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Items: 1 to 50 of 200

1.

A general framework for genome rearrangement with biological constraints.

Simonaitis P, Chateau A, Swenson KM.

Algorithms Mol Biol. 2019 Jul 19;14:15. doi: 10.1186/s13015-019-0149-4. eCollection 2019.

2.

A Faster Algorithm for Computing the Kernel of Maximum Agreement Subtrees.

Wang BF, Swenson KM.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Jun 14. doi: 10.1109/TCBB.2019.2922955. [Epub ahead of print]

PMID:
31217125
3.

Rapid alignment-free phylogenetic identification of metagenomic sequences.

Linard B, Swenson K, Pardi F.

Bioinformatics. 2019 Jan 29. doi: 10.1093/bioinformatics/btz068. [Epub ahead of print]

PMID:
30698645
4.

Predictive value of breast magnetic resonance imaging in detecting mammographically occult contralateral breast cancer: Can we target women more likely to have contralateral breast cancer?

Susnik B, Schneider L, Swenson KK, Krueger J, Braatz C, Lillemoe T, Tsai M, DeFor TE, Knaack M, Rueth N.

J Surg Oncol. 2018 Jul;118(1):221-227. doi: 10.1002/jso.25130. Epub 2018 Sep 9.

PMID:
30196538
5.

Finding local genome rearrangements.

Simonaitis P, Swenson KM.

Algorithms Mol Biol. 2018 May 4;13:9. doi: 10.1186/s13015-018-0127-2. eCollection 2018.

6.

Clinicopathologic analysis of a large series of microinvasive breast cancers.

Lillemoe TJ, Tsai ML, Swenson KK, Susnik B, Krueger J, Harris K, Rueth N, Grimm E, Leach JW.

Breast J. 2018 Jul;24(4):574-579. doi: 10.1111/tbj.13001. Epub 2018 Feb 24.

PMID:
29476574
7.

Safety of bolus-dose phenylephrine for hypotensive emergency department patients.

Swenson K, Rankin S, Daconti L, Villarreal T, Langsjoen J, Braude D.

Am J Emerg Med. 2018 Oct;36(10):1802-1806. doi: 10.1016/j.ajem.2018.01.095. Epub 2018 Feb 19.

PMID:
29472039
8.

A Randomized Controlled Trial of Green Tea Extract Supplementation and Mammographic Density in Postmenopausal Women at Increased Risk of Breast Cancer.

Samavat H, Ursin G, Emory TH, Lee E, Wang R, Torkelson CJ, Dostal AM, Swenson K, Le CT, Yang CS, Yu MC, Yee D, Wu AH, Yuan JM, Kurzer MS.

Cancer Prev Res (Phila). 2017 Dec;10(12):710-718. doi: 10.1158/1940-6207.CAPR-17-0187. Epub 2017 Sep 13.

9.

Acetazolamide and N-acetylcysteine in the treatment of chronic mountain sickness (Monge's disease).

Sharma S, Gralla J, Ordonez JG, Hurtado ME, Swenson ER, Schoene RB, Kelly JP, Callacondo D, Rivard C, Roncal-Jimenez C, Sirota J, Fuquay R, Jackson BP, Swenson KE, Johnson RJ, Hurtado A, Escudero E.

Respir Physiol Neurobiol. 2017 Dec;246:1-8. doi: 10.1016/j.resp.2017.07.005. Epub 2017 Jul 15.

PMID:
28720395
10.

Pathologic Predictors of Treatment Response to Neo-adjuvant Chemotherapy for Invasive Lobular Breast Carcinoma.

Tsai M, Finkelstein M, Lillemoe T, Susnik B, Grimm E, Kang SH, Kelly C, Swenson K.

Breast J. 2017 Sep;23(5):607-609. doi: 10.1111/tbj.12809. Epub 2017 Mar 22. No abstract available.

PMID:
28328042
11.

Assisted transcriptome reconstruction and splicing orthology.

Blanquart S, Varré JS, Guertin P, Perrin A, Bergeron A, Swenson KM.

BMC Genomics. 2016 Nov 11;17(Suppl 10):786. doi: 10.1186/s12864-016-3103-6.

12.

Evaluation of a novel 5-group classification system of sepsis by vasopressor use and initial serum lactate in the emergency department.

Swenson KE, Dziura JD, Aydin A, Reynolds J, Wira CR 3rd.

