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Items: 4

1.

Three-dimensional organization and dynamics of the genome.

Szalaj P, Plewczynski D.

Cell Biol Toxicol. 2018 Oct;34(5):381-404. doi: 10.1007/s10565-018-9428-y. Epub 2018 Mar 22. Review.

2.

An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization.

Szałaj P, Tang Z, Michalski P, Pietal MJ, Luo OJ, Sadowski M, Li X, Radew K, Ruan Y, Plewczynski D.

Genome Res. 2016 Dec;26(12):1697-1709. Epub 2016 Oct 27.

3.

3D-GNOME: an integrated web service for structural modeling of the 3D genome.

Szalaj P, Michalski PJ, Wróblewski P, Tang Z, Kadlof M, Mazzocco G, Ruan Y, Plewczynski D.

Nucleic Acids Res. 2016 Jul 8;44(W1):W288-93. doi: 10.1093/nar/gkw437. Epub 2016 May 16.

4.

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

Tang Z, Luo OJ, Li X, Zheng M, Zhu JJ, Szalaj P, Trzaskoma P, Magalska A, Wlodarczyk J, Ruszczycki B, Michalski P, Piecuch E, Wang P, Wang D, Tian SZ, Penrad-Mobayed M, Sachs LM, Ruan X, Wei CL, Liu ET, Wilczynski GM, Plewczynski D, Li G, Ruan Y.

Cell. 2015 Dec 17;163(7):1611-27. doi: 10.1016/j.cell.2015.11.024. Epub 2015 Dec 10.

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