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Items: 1 to 50 of 97

1.

A call for public archives for biological image data.

Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Patwardhan A, Brazma A, Birney E.

Nat Methods. 2018 Nov;15(11):849-854. doi: 10.1038/s41592-018-0195-8. No abstract available.

PMID:
30377375
2.

Publisher Correction: Image Data Resource: a bioimage data integration and publication platform.

Williams E, Moore J, Li SW, Rustici G, Tarkowska A, Chessel A, Leo S, Antal B, Ferguson RK, Sarkans U, Brazma A, Carazo Salas RE, Swedlow JR.

Nat Methods. 2018 Nov;15(11):984. doi: 10.1038/s41592-018-0169-x.

PMID:
30287931
3.

Killing with proficiency: Integrated post-translational regulation of an offensive Type VI secretion system.

Ostrowski A, Cianfanelli FR, Porter M, Mariano G, Peltier J, Wong JJ, Swedlow JR, Trost M, Coulthurst SJ.

PLoS Pathog. 2018 Jul 27;14(7):e1007230. doi: 10.1371/journal.ppat.1007230. eCollection 2018 Jul.

4.

The Ndc80 complex targets Bod1 to human mitotic kinetochores.

Schleicher K, Porter M, Ten Have S, Sundaramoorthy R, Porter IM, Swedlow JR.

Open Biol. 2017 Nov;7(11). pii: 170099. doi: 10.1098/rsob.170099.

5.

The Image Data Resource: A Bioimage Data Integration and Publication Platform.

Williams E, Moore J, Li SW, Rustici G, Tarkowska A, Chessel A, Leo S, Antal B, Ferguson RK, Sarkans U, Brazma A, Salas REC, Swedlow JR.

Nat Methods. 2017 Aug;14(8):775-781. doi: 10.1038/nmeth.4326. Epub 2017 Jun 19. Erratum in: Nat Methods. 2018 Nov;15(11):984.

6.

Building bridges between cellular and molecular structural biology.

Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin A, Jones ML, Korir PK, Koster AJ, Lagerstedt I, Lawson CL, Mastronarde D, McCormick M, Parkinson H, Rosenthal PB, Saalfeld S, Saibil HR, Sarntivijai S, Solanes Valero I, Subramaniam S, Swedlow JR, Tudose I, Winn M, Kleywegt GJ.

Elife. 2017 Jul 6;6. pii: e25835. doi: 10.7554/eLife.25835.

7.

BOD1 Is Required for Cognitive Function in Humans and Drosophila.

Esmaeeli-Nieh S, Fenckova M, Porter IM, Motazacker MM, Nijhof B, Castells-Nobau A, Asztalos Z, Weißmann R, Behjati F, Tzschach A, Felbor U, Scherthan H, Sayfati SM, Ropers HH, Kahrizi K, Najmabadi H, Swedlow JR, Schenck A, Kuss AW.

PLoS Genet. 2016 May 11;12(5):e1006022. doi: 10.1371/journal.pgen.1006022. eCollection 2016 May.

8.

Ubiquitin Receptor Protein UBASH3B Drives Aurora B Recruitment to Mitotic Microtubules.

Krupina K, Kleiss C, Metzger T, Fournane S, Schmucker S, Hofmann K, Fischer B, Paul N, Porter IM, Raffelsberger W, Poch O, Swedlow JR, Brino L, Sumara I.

Dev Cell. 2016 Jan 11;36(1):63-78. doi: 10.1016/j.devcel.2015.12.017.

9.

CDK-dependent phosphorylation of PHD1 on serine 130 alters its substrate preference in cells.

Ortmann B, Bensaddek D, Carvalhal S, Moser SC, Mudie S, Griffis ER, Swedlow JR, Lamond AI, Rocha S.

J Cell Sci. 2016 Jan 1;129(1):191-205. doi: 10.1242/jcs.179911. Epub 2015 Dec 7.

10.

Metadata management for high content screening in OMERO.

Li S, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Rustici G, Tarkowska A, Walczysko P, Williams E, Allan C, Burel JM, Moore J, Swedlow JR.

