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Items: 23

1.

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.

Baryawno N, Przybylski D, Kowalczyk MS, Kfoury Y, Severe N, Gustafsson K, Kokkaliaris KD, Mercier F, Tabaka M, Hofree M, Dionne D, Papazian A, Lee D, Ashenberg O, Subramanian A, Vaishnav ED, Rozenblatt-Rosen O, Regev A, Scadden DT.

Cell. 2019 Jun 13;177(7):1915-1932.e16. doi: 10.1016/j.cell.2019.04.040. Epub 2019 May 23.

PMID:
31130381
2.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Schiebinger G, Shu J, Tabaka M, Cleary B, Subramanian V, Solomon A, Gould J, Liu S, Lin S, Berube P, Lee L, Chen J, Brumbaugh J, Rigollet P, Hochedlinger K, Jaenisch R, Regev A, Lander ES.

Cell. 2019 Mar 7;176(6):1517. doi: 10.1016/j.cell.2019.02.026. No abstract available.

3.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Schiebinger G, Shu J, Tabaka M, Cleary B, Subramanian V, Solomon A, Gould J, Liu S, Lin S, Berube P, Lee L, Chen J, Brumbaugh J, Rigollet P, Hochedlinger K, Jaenisch R, Regev A, Lander ES.

Cell. 2019 Feb 7;176(4):928-943.e22. doi: 10.1016/j.cell.2019.01.006. Epub 2019 Jan 31. Erratum in: Cell. 2019 Mar 7;176(6):1517.

PMID:
30712874
4.

Genetic determinants of co-accessible chromatin regions in activated T cells across humans.

Gate RE, Cheng CS, Aiden AP, Siba A, Tabaka M, Lituiev D, Machol I, Gordon MG, Subramaniam M, Shamim M, Hougen KL, Wortman I, Huang SC, Durand NC, Feng T, De Jager PL, Chang HY, Aiden EL, Benoist C, Beer MA, Ye CJ, Regev A.

Nat Genet. 2018 Aug;50(8):1140-1150. doi: 10.1038/s41588-018-0156-2. Epub 2018 Jul 9.

5.

Hill kinetics as a noise filter: the role of transcription factor autoregulation in gene cascades.

Ochab-Marcinek A, Jędrak J, Tabaka M.

Phys Chem Chem Phys. 2017 Aug 23;19(33):22580-22591. doi: 10.1039/c7cp00743d.

PMID:
28809965
6.

Enforcement of developmental lineage specificity by transcription factor Oct1.

Shen Z, Kang J, Shakya A, Tabaka M, Jarboe EA, Regev A, Tantin D.

Elife. 2017 May 24;6. pii: e20937. doi: 10.7554/eLife.20937.

7.

The Hinge Region Strengthens the Nonspecific Interaction between Lac-Repressor and DNA: A Computer Simulation Study.

Sun L, Tabaka M, Hou S, Li L, Burdzy K, Aksimentiev A, Maffeo C, Zhang X, Holyst R.

PLoS One. 2016 Mar 23;11(3):e0152002. doi: 10.1371/journal.pone.0152002. eCollection 2016.

8.

Small Crowders Slow Down Kinesin-1 Stepping by Hindering Motor Domain Diffusion.

Sozański K, Ruhnow F, Wiśniewska A, Tabaka M, Diez S, Hołyst R.

Phys Rev Lett. 2015 Nov 20;115(21):218102. doi: 10.1103/PhysRevLett.115.218102. Epub 2015 Nov 20.

PMID:
26636875
9.

Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data.

Tabaka M, Burdzy K, Hołyst R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022721. Epub 2015 Aug 28.

PMID:
26382446
10.

Motion of nanoprobes in complex liquids within the framework of the length-scale dependent viscosity model.

Kalwarczyk T, Sozanski K, Ochab-Marcinek A, Szymanski J, Tabaka M, Hou S, Holyst R.

Adv Colloid Interface Sci. 2015 Sep;223:55-63. doi: 10.1016/j.cis.2015.06.007. Epub 2015 Jul 10. Review.

PMID:
26189602
11.

