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Polycythemia with Renal Cell Carcinoma and Normal Erythropoietin Level.

Kopel J, Sharma P, Warriach I, Swarup S.

Case Rep Urol. 2019 Dec 11;2019:3792514. doi: 10.1155/2019/3792514. eCollection 2019.


A Case of Aortic Dissection Presenting with Atypical Symptoms and Diagnosed with Transthoracic Echocardiography.

Solhjoo M, Swarup S, Makaryus AN.

Case Rep Radiol. 2019 Nov 11;2019:6545472. doi: 10.1155/2019/6545472. eCollection 2019.


Evaluating maize phenotypic variance, heritability, and yield relationships at multiple biological scales across agronomically relevant environments.

Tucker SL, Dohleman FG, Grapov D, Flagel L, Yang S, Wegener KM, Kosola K, Swarup S, Rapp RA, Bedair M, Halls SC, Glenn KC, Hall MA, Allen E, Rice EA.

Plant Cell Environ. 2020 Apr;43(4):880-902. doi: 10.1111/pce.13681. Epub 2020 Feb 5.


Influence of the spatial resolution of the exposure estimate in determining the association between heat waves and adverse health outcomes.

Wu CYH, Zaitchik BF, Swarup S, Gohlke JM.

Ann Am Assoc Geogr. 2019;109(3):875-886. doi: 10.1080/24694452.2018.1511411. Epub 2019 Feb 26.


1H-NMR-based metabolomics to investigate the effects of Phoenix dactylifera seed extracts in LPS-IFN-γ-induced RAW 264.7 cells.

Abdul-Hamid NA, Abas F, Ismail IS, Tham CL, Maulidiani M, Mediani A, Swarup S, Umashankar S.

Food Res Int. 2019 Nov;125:108565. doi: 10.1016/j.foodres.2019.108565. Epub 2019 Jul 16.


Prophylactic retrograde distal common femoral access as a bail-out strategy in patients with increased risk for femoral access complication during transfemoral aortic valve replacement.

Sanghvi K, Swarup S, Burns P, Kovach R, Ross R, Soussa T.

Cardiovasc Revasc Med. 2019 Jul 15. pii: S1553-8389(19)30423-3. doi: 10.1016/j.carrev.2019.07.014. [Epub ahead of print]


Correction for Keogh et al., "Extracellular Electron Transfer Powers Enterococcus faecalis Biofilm Metabolism".

Keogh D, Lam LN, Doyle LE, Matysik A, Pavagadhi S, Umashankar S, Low PM, Dale JL, Song Y, Ng SP, Boothroyd CB, Dunny GM, Swarup S, Williams RBH, Marsili E, Kline KA.

mBio. 2019 Jun 18;10(3). pii: e01080-19. doi: 10.1128/mBio.01080-19. No abstract available.


Bioinspired ZnS:Gd Nanoparticles Synthesized from an Endophytic Fungi Aspergillus flavus for Fluorescence-Based Metal Detection.

Uddandarao P, Balakrishnan RM, Ashok A, Swarup S, Sinha P.

Biomimetics (Basel). 2019 Feb 1;4(1). pii: E11. doi: 10.3390/biomimetics4010011.


Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.

Pinu FR, Beale DJ, Paten AM, Kouremenos K, Swarup S, Schirra HJ, Wishart D.

Metabolites. 2019 Apr 18;9(4). pii: E76. doi: 10.3390/metabo9040076.


NMR metabolomics for evaluating passage number and harvesting effects on mammalian cell metabolome.

Abdul-Hamid NA, Abas F, Maulidiani M, Ismail IS, Tham CL, Swarup S, Umashankar S.

Anal Biochem. 2019 Jul 1;576:20-32. doi: 10.1016/j.ab.2019.04.001. Epub 2019 Apr 7.


Impact of demographic disparities in social distancing and vaccination on influenza epidemics in urban and rural regions of the United States.

Singh M, Sarkhel P, Kang GJ, Marathe A, Boyle K, Murray-Tuite P, Abbas KM, Swarup S.

BMC Infect Dis. 2019 Mar 4;19(1):221. doi: 10.1186/s12879-019-3703-2.


Impacts of peat-forest smoke on urban PM2.5 in the Maritime Continent during 2012-2015: Carbonaceous profiles and indicators.

Tham J, Sarkar S, Jia S, Reid JS, Mishra S, Sudiana IM, Swarup S, Ong CN, Yu LE.

Environ Pollut. 2019 May;248:496-505. doi: 10.1016/j.envpol.2019.02.049. Epub 2019 Feb 20.


RAB7A phosphorylation by TBK1 promotes mitophagy via the PINK-PARKIN pathway.

Heo JM, Ordureau A, Swarup S, Paulo JA, Shen K, Sabatini DM, Harper JW.