Methods. 2016 Mar 1;96:27-32. doi: 10.1016/j.ymeth.2015.10.006. Epub 2015 Oct 22.

11.

Publishing and sharing multi-dimensional image data with OMERO.

Burel JM, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Li S, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Tarkowska A, Walczysko P, Allan C, Moore J, Swedlow JR.

Mamm Genome. 2015 Oct;26(9-10):441-7. doi: 10.1007/s00335-015-9587-6. Epub 2015 Jul 30.

12.

A 3D cellular context for the macromolecular world.

Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ.

Nat Struct Mol Biol. 2014 Oct;21(10):841-5. doi: 10.1038/nsmb.2897. No abstract available.

13.

Analysis of global RNA synthesis at the single cell level following hypoxia.

Biddlestone J, Druker J, Shmakova A, Ferguson G, Swedlow JR, Rocha S.

J Vis Exp. 2014 May 13;(87). doi: 10.3791/51420.

14.

Bod1 regulates protein phosphatase 2A at mitotic kinetochores.

Porter IM, Schleicher K, Porter M, Swedlow JR.

Nat Commun. 2013;4:2677. doi: 10.1038/ncomms3677.

15.

Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm.

Marlow VL, Porter M, Hobley L, Kiley TB, Swedlow JR, Davidson FA, Stanley-Wall NR.

J Bacteriol. 2014 Jan;196(1):16-27. doi: 10.1128/JB.00930-13. Epub 2013 Oct 11.

16.

Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB.

Lagerstedt I, Moore WJ, Patwardhan A, Sanz-García E, Best C, Swedlow JR, Kleywegt GJ.

J Struct Biol. 2013 Nov;184(2):173-81. doi: 10.1016/j.jsb.2013.09.021. Epub 2013 Oct 7.

17.

At the (kineto)chore, yeast really are like people.

Swedlow JR.

Cell. 2013 Aug 29;154(5):959-961. doi: 10.1016/j.cell.2013.08.012.

18.

PHD1 links cell-cycle progression to oxygen sensing through hydroxylation of the centrosomal protein Cep192.

Moser SC, Bensaddek D, Ortmann B, Maure JF, Mudie S, Blow JJ, Lamond AI, Swedlow JR, Rocha S.

Dev Cell. 2013 Aug 26;26(4):381-92. doi: 10.1016/j.devcel.2013.06.014. Epub 2013 Aug 8.

19.

Quantitative fluorescence microscopy and image deconvolution.

Swedlow JR.

Methods Cell Biol. 2013;114:407-26. doi: 10.1016/B978-0-12-407761-4.00017-8.

PMID:
23931516
20.

Quantitative analysis of digital microscope images.

Wolf DE, Samarasekera C, Swedlow JR.

Methods Cell Biol. 2013;114:337-67. doi: 10.1016/B978-0-12-407761-4.00014-2.

PMID:
23931513
21.

Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant.

Earnshaw WC, Allshire RC, Black BE, Bloom K, Brinkley BR, Brown W, Cheeseman IM, Choo KH, Copenhaver GP, Deluca JG, Desai A, Diekmann S, Erhardt S, Fitzgerald-Hayes M, Foltz D, Fukagawa T, Gassmann R, Gerlich DW, Glover DM, Gorbsky GJ, Harrison SC, Heun P, Hirota T, Jansen LE, Karpen G, Kops GJ, Lampson MA, Lens SM, Losada A, Luger K, Maiato H, Maddox PS, Margolis RL, Masumoto H, McAinsh AD, Mellone BG, Meraldi P, Musacchio A, Oegema K, O'Neill RJ, Salmon ED, Scott KC, Straight AF, Stukenberg PT, Sullivan BA, Sullivan KF, Sunkel CE, Swedlow JR, Walczak CE, Warburton PE, Westermann S, Willard HF, Wordeman L, Yanagida M, Yen TJ, Yoda K, Cleveland DW.

Chromosome Res. 2013 Apr;21(2):101-6. doi: 10.1007/s10577-013-9347-y. Epub 2013 Apr 12.

