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Items: 25

1.

A 5-enolpyruvylshikimate 3-phosphate synthase functions as a transcriptional repressor in Populus.

Xie M, Muchero W, Bryan AC, Yee KL, Guo HB, Zhang J, Tschaplinski T, Singan VR, Lindquist E, Payyavula RS, Barros-Rios J, Dixon RA, Engle N, Sykes RW, Davis M, Jawdy S, Gunter LE, Thompson O, DiFazio SP, Evans LM, Winkler K, Collins C, Schmutz J, Guo H, Kalluri U, Rodriguez M, Feng K, Chen JG, Tuskan GA.

Plant Cell. 2018 Jun 11. pii: tpc.00168.2018. doi: 10.1105/tpc.18.00168. [Epub ahead of print]

2.

Switchgrass (Panicum virgatum L.) promoters for green tissue-specific expression of the MYB4 transcription factor for reduced-recalcitrance transgenic switchgrass.

Liu W, Mazarei M, Ye R, Peng Y, Shao Y, Baxter HL, Sykes RW, Turner GB, Davis MF, Wang ZY, Dixon RA, Stewart CN Jr.

Biotechnol Biofuels. 2018 Apr 24;11:122. doi: 10.1186/s13068-018-1119-7. eCollection 2018.

3.

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

Biswal AK, Atmodjo MA, Li M, Baxter HL, Yoo CG, Pu Y, Lee YC, Mazarei M, Black IM, Zhang JY, Ramanna H, Bray AL, King ZR, LaFayette PR, Pattathil S, Donohoe BS, Mohanty SS, Ryno D, Yee K, Thompson OA, Rodriguez M Jr, Dumitrache A, Natzke J, Winkeler K, Collins C, Yang X, Tan L, Sykes RW, Gjersing EL, Ziebell A, Turner GB, Decker SR, Hahn MG, Davison BH, Udvardi MK, Mielenz JR, Davis MF, Nelson RS, Parrott WA, Ragauskas AJ, Neal Stewart C Jr, Mohnen D.

Nat Biotechnol. 2018 Mar;36(3):249-257. doi: 10.1038/nbt.4067. Epub 2018 Feb 12.

PMID:
29431741
4.

Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus.

Biswal AK, Atmodjo MA, Pattathil S, Amos RA, Yang X, Winkeler K, Collins C, Mohanty SS, Ryno D, Tan L, Gelineo-Albersheim I, Hunt K, Sykes RW, Turner GB, Ziebell A, Davis MF, Decker SR, Hahn MG, Mohnen D.

Biotechnol Biofuels. 2018 Jan 17;11:9. doi: 10.1186/s13068-017-1002-y. eCollection 2018.

5.

Field-grown miR156 transgenic switchgrass reproduction, yield, global gene expression analysis, and bioconfinement.

Johnson CR, Millwood RJ, Tang Y, Gou J, Sykes RW, Turner GB, Davis MF, Sang Y, Wang ZY, Stewart CN Jr.

Biotechnol Biofuels. 2017 Nov 30;10:255. doi: 10.1186/s13068-017-0939-1. eCollection 2017.

6.

The TcEG1 beetle (Tribolium castaneum) cellulase produced in transgenic switchgrass is active at alkaline pH and auto-hydrolyzes biomass for increased cellobiose release.

Willis JD, Grant JN, Mazarei M, Kline LM, Rempe CS, Collins AG, Turner GB, Decker SR, Sykes RW, Davis MF, Labbe N, Jurat-Fuentes JL, Stewart CN Jr.

Biotechnol Biofuels. 2017 Nov 30;10:230. doi: 10.1186/s13068-017-0918-6. eCollection 2017.

7.

Adsorption of cellobiohydrolases I onto lignin fractions from dilute acid pretreated Broussonetia papyrifera.

Yao L, Yang H, Yoo CG, Meng X, Li M, Pu Y, Ragauskas AJ, Sykes RW.