Intern Emerg Med. 2018 Mar;13(2):257-268. doi: 10.1007/s11739-017-1607-y. Epub 2017 Jan 28.

PMID:
28132131
13.

Why Is Cancer Genetic Counseling Underutilized by Women Identified as at Risk for Hereditary Breast Cancer? Patient Perceptions of Barriers Following a Referral Letter.

Kne A, Zierhut H, Baldinger S, Swenson KK, Mink P, Veach PM, Tsai ML.

J Genet Couns. 2017 Aug;26(4):697-715. doi: 10.1007/s10897-016-0040-0. Epub 2016 Nov 8.

PMID:
27826805
14.

Weekly vinorelbine and paclitaxel in older patients with advanced non-small cell lung cancer: A phase II Fred and Pamela Buffet Cancer Center Clinical Trials Network study.

Huerter MM, Meza JL, Copur MS, Tolentino A, Marr AS, Ketcham M, DeSpiegelaere H, Kruse S, Kos ME, Swenson K, Radniecki SE, Kessinger A, Ganti AK.

J Geriatr Oncol. 2017 Jan;8(1):18-22. doi: 10.1016/j.jgo.2016.07.006. Epub 2016 Aug 1.

PMID:
27491498
15.

Composition of the Sepsis Definitions Task Force.

Wira CR 3rd, Swenson KE.

JAMA. 2016 Jul 26;316(4):460. doi: 10.1001/jama.2016.6371. No abstract available.

PMID:
27458964
16.

Surgical Outcomes of Lobular Neoplasia Diagnosed in Core Biopsy: Prospective Study of 316 Cases.

Susnik B, Day D, Abeln E, Bowman T, Krueger J, Swenson KK, Tsai ML, Bretzke ML, Lillemoe TJ.

Clin Breast Cancer. 2016 Dec;16(6):507-513. doi: 10.1016/j.clbc.2016.06.003. Epub 2016 Jun 14.

PMID:
27425222
17.

Models and algorithms for genome rearrangement with positional constraints.

Swenson KM, Simonaitis P, Blanchette M.

Algorithms Mol Biol. 2016 May 17;11:13. doi: 10.1186/s13015-016-0065-9. eCollection 2016.

18.

Discrepancies in measuring acetabular coverage: revisiting the anterior and lateral center edge angles.

Hanson JA, Kapron AL, Swenson KM, Maak TG, Peters CL, Aoki SK.

J Hip Preserv Surg. 2015 Jun 13;2(3):280-6. doi: 10.1093/jhps/hnv041. eCollection 2015 Oct.

19.

Lactate Clearance Predicts Survival Among Patients in the Emergency Department with Severe Sepsis.

Bhat SR, Swenson KE, Francis MW, Wira CR.

West J Emerg Med. 2015 Dec;16(7):1118-26. doi: 10.5811/westjem.2015.10.27577. Epub 2015 Dec 8.

20.

Aligning the unalignable: bacteriophage whole genome alignments.

Bérard S, Chateau A, Pompidor N, Guertin P, Bergeron A, Swenson KM.

BMC Bioinformatics. 2016 Jan 13;17:30. doi: 10.1186/s12859-015-0869-5.

21.

Serum Markers of Bone Turnover and Angiogenesis in Patients With Bisphosphonate-Related Osteonecrosis of the Jaw After Discontinuation of Long-Term Intravenous Bisphosphonate Therapy.

Thumbigere-Math V, Michalowicz BS, Hughes PJ, Basi DL, Tsai ML, Swenson KK, Rockwell L, Gopalakrishnan R.

J Oral Maxillofac Surg. 2016 Apr;74(4):738-46. doi: 10.1016/j.joms.2015.09.028. Epub 2015 Oct 3.

22.

Utility of Oncotype DX Risk Assessment in Patients With Invasive Lobular Carcinoma.

Tsai ML, Lillemoe TJ, Finkelstein MJ, Money JE, Susnik B, Grimm E, Kang SH, Swenson KK.

Clin Breast Cancer. 2016 Feb;16(1):45-50. doi: 10.1016/j.clbc.2015.08.001. Epub 2015 Aug 19.

PMID:
26385397
23.

Hip pain in young adults: diagnosing femoroacetabular impingement.

Swenson KM, Erickson J, Peters C, Aoki SK.

