro evaluation of the cellular effect of indium tin oxide nanoparticles using the human lung adenocarcinoma A549 cells.

Tabei Y, Sonoda A, Nakajima Y, Biju V, Makita Y, Yoshida Y, Horie M.

Metallomics. 2015 May;7(5):816-27. doi: 10.1039/c5mt00031a. Epub 2015 Mar 17.

PMID:
25781390
29.

Cucumber (Cucumis sativus L.) and kabocha squash (Cucurbita moschata Duch).

Nanasato Y, Tabei Y.

Methods Mol Biol. 2015;1223:299-310. doi: 10.1007/978-1-4939-1695-5_24.

PMID:
25300850
30.
31.

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

Kotera M, Tabei Y, Yamanishi Y, Muto A, Moriya Y, Tokimatsu T, Goto S.

Bioinformatics. 2014 Jun 15;30(12):i165-74. doi: 10.1093/bioinformatics/btu265.

32.

Inferring protein domains associated with drug side effects based on drug-target interaction network.

Iwata H, Mizutani S, Tabei Y, Kotera M, Goto S, Yamanishi Y.

BMC Syst Biol. 2013;7 Suppl 6:S18. doi: 10.1186/1752-0509-7-S6-S18. Epub 2013 Dec 13.

33.

Scalable prediction of compound-protein interactions using minwise hashing.

Tabei Y, Yamanishi Y.

BMC Syst Biol. 2013;7 Suppl 6:S3. doi: 10.1186/1752-0509-7-S6-S3. Epub 2013 Dec 13.

34.

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.

Kotera M, Tabei Y, Yamanishi Y, Moriya Y, Tokimatsu T, Kanehisa M, Goto S.

BMC Syst Biol. 2013;7 Suppl 6:S2. doi: 10.1186/1752-0509-7-S6-S2. Epub 2013 Dec 13.

35.

Toxicity and outcome of radiotherapy with concomitant and adjuvant temozolomide in elderly patients with glioblastoma: a retrospective study.

Saito K, Mukasa A, Narita Y, Tabei Y, Shinoura N, Shibui S, Saito N.

Neurol Med Chir (Tokyo). 2014;54(4):272-9. Epub 2013 Nov 20.

36.

[Multidisciplinary approach to management of patients with brain metastases].

Tabei Y, Miyamoto S, Suzuki I.

Gan To Kagaku Ryoho. 2013 Oct;40(10):1288-94. Japanese.

PMID:
24105053
37.
38.

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets.

Kotera M, Tabei Y, Yamanishi Y, Tokimatsu T, Goto S.

Bioinformatics. 2013 Jul 1;29(13):i135-44. doi: 10.1093/bioinformatics/btt244.

39.

Epigenetic switching by the metabolism-sensing factors in the generation of orexin neurons from mouse embryonic stem cells.

Hayakawa K, Hirosawa M, Tabei Y, Arai D, Tanaka S, Murakami N, Yagi S, Shiota K.

J Biol Chem. 2013 Jun 14;288(24):17099-110. doi: 10.1074/jbc.M113.455899. Epub 2013 Apr 26.

40.

Breaking restricted taxonomic functionality by dual resistance genes.

Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.

Plant Signal Behav. 2013 Jun;8(6):e24244. doi: 10.4161/psb.24244. Epub 2013 Mar 21.

41.

Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens.

Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.

PLoS One. 2013;8(2):e55954. doi: 10.1371/journal.pone.0055954. Epub 2013 Feb 20.

42.

Persistent C genome chromosome regions identified by SSR analysis in backcross progenies between Brassica juncea and B. napus.

Tsuda M, Okuzaki A, Kaneko Y, Tabei Y.

Breed Sci. 2012 Dec;62(4):328-33. doi: 10.1270/jsbbs.62.328. Epub 2012 Dec 1.

43.

The right dorsal anterior cingulate cortex may play a role in anxiety disorder and visual function.

Shinoura N, Yamada R, Tabei Y, Shiode T, Itoi C, Saito S, Midorikawa A.

Neurol Res. 2013 Jan;35(1):65-70. doi: 10.1179/1743132812Y.0000000101.

PMID:
23317801
44.

Damage to the left ventral, arcuate fasciculus and superior longitudinal fasciculus-related pathways induces deficits in object naming, phonological language function and writing, respectively.

Shinoura N, Midorikawa A, Onodera T, Tsukada M, Yamada R, Tabei Y, Itoi C, Saito S, Yagi K.

Int J Neurosci. 2013 Jul;123(7):494-502. doi: 10.3109/00207454.2013.765420. Epub 2013 Feb 14.

PMID:
23311714
45.
46.

Occurrence of metaxenia and false hybrids in Brassica juncea L. cv. Kikarashina × B. napus.

Tsuda M, Konagaya K, Okuzaki A, Kaneko Y, Tabei Y.

Breed Sci. 2011 Dec;61(4):358-65. doi: 10.1270/jsbbs.61.358. Epub 2011 Dec 15.

47.

Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers.

Tabei Y, Pauwels E, Stoven V, Takemoto K, Yamanishi Y.

Bioinformatics. 2012 Sep 15;28(18):i487-i494. doi: 10.1093/bioinformatics/bts412.

48.

Two regulatory networks mediated by light and glucose involved in glycolytic gene expression in cyanobacteria.

Tabei Y, Okada K, Horii E, Mitsui M, Nagashima Y, Sakai T, Yoshida T, Kamiya A, Fujiwara S, Tsuzuki M.

Plant Cell Physiol. 2012 Oct;53(10):1720-7. doi: 10.1093/pcp/pcs115. Epub 2012 Aug 21.

PMID:
22915573
49.

Selenium cannot substitute for sulfur in cell density-independent bioluminescence in Vibrio fischeri.

Tabei Y, Era M, Ogawa A, Ninomiya J, Kawano T, Morita H.

J Basic Microbiol. 2013 Feb;53(2):175-80. doi: 10.1002/jobm.201100578. Epub 2012 Jun 26.

PMID:
22733648
50.

Influence of cations and anions on the induction of cell density-independent luminescence in Photorhabdus luminescens.

Tabei Y, Ogawa A, Era M, Ninomiya J, Morita H.

J Basic Microbiol. 2013 Mar;53(3):268-76. doi: 10.1002/jobm.201100568. Epub 2012 Jun 26.

PMID:
22733631

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