Transcriptional leakage versus noise: a simple mechanism of conversion between binary and graded response in autoregulated genes.

Ochab-Marcinek A, Tabaka M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jan;91(1):012704. Epub 2015 Jan 16.

PMID:
25679640
12.

Predictors of infection from dog bite wounds: which patients may benefit from prophylactic antibiotics?

Tabaka ME, Quinn JV, Kohn MA, Polevoi SK.

Emerg Med J. 2015 Nov;32(11):860-3. doi: 10.1136/emermed-2014-204378. Epub 2015 Jan 29.

PMID:
25634096
13.

Quantitative influence of macromolecular crowding on gene regulation kinetics.

Tabaka M, Kalwarczyk T, Hołyst R.

Nucleic Acids Res. 2014 Jan;42(2):727-38. doi: 10.1093/nar/gkt907. Epub 2013 Oct 10.

14.

Taylor dispersion analysis in coiled capillaries at high flow rates.

Lewandrowska A, Majcher A, Ochab-Marcinek A, Tabaka M, Hołyst R.

Anal Chem. 2013 Apr 16;85(8):4051-6. doi: 10.1021/ac4007792. Epub 2013 Mar 29.

PMID:
23496178
15.

Biologistics--diffusion coefficients for complete proteome of Escherichia coli.

Kalwarczyk T, Tabaka M, Holyst R.

Bioinformatics. 2012 Nov 15;28(22):2971-8. doi: 10.1093/bioinformatics/bts537. Epub 2012 Aug 31.

16.

Characterization of Caulobacter crescentus FtsZ protein using dynamic light scattering.

Hou S, Wieczorek SA, Kaminski TS, Ziebacz N, Tabaka M, Sorto NA, Foss MH, Shaw JT, Thanbichler M, Weibel DB, Nieznanski K, Holyst R, Garstecki P.

J Biol Chem. 2012 Jul 6;287(28):23878-86. doi: 10.1074/jbc.M111.309492. Epub 2012 May 9.

17.

Binary and graded evolution in time in a simple model of gene induction.

Tabaka M, Hołyst R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Nov;82(5 Pt 1):052902. Epub 2010 Nov 8.

PMID:
21230531
18.

Bimodal gene expression in noncooperative regulatory systems.

Ochab-Marcinek A, Tabaka M.

Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22096-101. doi: 10.1073/pnas.1008965107. Epub 2010 Dec 6.

19.

Scaling form of viscosity at all length-scales in poly(ethylene glycol) solutions studied by fluorescence correlation spectroscopy and capillary electrophoresis.

Holyst R, Bielejewska A, Szymański J, Wilk A, Patkowski A, Gapiński J, Zywociński A, Kalwarczyk T, Kalwarczyk E, Tabaka M, Ziebacz N, Wieczorek SA.

Phys Chem Chem Phys. 2009 Oct 28;11(40):9025-32. doi: 10.1039/b908386c. Epub 2009 Aug 3.

PMID:
19812821
20.

The evolutionarily conserved RNA binding protein SMOOTH is essential for maintaining normal muscle function.

Draper I, Tabaka ME, Jackson FR, Salomon RN, Kopin AS.

Fly (Austin). 2009 Oct-Dec;3(4):235-46. Epub 2009 Oct 14.

21.

The effects of polyunsaturated fatty acids on coronary disease.

Tabaka M.

JAAPA. 2008 May;21(5):39-40, 42-4. Review. No abstract available.

PMID:
18556888
22.

Accurate genetic switch in Escherichia coli: novel mechanism of regulation by co-repressor.

Tabaka M, Cybulski O, Hołyst R.

J Mol Biol. 2008 Apr 4;377(4):1002-14. doi: 10.1016/j.jmb.2008.01.060. Epub 2008 Jan 31.

PMID:
18313075
23.

Effects of particulate matter from carbenicillin disodium solution on human macrophages in vitro.

Tabaka MS, Bollinger RO, McClain PR, Ottenbreit M.

Am J Hosp Pharm. 1981 Oct;38(10):1503-7.

PMID:
7294046

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