Bioresour Technol. 2017 Nov;244(Pt 1):957-962. doi: 10.1016/j.biortech.2017.08.024. Epub 2017 Aug 8.

PMID:
28847086
8.

Transgenic miR156 switchgrass in the field: growth, recalcitrance and rust susceptibility.

Baxter HL, Mazarei M, Dumitrache A, Natzke JM, Rodriguez M Jr, Gou J, Fu C, Sykes RW, Turner GB, Davis MF, Brown SD, Davison BH, Wang ZY, Stewart CN Jr.

Plant Biotechnol J. 2018 Jan;16(1):39-49. doi: 10.1111/pbi.12747. Epub 2017 Jun 20.

9.

Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass.

Li M, Pu Y, Yoo CG, Gjersing E, Decker SR, Doeppke C, Shollenberger T, Tschaplinski TJ, Engle NL, Sykes RW, Davis MF, Baxter HL, Mazarei M, Fu C, Dixon RA, Wang ZY, Neal Stewart C Jr, Ragauskas AJ.

Biotechnol Biofuels. 2017 Jan 3;10:12. doi: 10.1186/s13068-016-0695-7. eCollection 2017.

10.

Downregulation of a UDP-Arabinomutase Gene in Switchgrass (Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-Glycans.

Willis JD, Smith JA, Mazarei M, Zhang JY, Turner GB, Decker SR, Sykes RW, Poovaiah CR, Baxter HL, Mann DG, Davis MF, Udvardi MK, Peña MJ, Backe J, Bar-Peled M, Stewart CN Jr.

Front Plant Sci. 2016 Oct 27;7:1580. eCollection 2016.

11.

Down-Regulation of KORRIGAN-Like Endo-β-1,4-Glucanase Genes Impacts Carbon Partitioning, Mycorrhizal Colonization and Biomass Production in Populus.

Kalluri UC, Payyavula RS, Labbé JL, Engle N, Bali G, Jawdy SS, Sykes RW, Davis M, Ragauskas A, Tuskan GA, Tschaplinski TJ.

Front Plant Sci. 2016 Oct 4;7:1455. eCollection 2016.

12.

Identification and Overexpression of a Knotted1-Like Transcription Factor in Switchgrass (Panicum virgatum L.) for Lignocellulosic Feedstock Improvement.

Wuddineh WA, Mazarei M, Zhang JY, Turner GB, Sykes RW, Decker SR, Davis MF, Udvardi MK, Stewart CN Jr.

Front Plant Sci. 2016 Apr 28;7:520. doi: 10.3389/fpls.2016.00520. eCollection 2016.

13.

Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure.

Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD.

Biotechnol Biofuels. 2016 Feb 4;9:31. doi: 10.1186/s13068-016-0445-x. eCollection 2016.

14.

High-throughput Screening of Recalcitrance Variations in Lignocellulosic Biomass: Total Lignin, Lignin Monomers, and Enzymatic Sugar Release.

Decker SR, Sykes RW, Turner GB, Lupoi JS, Doepkke C, Tucker MP, Schuster LA, Mazza K, Himmel ME, Davis MF, Gjersing E.

J Vis Exp. 2015 Sep 15;(103). doi: 10.3791/53163.

15.

Down-regulation of p-coumaroyl quinate/shikimate 3'-hydroxylase (C3'H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release.

Sykes RW, Gjersing EL, Foutz K, Rottmann WH, Kuhn SA, Foster CE, Ziebell A, Turner GB, Decker SR, Hinchee MA, Davis MF.

Biotechnol Biofuels. 2015 Aug 27;8:128. doi: 10.1186/s13068-015-0316-x. eCollection 2015.

16.

Identification and Molecular Characterization of the Switchgrass AP2/ERF Transcription Factor Superfamily, and Overexpression of PvERF001 for Improvement of Biomass Characteristics for Biofuel.