JAAPA. 2015 Sep;28(9):39-45. doi: 10.1097/01.JAA.0000470976.08461.91. Review.

PMID:
26302323
24.

Goal-Directed Therapy for Sepsis: Has the Beast Been Slain or Do Questions Remain?

Wira CR 3rd, Swenson K.

Conn Med. 2015 Feb;79(2):97-9.

PMID:
26244208
25.

Cause of an Elevated Lactate Level.

Swenson KE, Wira CR.

JAMA. 2015 Jun 16;313(23):2381. doi: 10.1001/jama.2015.5043. No abstract available.

PMID:
26080348
26.

The safety of green tea extract supplementation in postmenopausal women at risk for breast cancer: results of the Minnesota Green Tea Trial.

Dostal AM, Samavat H, Bedell S, Torkelson C, Wang R, Swenson K, Le C, Wu AH, Ursin G, Yuan JM, Kurzer MS.

Food Chem Toxicol. 2015 Sep;83:26-35. doi: 10.1016/j.fct.2015.05.019. Epub 2015 Jun 5.

27.

Effect of EDTA preparations on rotary root canal instrumentation.

Whitbeck ER, Swenson K, Tordik PA, Kondor SA, Webb TD, Sun J.

J Endod. 2015 Jan;41(1):92-6. doi: 10.1016/j.joen.2014.07.023. Epub 2014 Sep 1.

PMID:
25190604
28.

Herpes simplex virus-related oral mucositis in patients with lymphoma.

Guerrero MD, Swenson KK.

Oncol Nurs Forum. 2014 May;41(3):327-30. doi: 10.1188/14.ONF.327-330.

PMID:
24769598
29.

Reconstructing the modular recombination history of Staphylococcus aureus phages.

Swenson KM, Guertin P, Deschênes H, Bergeron A.

BMC Bioinformatics. 2013;14 Suppl 15:S17. doi: 10.1186/1471-2105-14-S15-S17. Epub 2013 Oct 15.

30.

Gene tree correction guided by orthology.

Lafond M, Semeria M, Swenson KM, Tannier E, El-Mabrouk N.

BMC Bioinformatics. 2013;14 Suppl 15:S5. doi: 10.1186/1471-2105-14-S15-S5. Epub 2013 Oct 15.

31.

Coping processes among bereaved spouses.

Caserta M, Utz R, Lund D, Swenson KL, de Vries B.

Death Stud. 2014 Jan-Jun;38(1-5):145-55. doi: 10.1080/07481187.2012.738767. Epub 2013 Aug 22.

32.

Mindblindness: metaphor and neuroaesthetics in the works of Silas Weir Mitchell and Simon Baron-Cohen.

Swenson K.

Prog Brain Res. 2013;205:295-318. doi: 10.1016/B978-0-444-63273-9.00015-0.

PMID:
24290271
33.

Salivary proteomics in bisphosphonate-related osteonecrosis of the jaw.

Thumbigere-Math V, Michalowicz BS, de Jong EP, Griffin TJ, Basi DL, Hughes PJ, Tsai ML, Swenson KK, Rockwell L, Gopalakrishnan R.

Oral Dis. 2015 Jan;21(1):46-56. doi: 10.1111/odi.12204. Epub 2013 Nov 29.

34.

Identification of tools to measure changes in musculoskeletal symptoms and physical functioning in women with breast cancer receiving aromatase inhibitors.

Swenson KK, Nissen MJ, Henly SJ, Maybon L, Pupkes J, Zwicky K, Tsai ML, Shapiro AC.

Oncol Nurs Forum. 2013 Nov;40(6):549-57. doi: 10.1188/13.ONF.549-557.

PMID:
24161633
35.

Feeling lonely versus being alone: loneliness and social support among recently bereaved persons.

Utz RL, Swenson KL, Caserta M, Lund D, deVries B.

J Gerontol B Psychol Sci Soc Sci. 2014 Jan;69(1):85-94. doi: 10.1093/geronb/gbt075. Epub 2013 Sep 21.

36.

Periodontal disease as a risk factor for bisphosphonate-related osteonecrosis of the jaw.

Thumbigere-Math V, Michalowicz BS, Hodges JS, Tsai ML, Swenson KK, Rockwell L, Gopalakrishnan R.