Sci Adv. 2018 Nov 21;4(11):eaav0443. doi: 10.1126/sciadv.aav0443. eCollection 2018 Nov.


Characterization of Plant Volatiles Reveals Distinct Metabolic Profiles and Pathways among 12 Brassicaceae Vegetables.

Liu Y, Zhang H, Umashankar S, Liang X, Lee HW, Swarup S, Ong CN.

Metabolites. 2018 Dec 14;8(4). pii: E94. doi: 10.3390/metabo8040094.


EpiViewer: an epidemiological application for exploring time series data.

Thorve S, Wilson ML, Lewis BL, Swarup S, Vullikanti AKS, Marathe MV.

BMC Bioinformatics. 2018 Nov 22;19(1):449. doi: 10.1186/s12859-018-2439-0.


Using meta-omics of contaminated sediments to monitor changes in pathways relevant to climate regulation.

Birrer SC, Dafforn KA, Sun MY, Williams RBH, Potts J, Scanes P, Kelaher BP, Simpson SL, Kjelleberg S, Swarup S, Steinberg P, Johnston EL.

Environ Microbiol. 2019 Jan;21(1):389-401. doi: 10.1111/1462-2920.14470. Epub 2018 Dec 13.


Keystone Species in Pregnancy Gingivitis: A Snapshot of Oral Microbiome During Pregnancy and Postpartum Period.

Balan P, Chong YS, Umashankar S, Swarup S, Loke WM, Lopez V, He HG, Seneviratne CJ.

Front Microbiol. 2018 Oct 9;9:2360. doi: 10.3389/fmicb.2018.02360. eCollection 2018.


Metagenomics Reveals the Influence of Land Use and Rain on the Benthic Microbial Communities in a Tropical Urban Waterway.

Saxena G, Mitra S, Marzinelli EM, Xie C, Wei TJ, Steinberg PD, Williams RBH, Kjelleberg S, Lauro FM, Swarup S.

mSystems. 2018 Jun 5;3(3). pii: e00136-17. doi: 10.1128/mSystems.00136-17. eCollection 2018 May-Jun.


Mutational disruption of the ABCC2 gene in fall armyworm, Spodoptera frugiperda, confers resistance to the Cry1Fa and Cry1A.105 insecticidal proteins.

Flagel L, Lee YW, Wanjugi H, Swarup S, Brown A, Wang J, Kraft E, Greenplate J, Simmons J, Adams N, Wang Y, Martinelli S, Haas JA, Gowda A, Head G.

Sci Rep. 2018 May 8;8(1):7255. doi: 10.1038/s41598-018-25491-9.


Extracellular Electron Transfer Powers Enterococcus faecalis Biofilm Metabolism.

Keogh D, Lam LN, Doyle LE, Matysik A, Pavagadhi S, Umashankar S, Low PM, Dale JL, Song Y, Ng SP, Boothroyd CB, Dunny GM, Swarup S, Williams RBH, Marsili E, Kline KA.

mBio. 2018 Apr 10;9(2). pii: e00626-17. doi: 10.1128/mBio.00626-17. Erratum in: mBio. 2019 Jun 18;10(3):.


Spontaneous rupture of hepatocellular carcinoma with tumor embolism in pulmonary arteries.

Chawla A, Gaikwad V, Swarup S, Kumar T.

Lung India. 2018 Mar-Apr;35(2):178-179. doi: 10.4103/lungindia.lungindia_327_17. No abstract available.


Digital stethoscope: technology update.

Swarup S, Makaryus AN.

Med Devices (Auckl). 2018 Jan 4;11:29-36. doi: 10.2147/MDER.S135882. eCollection 2018. Review.


Disparities in spread and control of influenza in slums of Delhi: findings from an agent-based modelling study.

Adiga A, Chu S, Eubank S, Kuhlman CJ, Lewis B, Marathe A, Marathe M, Nordberg EK, Swarup S, Vullikanti A, Wilson ML.

BMJ Open. 2018 Jan 21;8(1):e017353. doi: 10.1136/bmjopen-2017-017353.


Coronary Artery Vasospasm.

Swarup S, Grossman SA.

StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2020 Jan-.
2019 Dec 11.


Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches.

Brownstein JS, Chu S, Marathe A, Marathe MV, Nguyen AT, Paolotti D, Perra N, Perrotta D, Santillana M, Swarup S, Tizzoni M, Vespignani A, Vullikanti AKS, Wilson ML, Zhang Q.

JMIR Public Health Surveill. 2017 Nov 1;3(4):e83. doi: 10.2196/publichealth.7344.


Metabolic Syndrome.

Swarup S, Zeltser R.

StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2020 Jan-.
2020 Jan 15.


The draft genome of tropical fruit durian (Durio zibethinus).