22.

Ubiquitylation-dependent localization of PLK1 in mitosis.

Beck J, Maerki S, Posch M, Metzger T, Persaud A, Scheel H, Hofmann K, Rotin D, Pedrioli P, Swedlow JR, Peter M, Sumara I.

Nat Cell Biol. 2013 Apr;15(4):430-9. doi: 10.1038/ncb2695. Epub 2013 Mar 3.

PMID:
23455478
23.

Data management challenges in three-dimensional EM.

Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-García E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Kleywegt GJ.

Nat Struct Mol Biol. 2012 Dec;19(12):1203-7. doi: 10.1038/nsmb.2426. No abstract available.

24.

Biological imaging software tools.

Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Erratum in: Nat Methods. 2012 Oct;9(10):1031. Stuurmann, Nico [corrected to Stuurman, Nico].

25.

The adenomatous polyposis coli protein contributes to normal compaction of mitotic chromatin.

Dikovskaya D, Khoudoli G, Newton IP, Chadha GS, Klotz D, Visvanathan A, Lamond A, Swedlow JR, Näthke IS.

PLoS One. 2012;7(6):e38102. doi: 10.1371/journal.pone.0038102. Epub 2012 Jun 13.

26.

High-resolution live imaging of cell behavior in the developing neuroepithelium.

Das RM, Wilcock AC, Swedlow JR, Storey KG.

J Vis Exp. 2012 Apr 12;(62). pii: 3920. doi: 10.3791/3920.

27.

Innovation in biological microscopy: current status and future directions.

Swedlow JR.

Bioessays. 2012 May;34(5):333-40. doi: 10.1002/bies.201100168. Epub 2012 Mar 12. Review.

28.

OMERO: flexible, model-driven data management for experimental biology.

Allan C, Burel JM, Moore J, Blackburn C, Linkert M, Loynton S, Macdonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR.

Nat Methods. 2012 Feb 28;9(3):245-53. doi: 10.1038/nmeth.1896.

29.

Software tools, data structures, and interfaces for microscope imaging.

Stuurman N, Swedlow JR.

Cold Spring Harb Protoc. 2012 Jan 1;2012(1):50-61. doi: 10.1101/pdb.top067504. Review.

PMID:
22194261
30.

A novel reporter of notch signalling indicates regulated and random Notch activation during vertebrate neurogenesis.

Vilas-Boas F, Fior R, Swedlow JR, Storey KG, Henrique D.

BMC Biol. 2011 Aug 31;9:58. doi: 10.1186/1741-7007-9-58.

31.

OMX: a new platform for multimodal, multichannel wide-field imaging.

Dobbie IM, King E, Parton RM, Carlton PM, Sedat JW, Swedlow JR, Davis I.

Cold Spring Harb Protoc. 2011 Aug 1;2011(8):899-909. doi: 10.1101/pdb.top121. No abstract available.

32.

Channeling the data deluge.

Swedlow JR, Zanetti G, Best C.

Nat Methods. 2011 Jun;8(6):463-5. doi: 10.1038/nmeth.1616. No abstract available.

PMID:
21623351
33.

How to be a mitotic chromosome.

Moser SC, Swedlow JR.

Chromosome Res. 2011 Apr;19(3):307-19. doi: 10.1007/s10577-011-9198-3. Review.

34.

Finding an image in a haystack: the case for public image repositories.

Swedlow JR.

Nat Cell Biol. 2011 Mar;13(3):183. doi: 10.1038/ncb0311-183.

PMID:
21364564
35.

Sds22 regulates aurora B activity and microtubule-kinetochore interactions at mitosis.

Posch M, Khoudoli GA, Swift S, King EM, Deluca JG, Swedlow JR.

J Cell Biol. 2010 Oct 4;191(1):61-74. doi: 10.1083/jcb.200912046.

36.

Advanced hardware and software tools for fast multidimensional imaging of living cells.

Swedlow JR.

Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16005-6. doi: 10.1073/pnas.1010043107. Epub 2010 Aug 31. No abstract available.

37.

Metadata matters: access to image data in the real world.

Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR.

J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104.

38.

Cell biology forum: Genome-wide view of mitosis.

Swedlow JR, Cotta-Ramusino C, Elledge SJ.

Nature. 2010 Apr 1;464(7289):684-5. doi: 10.1038/464684a. No abstract available.

PMID:
20360724
39.

Kinetochore alignment within the metaphase plate is regulated by centromere stiffness and microtubule depolymerases.

Jaqaman K, King EM, Amaro AC, Winter JR, Dorn JF, Elliott HL, McHedlishvili N, McClelland SE, Porter IM, Posch M, Toso A, Danuser G, McAinsh AD, Meraldi P, Swedlow JR.

J Cell Biol. 2010 Mar 8;188(5):665-79. doi: 10.1083/jcb.200909005.

40.

In vivo imaging of mammalian cells: image acquisition and analysis.

Swedlow JR, Andrews PD, Platani M.

Cold Spring Harb Protoc. 2009 Sep;2009(9):pdb.ip70. doi: 10.1101/pdb.ip70. No abstract available.

PMID:
20147261
41.

In vivo imaging of mammalian cells: cell engineering and viability.

Swedlow JR, Andrews PD, Platani M.

Cold Spring Harb Protoc. 2009 Sep;2009(9):pdb.ip69. doi: 10.1101/pdb.ip69. No abstract available.

PMID:
20147260
42.

The Nup107-160 nucleoporin complex promotes mitotic events via control of the localization state of the chromosome passenger complex.

Platani M, Santarella-Mellwig R, Posch M, Walczak R, Swedlow JR, Mattaj IW.

Mol Biol Cell. 2009 Dec;20(24):5260-75. doi: 10.1091/mbc.E09-05-0377.

43.

Open source bioimage informatics for cell biology.

Swedlow JR, Eliceiri KW.

Trends Cell Biol. 2009 Nov;19(11):656-60. doi: 10.1016/j.tcb.2009.08.007. Epub 2009 Oct 14.

44.

Building a scientific data grid with DiGS.

Beckett MG, Allton CR, Davies CT, Davis I, Flynn JM, Grant EJ, Hamilton RS, Irving AC, Kenway RD, Ostrowski RH, Perry JT, Swedlow JR, Trew A.

Philos Trans A Math Phys Eng Sci. 2009 Jun 28;367(1897):2471-81. doi: 10.1098/rsta.2009.0050.

45.

Bioimage informatics for experimental biology.

Swedlow JR, Goldberg IG, Eliceiri KW; OME Consortium.

Annu Rev Biophys. 2009;38:327-46. doi: 10.1146/annurev.biophys.050708.133641. Review.

46.

Temporal profiling of the chromatin proteome reveals system-wide responses to replication inhibition.

Khoudoli GA, Gillespie PJ, Stewart G, Andersen JS, Swedlow JR, Blow JJ.

Curr Biol. 2008 Jun 3;18(11):838-43. doi: 10.1016/j.cub.2008.04.075.

47.

Open tools for storage and management of quantitative image data.

Moore J, Allan C, Burel JM, Loranger B, MacDonald D, Monk J, Swedlow JR.

Methods Cell Biol. 2008;85:555-70.

PMID:
18155479
48.

Evaluating performance in three-dimensional fluorescence microscopy.

Murray JM, Appleton PL, Swedlow JR, Waters JC.

J Microsc. 2007 Dec;228(Pt 3):390-405.

49.

Bod1, a novel kinetochore protein required for chromosome biorientation.

Porter IM, McClelland SE, Khoudoli GA, Hunter CJ, Andersen JS, McAinsh AD, Blow JJ, Swedlow JR.

J Cell Biol. 2007 Oct 22;179(2):187-97. Epub 2007 Oct 15.

50.

ELYS/MEL-28 chromatin association coordinates nuclear pore complex assembly and replication licensing.

Gillespie PJ, Khoudoli GA, Stewart G, Swedlow JR, Blow JJ.

Curr Biol. 2007 Oct 9;17(19):1657-62. Epub 2007 Sep 6.

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