Wuddineh WA, Mazarei M, Turner GB, Sykes RW, Decker SR, Davis MF, Stewart CN Jr.

Front Bioeng Biotechnol. 2015 Jul 20;3:101. doi: 10.3389/fbioe.2015.00101. eCollection 2015.

17.

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock.

Biswal AK, Hao Z, Pattathil S, Yang X, Winkeler K, Collins C, Mohanty SS, Richardson EA, Gelineo-Albersheim I, Hunt K, Ryno D, Sykes RW, Turner GB, Ziebell A, Gjersing E, Lukowitz W, Davis MF, Decker SR, Hahn MG, Mohnen D.

Biotechnol Biofuels. 2015 Mar 12;8:41. doi: 10.1186/s13068-015-0218-y. eCollection 2015.

18.

Identification and overexpression of gibberellin 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance.

Wuddineh WA, Mazarei M, Zhang J, Poovaiah CR, Mann DG, Ziebell A, Sykes RW, Davis MF, Udvardi MK, Stewart CN Jr.

Plant Biotechnol J. 2015 Jun;13(5):636-47. doi: 10.1111/pbi.12287. Epub 2014 Nov 14.

19.

Transgenic switchgrass (Panicum virgatum L.) biomass is increased by overexpression of switchgrass sucrose synthase (PvSUS1).

Poovaiah CR, Mazarei M, Decker SR, Turner GB, Sykes RW, Davis MF, Stewart CN Jr.

Biotechnol J. 2015 Apr;10(4):552-63. doi: 10.1002/biot.201400499. Epub 2014 Nov 14.

PMID:
25327983
20.

Metabolic profiling reveals altered sugar and secondary metabolism in response to UGPase overexpression in Populus.

Payyavula RS, Tschaplinski TJ, Jawdy SS, Sykes RW, Tuskan GA, Kalluri UC.

BMC Plant Biol. 2014 Oct 7;14:265. doi: 10.1186/s12870-014-0265-8.

21.

Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population.

Penning BW, Sykes RW, Babcock NC, Dugard CK, Held MA, Klimek JF, Shreve JT, Fowler M, Ziebell A, Davis MF, Decker SR, Turner GB, Mosier NS, Springer NM, Thimmapuram J, Weil CF, McCann MC, Carpita NC.

Plant Physiol. 2014 Aug;165(4):1475-1487. Epub 2014 Jun 27.

22.

Two-year field analysis of reduced recalcitrance transgenic switchgrass.

Baxter HL, Mazarei M, Labbe N, Kline LM, Cheng Q, Windham MT, Mann DG, Fu C, Ziebell A, Sykes RW, Rodriguez M Jr, Davis MF, Mielenz JR, Dixon RA, Wang ZY, Stewart CN Jr.

Plant Biotechnol J. 2014 Sep;12(7):914-24. doi: 10.1111/pbi.12195. Epub 2014 Apr 21.

23.

Rapid determination of sugar content in biomass hydrolysates using nuclear magnetic resonance spectroscopy.

Gjersing E, Happs RM, Sykes RW, Doeppke C, Davis MF.

Biotechnol Bioeng. 2013 Mar;110(3):721-8. doi: 10.1002/bit.24741. Epub 2012 Oct 18.

PMID:
23042514
24.

Lignin content in natural Populus variants affects sugar release.

Studer MH, DeMartini JD, Davis MF, Sykes RW, Davison B, Keller M, Tuskan GA, Wyman CE.

Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6300-5. doi: 10.1073/pnas.1009252108. Epub 2011 Mar 28.

25.

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom.

Xu Z, Zhang D, Hu J, Zhou X, Ye X, Reichel KL, Stewart NR, Syrenne RD, Yang X, Gao P, Shi W, Doeppke C, Sykes RW, Burris JN, Bozell JJ, Cheng MZ, Hayes DG, Labbe N, Davis M, Stewart CN Jr, Yuan JS.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S3. doi: 10.1186/1471-2105-10-S11-S3.

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