J Periodontol. 2014 Feb;85(2):226-33. doi: 10.1902/jop.2013.130017. Epub 2013 Jun 20.

37.

Ancestral genome organization: an alignment approach.

Holloway P, Swenson K, Ardell D, El-Mabrouk N.

J Comput Biol. 2013 Apr;20(4):280-95. doi: 10.1089/cmb.2012.0292.

PMID:
23560866
38.

Cancer rehabilitation: outcome evaluation of a strengthening and conditioning program.

Swenson KK, Nissen MJ, Knippenberg K, Sistermans A, Spilde P, Bell EM, Nissen J, Chen C, Tsai ML.

Cancer Nurs. 2014 May-Jun;37(3):162-9. doi: 10.1097/NCC.0b013e318288d429.

PMID:
23519042
39.

Effectiveness of treatment summaries in increasing breast and colorectal cancer survivors' knowledge about their diagnosis and treatment.

Nissen MJ, Tsai ML, Blaes AH, Swenson KK, Koering S.

J Cancer Surviv. 2013 Jun;7(2):211-8. doi: 10.1007/s11764-012-0261-7. Epub 2013 Feb 17.

PMID:
23417167
40.

Adjuvant therapy with zoledronic acid in patients with breast cancer: a systematic review and meta-analysis.

Valachis A, Polyzos NP, Coleman RE, Gnant M, Eidtmann H, Brufsky AM, Aft R, Tevaarwerk AJ, Swenson K, Lind P, Mauri D.

Oncologist. 2013;18(4):353-61. doi: 10.1634/theoncologist.2012-0261. Epub 2013 Feb 12.

41.

A graph-theoretic approach for inparalog detection.

Tremblay-Savard O, Swenson KM.

BMC Bioinformatics. 2012;13 Suppl 19:S16. doi: 10.1186/1471-2105-13-S19-S16. Epub 2012 Dec 19.

42.

Gene trees and species trees: irreconcilable differences.

Swenson KM, El-Mabrouk N.

BMC Bioinformatics. 2012;13 Suppl 19:S15. doi: 10.1186/1471-2105-13-S19-S15. Epub 2012 Dec 19.

43.

Nail toxicity associated with paclitaxel treatment for ovarian cancer.

Swenson KK, Bell EM, Nissen J.

Oncol Nurs Forum. 2013 Jan;40(1):17-9. doi: 10.1188/13.ONF.17-19. No abstract available.

PMID:
23269765
44.

Gene tree correction for reconciliation and species tree inference.

Swenson KM, Doroftei A, El-Mabrouk N.

Algorithms Mol Biol. 2012 Nov 20;7(1):31. doi: 10.1186/1748-7188-7-31.

45.

"Embryo glue" does not seem to improve chances of subsequent pregnancy in refractory in vitro fertilization cases.

Check JH, Summers-Chase D, Yuan W, Swenson K, Horwath D, Press M.

Clin Exp Obstet Gynecol. 2012;39(1):11-2.

PMID:
22675945
46.

Radon testing and mitigation: an intervention in a primary care setting.

Nissen MJ, Leach JW, Nissen JA, Swenson KK, Kehn H.

J Cancer Educ. 2012 Jun;27(3):566-72. doi: 10.1007/s13187-012-0346-z.

PMID:
22467225
47.

Lichen sclerosus: a 5-year follow-up after topical, subdermal, or combined therapy.

Ventolini G, Swenson KM, Galloway ML.

J Low Genit Tract Dis. 2012 Jul;16(3):271-4. doi: 10.1097/LGT.0b013e31823da7e8.

PMID:
22258061
48.

The Kernel of Maximum Agreement Subtrees.

Swenson KM, Chen E, Pattengale ND, Sankoff D.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1023-31. doi: 10.1109/TCBB.2012.11.

PMID:
22231622
49.

Effect of method of oocyte fertilization on fertilization, pregnancy and implantation rates in women with unexplained infertility.

Check JH, Yuan W, Garberi-Levito MC, Swenson K, McMonagle K.

Clin Exp Obstet Gynecol. 2011;38(3):203-5.

PMID:
21995144
50.

Theory and practice of ultra-perfection.

Ouangraoua A, Bergeron A, Swenson KM.

J Comput Biol. 2011 Sep;18(9):1219-30. doi: 10.1089/cmb.2011.0086.

PMID:
21899427

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