Teh BT, Lim K, Yong CH, Ng CCY, Rao SR, Rajasegaran V, Lim WK, Ong CK, Chan K, Cheng VKY, Soh PS, Swarup S, Rozen SG, Nagarajan N, Tan P.

Nat Genet. 2017 Nov;49(11):1633-1641. doi: 10.1038/ng.3972. Epub 2017 Oct 9.


Correction to 'Reactive oxygen species drive evolution of pro-biofilm variants in pathogens by modulating cyclic-di-GMP levels'.

Chua SL, Ding Y, Liu Y, Cai Z, Zhou J, Swarup S, Drautz-Moses DI, Schuster SC, Kjelleberg S, Givskov M, Yang L.

Open Biol. 2017 Sep;7(9). pii: 170197. doi: 10.1098/rsob.170197. No abstract available.


Epidemiological and economic impact of pandemic influenza in Chicago: Priorities for vaccine interventions.

Dorratoltaj N, Marathe A, Lewis BL, Swarup S, Eubank SG, Abbas KM.

PLoS Comput Biol. 2017 Jun 1;13(6):e1005521. doi: 10.1371/journal.pcbi.1005521. eCollection 2017 Jun.


Semantic network analysis of vaccine sentiment in online social media.

Kang GJ, Ewing-Nelson SR, Mackey L, Schlitt JT, Marathe A, Abbas KM, Swarup S.

Vaccine. 2017 Jun 22;35(29):3621-3638. doi: 10.1016/j.vaccine.2017.05.052. Epub 2017 May 27.


Architecture of the human interactome defines protein communities and disease networks.

Huttlin EL, Bruckner RJ, Paulo JA, Cannon JR, Ting L, Baltier K, Colby G, Gebreab F, Gygi MP, Parzen H, Szpyt J, Tam S, Zarraga G, Pontano-Vaites L, Swarup S, White AE, Schweppe DK, Rad R, Erickson BK, Obar RA, Guruharsha KG, Li K, Artavanis-Tsakonas S, Gygi SP, Harper JW.

Nature. 2017 May 25;545(7655):505-509. doi: 10.1038/nature22366. Epub 2017 May 17.


Transcriptomics Analysis Reveals Putative Genes Involved in Biofilm Formation and Biofilm-associated Drug Resistance of Enterococcus faecalis.

Seneviratne CJ, Suriyanarayanan T, Swarup S, Chia KHB, Nagarajan N, Zhang C.

J Endod. 2017 Jun;43(6):949-955. doi: 10.1016/j.joen.2017.01.020. Epub 2017 Apr 27.


Going beyond the obvious: Predicting cardiac events in renal disease.

Swarup S, Zeltser R, Druz RS.

J Nucl Cardiol. 2018 Oct;25(5):1674-1676. doi: 10.1007/s12350-017-0829-8. Epub 2017 Mar 16. No abstract available.


Summarizing Simulation Results using Causally-relevant States.

Parikh N, Marathe M, Swarup S.

Multiagent Based Simul. 2016 May;10003:88-103. doi: 10.1007/978-3-319-46840-2_6. Epub 2016 Sep 24.


A comparison of multiple behavior models in a simulation of the aftermath of an improvised nuclear detonation.

Parikh N, Hayatnagarkar HG, Beckman RJ, Marathe MV, Swarup S.

Auton Agent Multi Agent Syst. 2016 Nov;30(6):1148-1174. Epub 2016 Mar 17.


Reactive oxygen species drive evolution of pro-biofilm variants in pathogens by modulating cyclic-di-GMP levels.

Chua SL, Ding Y, Liu Y, Cai Z, Zhou J, Swarup S, Drautz-Moses DI, Schuster SC, Kjelleberg S, Givskov M, Yang L.

Open Biol. 2016 Nov;6(11). pii: 160162. Erratum in: Open Biol. 2017 Sep;7(9):.


Flagellin FliC Phosphorylation Affects Type 2 Protease Secretion and Biofilm Dispersal in Pseudomonas aeruginosa PAO1.

Suriyanarayanan T, Periasamy S, Lin MH, Ishihama Y, Swarup S.

PLoS One. 2016 Oct 4;11(10):e0164155. doi: 10.1371/journal.pone.0164155. eCollection 2016.


Coordinate Regulation of Metabolite Glycosylation and Stress Hormone Biosynthesis by TT8 in Arabidopsis.

Rai A, Umashankar S, Rai M, Kiat LB, Bing JA, Swarup S.

Plant Physiol. 2016 Aug;171(4):2499-515. doi: 10.1104/pp.16.00421. Epub 2016 Jul 18.


Endosome-ER Contacts Control Actin Nucleation and Retromer Function through VAP-Dependent Regulation of PI4P.

Dong R, Saheki Y, Swarup S, Lucast L, Harper JW, De Camilli P.

Cell. 2016 Jul 14;166(2):408-423. doi: 10.1016/j.cell.2016.06.037.


Electrocardiogram: the saviour for this patient.

Chawla A, Swarup S, Gaikwad V.

Neth Heart J. 2016 May;24(5):366-7. doi: 10.1007/s12471-015-0794-2. No abstract available.


Electrocardiogram: the saviour for this patient.

Chawla A, Gaikwad V, Swarup S.

Neth Heart J. 2016 May;24(5):363. doi: 10.1007/s12471-015-0793-3. No abstract available.


RhizoFlowCell system reveals early effects of micropollutants on aquatic plant rhizosphere.

Mynampati KC, Lee YJ, Wijdeveld A, Reuben S, Samavedham L, Kjelleberg S, Swarup S.

Environ Pollut. 2015 Dec;207:205-10. doi: 10.1016/j.envpol.2015.08.047. Epub 2015 Sep 18.


A fungal monooxygenase-derived jasmonate attenuates host innate immunity.

Patkar RN, Benke PI, Qu Z, Chen YY, Yang F, Swarup S, Naqvi NI.

Nat Chem Biol. 2015 Sep;11(9):733-40. doi: 10.1038/nchembio.1885. Epub 2015 Aug 10.


Global Regulator MorA Affects Virulence-Associated Protease Secretion in Pseudomonas aeruginosa PAO1.

Ravichandran A, Ramachandran M, Suriyanarayanan T, Wong CC, Swarup S.

PLoS One. 2015 Apr 20;10(4):e0123805. doi: 10.1371/journal.pone.0123805. eCollection 2015.


Genome-wide identification of phospho-regulators of Wnt signaling in Drosophila.

Swarup S, Pradhan-Sundd T, Verheyen EM.

Development. 2015 Apr 15;142(8):1502-15. doi: 10.1242/dev.116715.


Rehabilitation of post surgical maxillectomy defects using interim obturators-a case series.

Choudhury M, Shanmuganathan N, Padmanabhan TV, Swarup S, Grover M, Arumugam M.

Indian J Surg Oncol. 2014 Dec;5(4):315-20. doi: 10.1007/s13193-014-0361-0. Epub 2014 Dec 17.


Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.

Cirulli ET, Lasseigne BN, Petrovski S, Sapp PC, Dion PA, Leblond CS, Couthouis J, Lu YF, Wang Q, Krueger BJ, Ren Z, Keebler J, Han Y, Levy SE, Boone BE, Wimbish JR, Waite LL, Jones AL, Carulli JP, Day-Williams AG, Staropoli JF, Xin WW, Chesi A, Raphael AR, McKenna-Yasek D, Cady J, Vianney de Jong JM, Kenna KP, Smith BN, Topp S, Miller J, Gkazi A; FALS Sequencing Consortium, Al-Chalabi A, van den Berg LH, Veldink J, Silani V, Ticozzi N, Shaw CE, Baloh RH, Appel S, Simpson E, Lagier-Tourenne C, Pulst SM, Gibson S, Trojanowski JQ, Elman L, McCluskey L, Grossman M, Shneider NA, Chung WK, Ravits JM, Glass JD, Sims KB, Van Deerlin VM, Maniatis T, Hayes SD, Ordureau A, Swarup S, Landers J, Baas F, Allen AS, Bedlack RS, Harper JW, Gitler AD, Rouleau GA, Brown R, Harms MB, Cooper GM, Harris T, Myers RM, Goldstein DB.

Science. 2015 Mar 27;347(6229):1436-41. doi: 10.1126/science.aaa3650. Epub 2015 Feb 19.


Genetic markers for western corn rootworm resistance to Bt toxin.

Flagel LE, Swarup S, Chen M, Bauer C, Wanjugi H, Carroll M, Hill P, Tuscan M, Bansal R, Flannagan R, Clark TL, Michel AP, Head GP, Goldman BS.

G3 (Bethesda). 2015 Jan 7;5(3):399-405. doi: 10.1534/g3.114.016485.


Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity.

Saxena G, Marzinelli EM, Naing NN, He Z, Liang Y, Tom L, Mitra S, Ping H, Joshi UM, Reuben S, Mynampati KC, Mishra S, Umashankar S, Zhou J, Andersen GL, Kjelleberg S, Swarup S.

Environ Sci Technol. 2015 Feb 3;49(3):1462-71. doi: 10.1021/es504531s. Epub 2015 Jan 21.


A mass spectrometry-based unique fragment approach for the identification of microcystins.

Benke PI, Vinay Kumar MC, Pan D, Swarup S.

Analyst. 2015 Feb 21;140(4):1198-206. doi: 10.1039/c4an01702a.


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